Analysis of nucleation events in the European boundary layer using the regional aerosol-climate model REMO-HAM with a solar radiation-driven OH-proxy

This work describes improvements in the regional aerosol–climate model REMO-HAM in order to simulate more realistically the process of atmospheric new particle formation (NPF). A new scheme was implemented to simulate OH radical concentrations using a proxy approach based on observations and also accounting for the effects of clouds upon OH concentrations. Second, the nucleation rate calculation was modified to directly simulate the formation rates of 3 nm particles, which removes some unnecessary steps in the formation rate calculations used earlier in the model. Using the updated model version, NPF over Europe was simulated for the periods 2003–2004 and 2008–2009. The statistics of the simulated particle formation events were subsequently compared to observations from 13 ground-based measurement sites. The new model shows improved agreement with the observed NPF rates compared to former versions and can simulate the event statistics realistically for most parts of Europe

Heparan sulfate proteoglycan syndecan-3 is a novel receptor for GDNF, neurturin, and artemin

Syndecan-3 may act alone or as a coreceptor with RET to promote cell spreading, neurite outgrowth, and migration of cortical neurons by GNDF, NRTN, and ARTN

Chicken Pleiotrophin: Regulation of Tissue Specific Expression by Estrogen in the Oviduct and Distinct Expression Pattern in the Ovarian Carcinomas

Pleiotrophin (PTN) is a developmentally-regulated growth factor which is widely distributed in various tissues and also detected in many kinds of carcinomas. However, little is known about the PTN gene in chickens. In the present study, we found chicken PTN to be highly conserved with respect to mammalian PTN genes (91–92.6%) and its mRNA was most abundant in brain, heart and oviduct. This study focused on the PTN gene in the oviduct where it was detected in the glandular (GE) and luminal (LE) epithelial cells. Treatment of young chicks with diethylstilbesterol induced PTN mRNA and protein in GE and LE, but not in other cell types of the oviduct. Further, several microRNAs, specifically miR-499 and miR-1709 were discovered to influence PTN expression via its 3′-UTR which suggests that post-transcriptional regulation influences PTN expression in chickens. We also compared expression patterns and CpG methylation status of the PTN gene in normal and cancerous ovaries from chickens. Our results indicated that PTN is most abundant in the GE of adenocarcinoma of cancerous, but not normal ovaries of hens. Bisulfite sequencing revealed that 30- and 40% of −1311 and −1339 CpG sites are demethylated in ovarian cancer cells, respectively. Collectively, these results indicate that chicken PTN is a novel estrogen-induced gene expressed mainly in the oviductal epithelia implicating PTN regulation of oviduct development and egg formation, and also suggest that PTN is a biomarker for epithelial ovarian carcinoma that could be used for diagnosis and monitoring effects of therapies for the disease

Interstitial cell migration: integrin-dependent and alternative adhesion mechanisms

Adhesion and migration are integrated cell functions that build, maintain and remodel the multicellular organism. In migrating cells, integrins are the main transmembrane receptors that provide dynamic interactions between extracellular ligands and actin cytoskeleton and signalling machineries. In parallel to integrins, other adhesion systems mediate adhesion and cytoskeletal coupling to the extracellular matrix (ECM). These include multifunctional cell surface receptors (syndecans and CD44) and discoidin domain receptors, which together coordinate ligand binding with direct or indirect cytoskeletal coupling and intracellular signalling. We review the way that the different adhesion systems for ECM components impact cell migration in two- and three-dimensional migration models. We further discuss the hierarchy of these concurrent adhesion systems, their specific tasks in cell migration and their contribution to migration in three-dimensional multi-ligand tissue environments

N-syndecan deficiency impairs neural migration in brain

N-syndecan (syndecan-3) is a transmembrane proteoglycan that is abundantly expressed in the major axonal pathways and in the migratory routes of the developing brain. When ligated by heparin-binding (HB) growth-associated molecule (GAM; pleiotrophin), N-syndecan mediates cortactin–Src kinase-dependent neurite outgrowth. However, the functional role of N-syndecan in brain development remains unexplored. In this study, we show that N-syndecan deficiency perturbs the laminar structure of the cerebral cortex as a result of impaired radial migration. In addition, neural migration in the rostral migratory stream is impaired in the N-syndecan–null mice. We suggest that the migration defect depends on impaired HB-GAM–induced Src kinase activation and haptotactic migration. Furthermore, we show that N-syndecan interacts with EGF receptor (EGFR) at the plasma membrane and is required in EGFR-induced neuronal migration

Analysis of nucleation events in the European boundary layer using the regional aerosol–climate model REMO-HAM with a solar radiation-driven OH-proxy

This work describes improvements in the regional aerosol–climate model REMO-HAM in order to simulate more realistically the process of atmospheric new particle formation (NPF). A new scheme was implemented to simulate OH radical concentrations using a proxy approach based on observations and also accounting for the effects of clouds upon OH concentrations. Second, the nucleation rate calculation was modified to directly simulate the formation rates of 3 nm particles, which removes some unnecessary steps in the formation rate calculations used earlier in the model. Using the updated model version, NPF over Europe was simulated for the periods 2003–2004 and 2008–2009. The statistics of the simulated particle formation events were subsequently compared to observations from 13 ground-based measurement sites. The new model shows improved agreement with the observed NPF rates compared to former versions and can simulate the event statistics realistically for most parts of Europe

