Core-shell structures in single flexible-semiflexible block copolymers: Finding the free energy minimum for the folding transition

We investigate the folding transition of a single diblock copolymer consisting of a semiflexible and a flexible block. We obtain a {\it Saturn-shaped} core-shell conformation in the folded state, in which the flexible block forms a core and the semiflexible block wraps around it. We demonstrate two distinctive features of the core-shell structures: (i) The kinetics of the folding transition in the copolymer are significantly more efficient than those of a semiflexible homopolymer. (ii) The core-shell structure does not depend on the transition pathway

Collapse or Swelling Dynamics of Homopolymer Rings: Self-consistent Hartree approach

We investigate by the use of the Martin - Siggia - Rose generating functional technique and the self - consistent Hartree approximation, the dynamics of the ring homopolymer collapse (swelling) following an instantaneous change into a poor (good) solvent conditions.The equation of motion for the time dependent monomer - to - monomer correlation function is systematically derived. It is argued that for describing of the coarse - graining process (which neglects the capillary instability and the coalescence of ``pearls'') the Rouse mode representation is very helpful, so that the resulting equations of motion can be simply solved numerically. In the case of the collapse this solution is analyzed in the framework of the hierarchically crumpled fractal picture, with crumples of successively growing scale along the chain. The presented numerical results are in line with the corresponding simple scaling argumentation which in particular shows that the characteristic collapse time of a segment of length $g$ scales as $t^* \sim \zeta_0 g/\tau$ (where $\zeta_0$ is a bare friction coefficient and $\tau$ is a depth of quench). In contrast to the collapse the globule swelling can be seen (in the case that topological effects are neglected) as a homogeneous expansion of the globule interior. The swelling of each Rouse mode as well as gyration radius $R_g$ is discussed.Comment: 20 pages, 7 figures, submitted to Phys. Rev.

Bouncing or sticky droplets: impalement transitions on superhydrophobic micropatterned surfaces

When a liquid drops impinges a hydrophobic rough surface it can either bounce off the surface (fakir droplets) or be impaled and strongly stuck on it (Wenzel droplets). The analysis of drop impact and quasi static ''loading'' experiments on model microfabricated surfaces allows to clearly identify the forces hindering the impalement transitions. A simple semi-quantitative model is proposed to account for the observed relation between the surface topography and the robustness of fakir non-wetting states. Motivated by potential applications in microfluidics and in the fabrication of self cleaning surfaces, we finally propose some guidelines to design robust superhydrophobic surfaces.Comment: 7 pages, 5 figure

How long does it take to pull an ideal polymer into a small hole?

We present scaling estimates for characteristic times $\tau_{\rm lin}$ and $\tau_{\rm br}$ of pulling ideal linear and randomly branched polymers of $N$ monomers into a small hole by a force $f$. We show that the absorbtion process develops as sequential straightening of folds of the initial polymer configuration. By estimating the typical size of the fold involved into the motion, we arrive at the following predictions: $\tau_{\rm lin}(N) \sim N^{3/2}/f$ and $\tau_{\rm br}(N) \sim N^{5/4}/f$, and we also confirm them by the molecular dynamics experiment.Comment: 4 pages, 3 figure

Collapse Dynamics of a Homopolymer: Theory and Simulation

We present a scaling theory describing the collapse of a homopolymer chain in poor solvent. At time t after the beginning of the collapse, the original Gaussian chain of length N is streamlined to form N/g segments of length R(t), each containing g ~ t monomers. These segments are statistical quantities representing cylinders of length R ~ t^{1/2} and diameter d ~ t^{1/4}, but structured out of stretched arrays of spherical globules. This prescription incorporates the capillary instability. We compare the time-dependent structure factor derived for our theory with that obtained from ultra-large-scale molecular dynamics simulation with explicit solvent. This is the first time such a detailed comparison of theoretical and simulation predictions of collapsing chain structure has been attempted. The favorable agreement between the theoretical and computed structure factors supports the picture of the coarse-graining process during polymer collapse.Comment: 4 pages, 3 figure

Gravitational oscillations of a liquid column

We report gravity oscillations of a liquid column partially immersed in a bath of liquid. We stress in particular some peculiarities of this system, namely (i) the fact that the mass of this oscillator constantly changes with time; (ii) the singular character of the beginning of the rise, for which the mass of the oscillator is zero; (iii) the sources of dissipation in this system, which is found to be dominated at low viscosity by the entrance (or exit) effects, leading to a long-range damping of the oscillations. We conclude with some qualitative description of a second-order phenomenon, namely the eruption of a jet at the beginning of the rise.Comment: 22 pages, pdf. Submitted to Physics of Fluid

Folding and unfolding kinetics of a single semiflexible polymer

We theoretically investigate the kinetics of the folding transition of a single semiflexible polymer. In the folding transition, the growth rate decrease with an increase in the number of monomers in a collapsed domain, suggesting that the main contribution to dissipation is from the motion of the domain. In the unfolding transition, dynamic scaling exponents, 1/8 and 1/4, were determined for disentanglement and relaxation steps, respectively. We performed Langevin dynamics simulations to test our theory. It is found that our theory is in good agreement with simulations. We also propose the kinetics of the transitions in the presence of the hydrodynamic interaction.Comment: 12 pages, 10 figure

Glassy behavior of a homopolymer from molecular dynamics simulations

We study at- and out-of-equilibrium dynamics of a single homopolymer chain at low temperature using molecular dynamics simulations. The main quantities of interest are the average root mean square displacement of the monomers below the theta point, and the structure factor, as a function of time. The observation of these quantities show a close resemblance to those measured in structural glasses and suggest that the polymer chain in its low temperature phase is in a glassy phase, with its dynamics dominated by traps. In equilibrium, at low temperature, we observe the trapping of the monomers and a slowing down of the overall motion of the polymer as well as non-exponential relaxation of the structure factor. In out-of-equilibrium, at low temperatures, we compute the two-time quantities and observe breaking of ergodicity in a range of waiting times, with the onset of aging.Comment: 11 pages, 4 figure

Early Stages of Homopolymer Collapse

Interest in the protein folding problem has motivated a wide range of theoretical and experimental studies of the kinetics of the collapse of flexible homopolymers. In this Paper a phenomenological model is proposed for the kinetics of the early stages of homopolymer collapse following a quench from temperatures above to below the theta temperature. In the first stage, nascent droplets of the dense phase are formed, with little effect on the configurations of the bridges that join them. The droplets then grow by accreting monomers from the bridges, thus causing the bridges to stretch. During these two stages the overall dimensions of the chain decrease only weakly. Further growth of the droplets is accomplished by the shortening of the bridges, which causes the shrinking of the overall dimensions of the chain. The characteristic times of the three stages respectively scale as the zeroth, 1/5 and 6/5 power of the the degree of polymerization of the chain.Comment: 11 pages, 3 figure