Changes in the in-phase relationship between the Indian and subsequent Australian summer monsoons during the past five decades

This study examines the decadal changes in the in-phase relationship between Indian summer monsoon and the subsequent Australian summer monsoon using observational data from 1950–2005. The in-phase relationship is the tendency for a strong Indian summer monsoon to be followed by a strong Australian summer monsoon and vice versa. It is found that the in-phase relationship was weak during the late 1950s and early 1960s, strengthened to a maximum in the early 1970s just before the 1976/77 Pacific climate shift, then declined until the late 1990s. Pacific SST anomalies are noticed to have strong persistence from boreal to austral summer, providing the memory to connect the Indian and subsequent Australian summer monsoon. The simultaneous correlation between the Pacific SST anomalies and the Indian summer monsoon is always strong. It is the weakening and strengthening of the simultaneous correlation between the Australian summer monsoon and the Pacific SST anomalies that contributes to the decadal variations of the in-phase monsoon relation. This study suggests that the interaction between the Australian monsoon and the Pacific Ocean is crucial to tropical climate variability and has experienced significant changes over the past five decades

Advances in the subseasonal prediction of extreme events: relevant case studies across the globe

Extreme weather events have devastating impacts on human health, economic activities, ecosystems, and infrastructure. It is therefore crucial to anticipate extremes and their impacts to allow for preparedness and emergency measures. There is indeed potential for probabilistic subseasonal prediction on time scales of several weeks for many extreme events. Here we provide an overview of subseasonal predictability for case studies of some of the most prominent extreme events across the globe using the ECMWF S2S prediction system: heatwaves, cold spells, heavy precipitation events, and tropical and extratropical cyclones. The considered heatwaves exhibit predictability on time scales of 3–4 weeks, while this time scale is 2–3 weeks for cold spells. Precipitation extremes are the least predictable among the considered case studies. ­Tropical cyclones, on the other hand, can exhibit probabilistic predictability on time scales of up to 3 weeks, which in the presented cases was aided by remote precursors such as the Madden–Julian oscillation. For extratropical cyclones, lead times are found to be shorter. These case studies clearly illustrate the potential for event-dependent advance warnings for a wide range of extreme events. The subseasonal predictability of extreme events demonstrated here allows for an extension of warning horizons, provides advance information to impact modelers, and informs communities and stakeholders affected by the impacts of extreme weather events.Peer Reviewed"Article signat per 40 autors/es: Daniela I. V. Domeisen, Christopher J. White, Hilla Afargan-Gerstman, Ángel G. Muñoz, Matthew A. Janiga, Frédéric Vitart, C. Ole Wulff, Salomé Antoine, Constantin Ardilouze, Lauriane Batté, Hannah C. Bloomfield, David J. Brayshaw, Suzana J. Camargo, Andrew Charlton-Pérez, Dan Collins, Tim Cowan, Maria del Mar Chaves, Laura Ferranti, Rosario Gómez, Paula L. M. González, Carmen González Romero, Johnna M. Infanti, Stelios Karozis, Hera Kim, Erik W. Kolstad, Emerson LaJoie, Llorenç Lledó, Linus Magnusson, Piero Malguzzi, Andrea Manrique-Suñén, Daniele Mastrangelo, Stefano Materia, Hanoi Medina, Lluís Palma, Luis E. Pineda, Athanasios Sfetsos, Seok-Woo Son, Albert Soret, Sarah Strazzo, and Di Tian"Postprint (published version

Evaluation of acidogenesis products’ effect on biogas production performed with metagenomics and isotopic approaches

Background: During the acetogenic step of anaerobic digestion, the products of acidogenesis are oxidized to substrates for methanogenesis: hydrogen, carbon dioxide and acetate. Acetogenesis and methanogenesis are highly interconnected processes due to the syntrophic associations between acetogenic bacteria and hydrogenotrophic methanogens, allowing the whole process to become thermodynamically favorable. The aim of this study is to determine the influence of the dominant acidic products on the metabolic pathways of methane formation and to find a core microbiome and substrate-specific species in a mixed biogas-producing system. Results: Four methane-producing microbial communities were fed with artificial media having one dominant component, respectively, lactate, butyrate, propionate and acetate, for 896 days in 3.5-L Up-flow Anaerobic Sludge Blanket (UASB) bioreactors. All the microbial communities showed moderately different methane production and utilization of the substrates. Analyses of stable carbon isotope composition of the fermentation gas and the substrates showed differences in average values of δ13C(CH4) and δ13C(CO2) revealing that acetate and lactate strongly favored the acetotrophic pathway, while butyrate and propionate favored the hydrogenotrophic pathway of methane formation. Genome-centric metagenomic analysis recovered 234 Metagenome Assembled Genomes (MAGs), including 31 archaeal and 203 bacterial species, mostly unknown and uncultivable. MAGs accounted for 54%–67% of the entire microbial community (depending on the bioreactor) and evidenced that the microbiome is extremely complex in terms of the number of species. The core microbiome was composed of Methanothrix soehngenii (the most abundant), Methanoculleus sp., unknown Bacteroidales and Spirochaetaceae. Relative abundance analysis of all the samples revealed microbes having substrate preferences. Substrate-specific species were mostly unknown and not predominant in the microbial communities. Conclusions: In this experimental system, the dominant fermentation products subjected to methanogenesis moderately modified the final effect of bioreactor performance. At the molecular level, a different contribution of acetotrophic and hydrogenotrophic pathways for methane production, a very high level of new species recovered, and a moderate variability in microbial composition depending on substrate availability were evidenced. Propionate was not a factor ceasing methane production. All these findings are relevant because lactate, acetate, propionate and butyrate are the universal products of acidogenesis, regardless of feedstock

