Intentionality versus Constructive Empiricism

By focussing on the intentional character of observation in science, we argue that Constructive Empiricism – B.C. van Fraassen’s much debated and explored view of science – is inconsistent. We then argue there are at least two ways out of our Inconsistency Argument, one of which is more easily to square with Constructive Empiricism than the other

Manifestly Supersymmetric RG Flows

Renormalisation group (RG) equations in two-dimensional N=1 supersymmetric field theories with boundary are studied. It is explained how a manifestly N=1 supersymmetric scheme can be chosen, and within this scheme the RG equations are determined to next-to-leading order. We also use these results to revisit the question of how brane obstructions and lines of marginal stability appear from a world-sheet perspective.Comment: 22 pages; references added, minor change

Hepatic resection and transplantation for peripheral cholangiocarcinoma

Background: Recent publications have questioned the role of orthotopic liver transplantation (OLT) in treating advanced or unresectable peripheral cholangiocarcinoma (Ch-Ca). Study Design: We reviewed our experience with Ch- Ca to determine survival rates, recurrence patterns, and risk factors in 54 patients who underwent either hepatic resection or OLT between 1981 and 1994. Liver transplantation was performed in patients with unresectable tumors (n = 12) and in those with advanced cirrhosis (n = 8). There were 33 women (61%) and 21 men (39%), with a mean age of 54.3 years. The median followup period was 6.8 years. Prognostic risk factors were analyzed by univariate and multivariate analyses. Results: Mortality within 30 days was 7.4%. Overall patient and tumor-free survival rates were 64% and 57% at 1 year, 34% and 34% at 3 years, and 26% and 27% at 5 years after operation. Thirty-two patients (59.3%) experienced tumor recurrence. Univariate analysis revealed that multiple tumors, bilobar tumor distribution, regional lymph node involvement, presence of metastasis, positive surgical margins, and advanced pTNM stages were significant negative predictors of both tumor-free and patient survival. Multivariate analysis revealed that positive margins, multiple tumors, and lymph node involvement were independently associated with poor prognosis. When patients with these three negative predictors were excluded, the patient survivals at 1, 3, and 5 years were 74%, 64%, and 62%, respectively. Conclusions: Both hepatic resection and OLT are effective therapies for Ch- Ca when the tumor can be removed with adequate margins, the lesion is singular, and lymph nodes are not involved

The ducky^{2J} Mutation in Cacna2d2 Results in Reduced Spontaneous Purkinje Cell Activity and Altered Gene Expression

The mouse mutant ducky and its allele ducky^{2J} represent a model for absence epilepsy characterized by spike-wave seizures and cerebellar ataxia. These mice have mutations in Cacna2d2, which encodes the α₂δ-2 calcium channel subunit. Of relevance to the ataxic phenotype, α₂δ-2 mRNA is strongly expressed in cerebellar Purkinje cells (PCs). The Cacna2d2du2J mutation results in a 2 bp deletion in the coding region and a complete loss of α₂δ-2 protein. Here we show that du^{2J}/du^{2J} mice have a 30% reduction in somatic calcium current and a marked fall in the spontaneous PC firing rate at 22°C, accompanied by a decrease in firing regularity, which is not affected by blocking synaptic input to PCs. At 34°C, du^{2J}/du^{2J} PCs show no spontaneous intrinsic activity. DU^{2J}/du^{2J} mice also have alterations in the cerebellar expression of several genes related to PC function. At postnatal day 21, there is an elevation of tyrosine hydroxylase mRNA and a reduction in tenascin-C gene expression. Although du^{2J}/+ mice have a marked reduction in α₂δ-2 protein, they show no fall in PC somatic calcium currents or increase in cerebellar tryrosine hydroxylase gene expression. However, du^{2J}/+ PCs do exhibit a significant reduction in firing rate, correlating with the reduction in α₂δ-2. A hypothesis for future study is that effects on gene expression occur as a result of a reduction in somatic calcium currents, whereas effects on PC firing occur as a long-term result of loss of α₂δ-2 and/or a reduction in calcium currents and calcium-dependent processes in regions other than the soma

