Physics of the atmosphere: Response of the water vapor channel of the Meteosat satellite

An accurate model of the atmospheric transmission function is used to obtain the relationship between the cloudless radiances measured by the 6-7 microns Meteosat radiometer (water vapor channel) and the numerical parameters associated to each point of an image. This relationship is compared to the temporary calibration curve published by the European Space Agency

The tropospheric gas composition of Jupiter's north equatorial belt (NH3, PH3, CH3D, GeH4, H2O) and the Jovian D/H isotropic ratio

The gas composition of the troposphere of Jupiter in the clearest regions of the North Equatorial Belt (NEB) was derived from the Voyager 1 IRIS data. The infrared spectrum for this homogeneous cloud free region was modeled to infer altitude profiles for NH3, PH3, GeH4 and H2O. The Profiles for NH3 and PH3 were found to be depleted in the upper troposphere but otherwise in agreement with their solar values at the 1 bar level. The mole fraction for CH3D was determined to be 3.5(+1.0 or -1.3) x 10 to the minus 7th power. The GeH4 mole fraction of 7+ or -2 x 10 to the minus 10th power at the 2 to 3 bar level is a factor of 10 lower than the solar value. The H2O mole fraction is approximately 1 x 0.00001 at the 2.5 bar level and is increasing to approximately 3 x 0.00001 at 4 bars where it is a factor of 30 lower than solar. Using IRIS infrared values for the mole fractions of CH3D and CH4 a value of D/H = 3.6(+1.0 or -1.4)x 0.00001 is derived. Assuming this Jovian D/H ratio is representative of the protosolar nebula, and correcting for chemical galactic evolution, yields a value of 5.5 - 9.0 x 0.00001 for the primordial D/H ratio and an upper limit of 1.8 to 2.4 x 10 to the minus 31st power cu cm for the present day baryon density

Tropospheric methane in the tropics – first year from IASI hyperspectral infrared observations

Simultaneous observations from the Infrared Atmospheric Sounding Interferometer (IASI) and from the Advanced Microwave Sounding Unit (AMSU), launched together onboard the European MetOp platform in October 2006, are used to retrieve a mid-to-upper tropospheric content of methane (CH4) in clear-sky conditions, in the tropics, over sea, for the first 16 months of operation of MetOp (July 2007–October 2008). With its high spectral resolution, IASI provides nine channels in the 7.7 μm band highly sensitive to CH4 with reduced sensitivities to other atmospheric variables. These channels, sensitive to both CH4 and temperature, are used in conjunction with AMSU channels, only sensitive to temperature, to decorrelate both signals through a non-linear inference scheme based on neural networks. A key point of this approach is that no use is made of prior information in terms of methane seasonality, trend, or geographical patterns. The precision of the retrieval is estimated to be about 16 ppbv (~0.9%). Features of the retrieved methane space-time distribution include: (1) a strong seasonal cycle of 30 ppbv in the northern tropics with a maximum in January–March and a minimum in July–September, and a flat seasonal cycle in the southern tropics, in agreement with in-situ measurements; (2) a latitudinal decrease of 30 ppbv from 20° N to 20° S, in boreal spring and summer, lower than what is observed at the surface but in excellent agreement with tropospheric aircraft measurements; (3) geographical patterns in good agreement with simulations from the atmospheric transport and chemistry model MOZART-2, but with a higher variability and a higher concentration in boreal winter; (4) signatures of CH4 emissions transported to the middle troposphere such as a large plume of elevated tropospheric methane south of the Asian continent, which might be due to Asian emissions from rice paddies uplifted by deep convection during the monsoon period and then transported towards Indonesia. In addition to bringing a greatly improved view of methane distribution, these results from IASI should provide a means to observe and understand atmospheric transport pathways of methane from the surface to the upper troposphere

Retrieval of tropospheric CO column from hyperspectral infrared sounders - application to four years of Aqua/AIRS and MetOp-A/IASI