Phenotypic and Genotypic Characterization of Escherichia coli Isolated from Untreated Surface Waters

A common member of the intestinal microbiota in humans and animals is Escherichia coli. Based on the presence of virulence factors, E. coli can be potentially pathogenic. The focus of this study was to isolate E. coli from untreated surface waters (37 sites) in Illinois and Missouri and determine phenotypic and genotypic diversity among isolates. Water samples positive for fecal coliforms based on the Colisure® test were streaked directly onto Eosin Methylene Blue (EMB) agar (37°C) or transferred to EC broth (44.5°C). EC broth cultures producing gas were then streaked onto EMB agar. Forty-five isolates were identified as E. coli using API 20E and Enterotube II identification systems, and some phenotypic variation was observed in metabolism and fermentation. Antibiotic susceptibility of each isolate was also determined using the Kirby-Bauer Method. Differential responses to 10 antimicrobial agents were seen with 7, 16, 2, and 9 of the isolates resistant to ampicillin, cephalothin, tetracycline, and triple sulfonamide, respectively. All of the isolates were susceptible or intermediate to amoxicillin, ciprofloxacin, polymyxin B, gentamicin, imipenem, and nalidixic acid. Genotypic variation was assessed through multiplex Polymerase Chain Reaction for four virulence genes (stx1 and stx2 [shiga toxin], eaeA [intimin]; and hlyA [enterohemolysin]) and one housekeeping gene (uidA [-D-glucuronidase]). Genotypic variation was observed with two of the isolates possessing the virulence gene (eaeA) for intimin. These findings increase our understanding of the diversity of E. coli in the environment which will ultimately help in the assessment of this organism and its role in public health

Association of insularity and body condition to cloacal bacteria prevalence in a small shorebird

Do islands harbour less diverse disease communities than mainland? The island biogeography theory predicts more diverse communities on mainland than on islands due to more niches, more diverse habitats and availability of greater range of hosts. We compared bacteria prevalences ofCampylobacter,ChlamydiaandSalmonellain cloacal samples of a small shorebird, the Kentish plover (Charadrius alexandrinus) between two island populations of Macaronesia and two mainland locations in the Iberian Peninsula. Bacteria were found in all populations but, contrary to the expectations, prevalences did not differ between islands and mainland. Females had higher prevalences than males forSalmonellaand when three bacteria genera were pooled together. Bacteria infection was unrelated to bird's body condition but females from mainland were heavier than males and birds from mainland were heavier than those from islands. Abiotic variables consistent throughout breeding sites, like high salinity that is known to inhibit bacteria growth, could explain the lack of differences in the bacteria prevalence between areas. We argue about the possible drivers and implications of sex differences in bacteria prevalence in Kentish plovers

The Hoopoe's Uropygial Gland Hosts a Bacterial Community Influenced by the Living Conditions of the Bird

Molecular methods have revealed that symbiotic systems involving bacteria are mostly based on whole bacterial communities. Bacterial diversity in hoopoe uropygial gland secretion is known to be mainly composed of certain strains of enterococci, but this conclusion is based solely on culture-dependent techniques. This study, by using culture-independent techniques (based on the 16S rDNA and the ribosomal intergenic spacer region) shows that the bacterial community in the uropygial gland secretion is more complex than previously thought and its composition is affected by the living conditions of the bird. Besides the known enterococci, the uropygial gland hosts other facultative anaerobic species and several obligated anaerobic species (mostly clostridia). The bacterial assemblage of this community was largely invariable among study individuals, although differences were detected between captive and wild female hoopoes, with some strains showing significantly higher prevalence in wild birds. These results alter previous views on the hoopoe-bacteria symbiosis and open a new window to further explore this system, delving into the possible sources of symbiotic bacteria (e.g. nest environments, digestive tract, winter quarters) or the possible functions of different bacterial groups in different contexts of parasitism or predation of their hoopoe host.This work was supported by the Ministerio de Ciencia y Tecnología (projects CGL2005-06975/BOSFEDER; CGL2007-61251/BOSFEDER), the Ministerio de Ciencia e Innovación (projects CGL2009-14006/BOSFEDER; CGL2010-19233-C03-01/BOSFEDER; CGL2010-19233-C03-03/BOSFEDER), the Ministerio de Economía y Competitividad (projects CGL2013-48193-C3-1-P/BOSFEDER; CGL2013-48193-C3-2-P/BOSFEDER), and the Junta de Andalucía (RNM 345, P09-RNM-4557). SMRR received a grant from the Ministerio de Ciencia e Innovación (FPI program, BES-2011-047677)