The abundances and distributions of molluscs in the southern Iberian Peninsula: A comparison of marine and terrestrial systems

Molluscs are the second most diverse of all animal phyla, and occur in many habitat types. They are, therefore, a particularly good phylum with which to compare and contrast differences between ecosystems. Mollusc data from a number of sites along the southern coast of the Iberian Peninsula are analysed to study patterns of diversity and distribution using a range of multivariate techniques. Within each site, data are presented from three locations -fully terrestrial, rocky intertidal and soft bottom benthic (10 m and 20 m depths)- all in close proximity. The species are then classified in relation to morphology and size, and analysed at supraspecific levels to elucidate underlying patterns. The observed patterns are briefly discussed, with particular reference to the differential scope and importance of controlling factors in each ecosystem, such as dispersal processes. The results from the systems are compared and discussed in the context of ecological and evolutionary constraints in Mollusca.Los moluscos constituyen el segundo filo animal más diverso y se encuentran en muchos tipos de hábitat, por lo que son idóneos para establecer comparaciones entre distintos ecosistemas. Se han analizado los datos de los moluscos obtenidos en una serie de emplazamientos que cubrían el sur de la península Ibérica para determinar, empleando distintas técnicas multivariantes, los patrones de diversidad y distribución de estos organismos. Los datos se tomaron de ejemplares capturados en lugares del medio terrestre próximos a la línea de costa, de la franja intermareal rocosa y de sedimentos de fondos marinos situados a 10 y 20 m de profundidad. Las especies fueron clasificadas atendiendo a la morfología y el tamaño, y se analizaron a nivel supraespecífico para elucidar los patrones generales, que se discuten aquí, brevemente, con especial énfasis en las diferencias según la importancia de los factores que controlan cada ecosistema, como, por ejemplo, los procesos de dispersión. Los resultados de los distintos sistemas se comparan y discuten en el contexto de las tendencias ecológicas y evolutivas de los moluscos.Instituto Español de Oceanografí

An experimental approach to optimising refraction sensitivity for lab-based edge illumination phase contrast set-ups

Refraction sensitivity can be optimised for differential x-ray phase contrast (XPC) imaging methods by modifying the set-up. Often, modifications involve changing source/detector parameters, propagation distances, or the design of optical components, i.e. parameters that are not readily changed without non-trivial time investment, replacing components, or performing high-precision recalibrations. The edge illumination (EI) XPC method provides a method of optimising the refraction sensitivity, by exploiting micrometric translations of its periodic masks, that bypasses the constraints listed above. These translations can be performed on-the-fly and allow optimising the refraction signal for specific applications without making significant changes to the set-up. The method can prove advantageous for lab-based systems that make use of larger sources but with limited available set-up space. In this paper, we study how refraction sensitivity varies as a function of illuminated pixel fraction (IPF) under two commonly encountered experimental conditions: (1) at approximately constant detected counts, and (2) at equal exposure time. We compare the standard deviation in the background of reconstructed refraction images at different IPFs and find that refraction sensitivity is optimal at 25% IPF under both conditions. Finally, we demonstrate that refraction sensitivity affects the visibility of weakly refracting features on an insect leg. The results suggest that IPFs lower than 50% can actually be preferable, especially in the case where the statistics is kept constant, and provide experimental validation that phase sensitivity in EI is not fixed once the system parameters are defined

The effect of the Syrian crisis on electricity supply and the household life in North-West Syria: a university-based study

This study analysed the current situation of access to electricity in Northwestern Syria. Using a household survey [N=136], a questionnaire with generator owners [N=8] and interviews with academics [N=2] in Idlib and Azaz regions of Syria, the research revealed that electricity generation has become nearly entirely dependent on the private sector and the expenditure on electricity increased by 82 percent, limiting the availability of electricity mostly between 2 and 10 hours per day

Genetic mapping of novel modifiers for ApcMin induced intestinal polyps’ development using the genetic architecture power of the collaborative cross mice