International audienceFour years of tropospheric integrated content of CO were retrieved from infrared hyperspectral observations of AIRS onboard Aqua and IASI onboard MetOp-A, for the period July 2007-June 2011. The retrieval method is based on a double differential approach that relies on the difference between brightness temperatures observed by the sounder and BT simulated by the Automatised Atmospheric Absorption Atlas (4A) radiative transfer model on colocated ECMWF reanalyses, for several couples of channels located in the 4.67 mu m CO band. AIRS and IASI give access to similar integrated contents of CO with a maximum sensitivity near 450 hPa and a half-height width of the weighting function between 200 and 750 hPa depending on the thermal contrast (i.e., the difference between the surface temperature and the temperature of the first pressure level). However, differences in their spectral and radiometric characteristics yield differences in the retrieval characteristics with AIRS selected couples of channels being more sensitive to surface characteristics. Moreover, IASI covers the whole CO absorption band, with a 3 times better spectral resolution, giving access to channels presenting a 3 times higher signal to noise ratio. This results in a better precision and lower standard deviation of the IASI retrievals. Conservatively, comparisons with CARIBIC aircraft measurements yield an averaged relative difference of 3.4% for IASI and 4.9% for AIRS. On average, AIRS and IASI retrievals are in very good agreement, showing the same seasonality, seasonal amplitudes, interannual variability and spatial distribution. The analysis of the monthly evolution of CO particularly highlights the expected strong influence of biomass burning on the evolution of CO in several tropical regions. In particular, a sharp increase in CO in 2010 in the southern tropics, especially over South America and South Africa, is observed, and is shown to be related to El Nino and to the Atlantic Multidecadal Oscillation

Contribution of IASI to the observation of dust aerosol emissions (morning and nighttime) over the Sahara desert

Observing the planet at global scale, twice a day, and measuring the whole infrared atmospheric spectrum (8,461 channels at 0.50 cm−1 resolution), Infrared Atmospheric Sounder Interferometer (IASI)/METOP can concurrently detect clouds, determine the 3‐D atmospheric structure (temperature, water vapor, ozone, etc.), surface properties (emissivity and temperature), as well as dust aerosol AOD and altitude. Observing morning (0930 hr) and nighttime (2130 hr), IASI is in relatively good phase with the most frequent times of occurrence of the main Saharan dust uplift mechanisms reported in the literature. Here we classify IASI dust observations according to both the dust loading (AOD) and the dust layer height, providing a more comprehensive picture of dust characteristics. This classification is analyzed at daily scale and its capability to detect dust uplift events is evaluated through comparisons with results from the particularly well documented June 2011 Fennec campaign. Then, a Dust Emission Index (DEI), specific to IASI, is constructed by selecting AOD‐altitude bins with largest AODs and smallest altitudes likely indicative of freshly emitted dust. Applying this to the 12‐year 2007–2018 period, we determine climatological DEI maps and comparisons are made with other equivalent existing results derived from ground‐based or other satellite observations. Results of these comparisons demonstrate the capability of IASI to document the dust distribution over the whole Earth desert areas over a long period of time. The present approach is also suitable to the processing of the at least hourly observations of the coming Infrared Sounder instrument (IRS), planned on board Meteosat Third Generation (2021)

DNA Topoisomerase I differentially modulates R-loops across the human genome

Background: Co-transcriptional R-loops are abundant non-B DNA structures in mammalian genomes. DNA Topoisomerase I (Top1) is often thought to regulate R-loop formation owing to its ability to resolve both positive and negative supercoils. How Top1 regulates R-loop structures at a global level is unknown. Results: Here, we perform high-resolution strand-specific R-loop mapping in human cells depleted for Top1 and find that Top1 depletion results in both R-loop gains and losses at thousands of transcribed loci, delineating two distinct gene classes. R-loop gains are characteristic for long, highly transcribed, genes located in gene-poor regions anchored to Lamin B1 domains and in proximity to H3K9me3-marked heterochromatic patches. R-loop losses, by contrast, occur in gene-rich regions overlapping H3K27me3-marked active replication initiation regions. Interestingly, Top1 depletion coincides with a block of the cell cycle in G0/G1 phase and a trend towards replication delay. Conclusions: Our findings reveal new properties of Top1 in regulating R-loop homeostasis in a context-dependent manner and suggest a potential role for Top1 in modulating the replication process via R-loop formation

Dimethyl fumarate dosing in humans increases frataxin expression: A potential therapy for Friedreich's Ataxia.

