Optical pulsations in HZ Herculis. 5. Pulse-resolved spectrophotometry

Digital spectra of HZ Herculis were obtained with 10 A resolution in the 3,600 - 6,000 A region, synchronously dividing the 1.24-s optical pulsation period into eight 155-ms phase bins. The optical pulses are detected in the data, but their fractional amplitude is only 0.08 percent, a factor of 4 less than typically observed. The separate spectra of each one-eighth of the pulse are identical to within the statistics of the observation. If the X-ray to optical pulse reprocessing mechanism concentrates the optical pulsations into discrete spectral line features, data require the pulses to be distributed among more than four such lines

Predicting B Cell Receptor Substitution Profiles Using Public Repertoire Data

B cells develop high affinity receptors during the course of affinity maturation, a cyclic process of mutation and selection. At the end of affinity maturation, a number of cells sharing the same ancestor (i.e. in the same "clonal family") are released from the germinal center, their amino acid frequency profile reflects the allowed and disallowed substitutions at each position. These clonal-family-specific frequency profiles, called "substitution profiles", are useful for studying the course of affinity maturation as well as for antibody engineering purposes. However, most often only a single sequence is recovered from each clonal family in a sequencing experiment, making it impossible to construct a clonal-family-specific substitution profile. Given the public release of many high-quality large B cell receptor datasets, one may ask whether it is possible to use such data in a prediction model for clonal-family-specific substitution profiles. In this paper, we present the method "Substitution Profiles Using Related Families" (SPURF), a penalized tensor regression framework that integrates information from a rich assemblage of datasets to predict the clonal-family-specific substitution profile for any single input sequence. Using this framework, we show that substitution profiles from similar clonal families can be leveraged together with simulated substitution profiles and germline gene sequence information to improve prediction. We fit this model on a large public dataset and validate the robustness of our approach on an external dataset. Furthermore, we provide a command-line tool in an open-source software package (https://github.com/krdav/SPURF) implementing these ideas and providing easy prediction using our pre-fit models.Comment: 23 page

Network of Earthquakes and Recurrences Therein

We quantify the correlation between earthquakes and use the same to distinguish between relevant causally connected earthquakes. Our correlation metric is a variation on the one introduced by Baiesi and Paczuski (2004). A network of earthquakes is constructed, which is time ordered and with links between the more correlated ones. Data pertaining to the California region has been used in the study. Recurrences to earthquakes are identified employing correlation thresholds to demarcate the most meaningful ones in each cluster. The distribution of recurrence lengths and recurrence times are analyzed subsequently to extract information about the complex dynamics. We find that the unimodal feature of recurrence lengths helps to associate typical rupture lengths with different magnitude earthquakes. The out-degree of the network shows a hub structure rooted on the large magnitude earthquakes. In-degree distribution is seen to be dependent on the density of events in the neighborhood. Power laws are also obtained with recurrence time distribution agreeing with the Omori law.Comment: 17 pages, 5 figure

Identification of the X-ray pulsar in Hercules: A new optical pulsar

A series of photographic, photoelectric, and spectroscopic observations beginning June 1, 1972 has led to the optical identification of Her X-1 (2U 1705 + 34), a pulsed X-ray source in an eclipsing binary system, with the thirteenth magnitude blue variable star HZ Herculis. The detection of optical pulses at the frequency of the X-ray pulsar on three nights makes the identification conclusive and establishes HZ Her as the second known optical pulsar. The strength of the optical pulses may be correlated with the orbital phase but is not obviously related to the high or low intensity states of the X-ray source

Far-Ultraviolet Observations of NGC 3516 using the Hopkins Ultraviolet Telescope

We observed the Seyfert 1 galaxy NGC 3516 twice during the flight of Astro-2 using the Hopkins Ultraviolet Telescope in March 1995. Simultaneous X-ray observations were performed with ASCA. Our far-ultraviolet spectra cover the spectral range 820-1840 A with a resolution of 2-4 A. No significant variations were found between the two observations. The total spectrum shows a red continuum, $f_\nu \sim \nu^{-1.89}$, with an observed flux of $\rm 2.2 \times 10^{-14}~erg~cm^{-2}~s^{-1}~\AA^{-1}$ at 1450 A, slightly above the historical mean. Intrinsic absorption in Lyman $\beta$ is visible as well as absorption from O~vi 1032,1038, N~v 1239,1243, Si~iv 1394,1403, and C~iv 1548,1551. The UV absorption lines are far weaker than is usual for NGC~3516, and also lie closer to the emission line redshift rather than showing the blueshift typical of these lines when they are strong. The neutral hydrogen absorption, however, is blueshifted by $400~\rm km~s^{-1}$ relative to the systemic velocity, and it is opaque at the Lyman limit. The sharpness of the cutoff indicates a low effective Doppler parameter, $b < \rm 20~km~s^{-1}$. For $b = \rm 10~km~s^{-1}$ the derived intrinsic column is $\rm 3.5 \times 10^{17}~cm^{-2}$. As in NGC~4151, a single warm absorber cannot produce the strong absorption visible over the wide range of observed ionization states. Matching both the UV and X-ray absorption simultaneously requires absorbers spanning a range of $10^3$ in both ionization parameter and column density.Comment: 18 pages, 4 PostScript figures, uses aaspp4.sty To appear in the August 20, 1996, issue of The Astrophysical Journa

Front explosion in a periodically forced surface reaction

Resonantly forced oscillatory reaction-diffusion systems can exhibit fronts with complicated interfacial structure separating phase-locked homogeneous states. For values of the forcing amplitude below a critical value the front "explodes" and the width of the interfacial zone grows without bound. Such front explosion phenomena are investigated for a realistic model of catalytic CO oxidation on a Pt(110) surface in the 2:1 and 3:1 resonantly forced regimes. In the 2:1 regime, the fronts are stationary and the front explosion leads to a defect-mediated turbulent state. In the 3:1 resonantly forced system, the fronts propagate. The front velocity tends to zero as the front explosion point is reached and the final asymptotic state is a 2:1 resonantly locked labyrinthine pattern. The front dynamics described here should be observable in experiment since the model has been shown to capture essential features of the CO oxidation reaction