Background: Familial adenomatous polyposis is an inherited genetic disease, characterized by colorectal polyps. It is caused by inactivating mutations in the Adenomatous polyposis coli (Apc) gene. Mice carrying a nonsense mutation in the Apc gene at R850, which is designated ApcMin/+ (Multiple intestinal neoplasia), develop intestinal adenomas. Several genetic modifier loci of Min (Mom) were previously mapped, but so far, most of the underlying genes have not been identified. To identify novel modifier loci associated with ApcMin/+, we performed quantitative trait loci (QTL) analysis for polyp development using 49 F1 crosses between different Collaborative Cross (CC) lines and C57BL/6 J-ApcMin/+mice. The CC population is a genetic reference panel of recombinant inbred lines, each line independently descended from eight genetically diverse founder strains. C57BL/6 J-ApcMin/+ males were mated with females from 49 CC lines. F1 offspring were terminated at 23 weeks and polyp counts from three sub-regions (SB1–3) of small intestinal and colon were recorded. Results: The number of polyps in all these sub-regions and colon varied significantly between the different CC lines. At 95% genome-wide significance, we mapped nine novel QTL for variation in polyp number, with distinct QTL associated with each intestinal sub-region. QTL confidence intervals varied in width between 2.63–17.79 Mb. We extracted all genes in the mapped QTL at 90 and 95% CI levels using the BioInfoMiner online platform to extract, significantly enriched pathways and key linker genes, that act as regulatory and orchestrators of the phenotypic landscape associated with the ApcMin/+ mutation. Conclusions: Genomic structure of the CC lines has allowed us to identify novel modifiers and confirmed some of the previously mapped modifiers. Key genes involved mainly in metabolic and immunological processes were identified. Future steps in this analysis will be to identify regulatory elements – and possible epistatic effects – located in the mapped QTL

Large field of view, fast and low dose multimodal phase-contrast imaging at high x-ray energy

X-ray phase contrast imaging (XPCI) is an innovative imaging technique which extends the contrast capabilities of ‘conventional’ absorption based x-ray systems. However, so far all XPCI implementations have suffered from one or more of the following limitations: low x-ray energies, small field of view (FOV) and long acquisition times. Those limitations relegated XPCI to a ‘research-only’ technique with an uncertain future in terms of large scale, high impact applications. We recently succeeded in designing, realizing and testing an XPCI system, which achieves significant steps toward simultaneously overcoming these limitations. Our system combines, for the first time, large FOV, high energy and fast scanning. Importantly, it is capable of providing high image quality at low x-ray doses, compatible with or even below those currently used in medical imaging. This extends the use of XPCI to areas which were unpractical or even inaccessible to previous XPCI solutions. We expect this will enable a long overdue translation into application fields such as security screening, industrial inspections and large FOV medical radiography – all with the inherent advantages of the XPCI multimodality

Effectiveness of social egg freezing: Protocol for systematic review and meta-analyses

© 2019 Author(s). Introduction Social egg freezing is storing egg for the purpose of preserving fertility and delayed childbearing. Currently, little is known about the utilisation and effectiveness of this approach. This review aims to determine (1) the proportion of women who used their stored eggs, and (2) the egg survival rate through vitrification, and the clinical pregnancy rate and live birth rate per 100 women partaking in the procedure, and among women who stored their eggs for medical reasons. Methods and analyses This systematic review will be done according to the items listed in the Preferred Reporting Items for Systematic Reviews and Meta-Analyses statement. PubMed, Embase, Scopus, The Cumulative Index to Nursing and Allied Health Literature (CINAHL) and the Cochrane Library and Health Technology Assessment databases will be searched to identify eligible studies published since 2012. Two reviewers will independently appraise the eligibility and quality of the studies based on preset checklists and extract the data using a data extraction template. Outcomes of interest are proportion of women who used their stored eggs, egg survival rate, pregnancy rate and live birth rates. We will determine the presence heterogeneity among studies using the Cochrane's Q test. The percentage of total variation across studies, which is due to statistical heterogeneity, will be calculated using the I 2 statistics. Outcomes of interest will be pooled together using metaprop programme STATA V.14. Ethics and dissemination For this review, ethical committee approval is not required. We will use publically available data from previously published studies. The final report of the review will be disseminated through publication on national or international journal, and it will be presented on different scientific conferences