Friedreich’s Ataxia (FA) is an inherited neurodegenerative disorder resulting from decreased expression of the mitochondrial protein frataxin, for which there is no approved therapy. High throughput screening of clinically used drugs identified Dimethyl fumarate (DMF) as protective in FA patient cells. Here we demonstrate that DMF significantly increases frataxin gene (FXN) expression in FA cell model, FA mouse model and in DMF treated humans. DMF also rescues mitochondrial biogenesis deficiency in FA-patient derived cell model. We further examined the mechanism of DMF's frataxin induction in FA patient cells. It has been shown that transcription-inhibitory R-loops form at GAA expansion mutations, thus decreasing FXN expression. In FA patient cells, we demonstrate that DMF significantly increases transcription initiation. As a potential consequence, we observe significant reduction in both R-loop formation and transcriptional pausing thereby significantly increasing FXN expression. Lastly, DMF dosed Multiple Sclerosis (MS) patients showed significant increase in FXN expression by ~85%. Since inherited deficiency in FXN is the primary cause of FA, and DMF is demonstrated to increase FXN expression in humans, DMF could be considered for Friedreich's therapy.Friedreich’s ataxia Research Alliance (FARA

An RNA Polymerase III-Dependent Heterochromatin Barrier at Fission Yeast Centromere 1

Heterochromatin formation involves the nucleation and spreading of structural and epigenetic features along the chromatin fiber. Chromatin barriers and associated proteins counteract the spreading of heterochromatin, thereby restricting it to specific regions of the genome. We have performed gene expression studies and chromatin immunoprecipitation on strains in which native centromere sequences have been mutated to study the mechanism by which a tRNAAlanine gene barrier (cen1 tDNAAla) blocks the spread of pericentromeric heterochromatin at the centromere of chromosome 1 (cen1) in the fission yeast, Schizosaccharomyces pombe. Within the centromere, barrier activity is a general property of tDNAs and, unlike previously characterized barriers, requires the association of both transcription factor IIIC and RNA Polymerase III. Although the cen1 tDNAAla gene is actively transcribed, barrier activity is independent of transcriptional orientation. These findings provide experimental evidence for the involvement of a fully assembled RNA polymerase III transcription complex in defining independent structural and functional domains at a eukaryotic centromere

The 2015 edition of the GEISA spectroscopic database

The GEISA database (Gestion et Etude des Informations Spectroscopiques Atmosphériques: Management and Study of Atmospheric Spectroscopic Information) has been developed and maintained by the ARA/ABC(t) group at LMD since 1974. GEISA is constantly evolving, taking into account the best available spectroscopic data. This paper presents the 2015 release of GEISA (GEISA-2015), which updates the last edition of 2011 and celebrates the 40th anniversary of the database. Significant updates and additions have been implemented in the three following independent databases of GEISA. The “line parameters database” contains 52 molecular species (118 isotopologues) and transitions in the spectral range from 10−6 to 35,877.031 cm−1, representing 5,067,351 entries, against 3,794,297 in GEISA-2011. Among the previously existing molecules, 20 molecular species have been updated. A new molecule (SO3) has been added. HDO, isotopologue of H2O, is now identified as an independent molecular species. Seven new isotopologues have been added to the GEISA-2015 database. The “cross section sub-database” has been enriched by the addition of 43 new molecular species in its infrared part, 4 molecules (ethane, propane, acetone, acetonitrile) are also updated; they represent 3% of the update. A new section is added, in the near-infrared spectral region, involving 7 molecular species: CH3CN, CH3I, CH3O2, H2CO, HO2, HONO, NH3. The “microphysical and optical properties of atmospheric aerosols sub-database” has been updated for the first time since 2003. It contains more than 40 species originating from NCAR and 20 from the ARIA archive of Oxford University. As for the previous versions, this new release of GEISA and associated management software facilities are implemented and freely accessible on the AERIS/ESPRI atmospheric chemistry data center website