Summertime Aerosol Radiative Effects and Their Dependence on Temperature over the Southeastern USA

Satellite data suggest that summertime aerosol optical depth (AOD) over the southeastern USA depends on the air/land surface temperature, but the magnitude of the radiative effects caused by this dependence remains unclear. To quantify these radiative effects, we utilized several remote sensing datasets and ECMWF reanalysis data for the years 2005-2011. In addition, the global aerosol-climate model ECHAM-HAMMOZ was used to identify the possible processes affecting aerosol loads and their dependence on temperature over the studied region. The satellite-based observations suggest that changes in the total summertime AOD in the southeastern USA are mainly governed by changes in anthropogenic emissions. In addition, summertime AOD exhibits a dependence on southerly wind speed and land surface temperature (LST). Transport of sea salt and Saharan dust is the likely reason for the wind speed dependence, whereas the temperature-dependent component is linked to temperature-induced changes in the emissions of biogenic volatile organic compounds (BVOCs) over forested regions. The remote sensing datasets indicate that the biogenic contribution increases AOD with increasing temperature by approximately (7 +/- 6) x 10(-3) K-1 over the southeastern USA. In the model simulations, the increase in summertime AOD due to temperature-enhanced BVOC emissions is of a similar magnitude, i.e., (4 +/- 1) x 10(-3) K-1. The largest source of BVOC emissions in this region is broadleaf trees, thus if the observed temperature dependence of AOD is caused by biogenic emissions the dependence should be the largest in the vicinity of forests. Consequently, the analysis of the remote sensing data shows that over mixed forests the biogenic contribution increases AOD by approximately (27 +/- 13) x 10(-3) K-1, which is over four times higher than the value for over the whole domain, while over other land cover types in the study region (woody savannas and cropland/natural mosaic) there is no clear temperature dependence. The corresponding clear-sky direct radiative effect (DRE) of the observation-based biogenic AOD is -0.33 +/- 0.29 W/m(2)/K for the whole domain and -1.3 +/- 0.7 W/m(2)/K over mixed forests only. The model estimate of the regional clear-sky DRE for biogenic aerosols is similar to the observational estimate for the whole domain: -0.29 +/- 0.09 W/m(2)/K. Furthermore, the model simulations showed that biogenic emissions have a significant effective radiative forcing (ERF) in this region: -1.0 +/- 0.5 W/m(2)/K.Peer reviewe

Black carbon concentration and deposition estimations in Finland by the regional aerosol–climate model REMO-HAM

The prediction skill of the regional aerosol–climate model REMO-HAM was assessed against the black carbon (BC) concentration measurements from five locations in Finland, with focus on Hyytiälä station for the year 2005. We examined to what extent the model is able to reproduce the measurements using several statistical tools: median comparison, overlap coefficient (OVL; the common area under two probability distributions curves) and Z score (a measure of standard deviation, shape and spread of the distributions). The results of the statistics showed that the model is biased low. The local and regional emissions of BC have a significant contribution, and the model tendency to flatten the observed BC is most likely dominated by the lack of domestic burning of biofuel in the emission inventories. A further examination of the precipitation data from both measurements and model showed that there is no correlation between REMO's excessive precipitation and BC underestimation. This suggests that the excessive wet removal is not the main cause of the low black carbon concentration output. In addition, a comparison of wind directions in relation with high black carbon concentrations shows that REMO-HAM is able to predict the BC source directions relatively well. Cumulative black carbon deposition fluxes over Finland were estimated, including the deposition on snow

Osteocyte-derived HB-GAM (pleiotrophin) is associated with bone formation and mechanical loading

HB-GAM (also known as pleiotrophin) is a cell matrix-associated protein that is highly expressed in bone. It affects osteoblast function, and might therefore play a role in bone development and remodeling. We aimed to investigate the role of HB-GAM in bone in vivo and in vitro. // The bones of HB-GAM deficient mice with an inbred mouse background were studied by histological, histomorphometrical, radiological, biomechanical and μ-CT analyses and the effect of immobilization was evaluated. HB-GAM localization in vivo was studied. MLO-Y4 osteocytes were subjected to fluid shear stress in vitro, and gene and protein expression were studied by subtractive hybridization, quantitative PCR and Western blot. Human osteoclasts were cultured in the presence of rhHB-GAM and their formation and resorption activities were assayed. // In agreement with previous reports, the skeletal structure of the HB-GAM knockout mice developed normally. However, a growth retardation of the weight-bearing bones was observed by 2 months of age, suggesting a link to physical activity. Adult HB-GAM deficient mice were characterized by low bone formation and osteopenia, as well as resistance to immobilization-dependent bone remodeling. HB-GAM was localized around osteocytes and their processes in vivo and furthermore, osteocytic HB-GAM expression was upregulated by mechanical loading in vitro. HB-GAM did not affect on human osteoclast formation or resorption in vitro. Taken together, our results suggest that HB-GAM is an osteocyte-derived factor that could participate in mediating the osteogenic effects of mechanical loading on bone