Ontology-Based Interactive Information Extraction From Scientific Abstracts

Over recent years, there has been a growing interest in extracting information automatically or semi-automatically from the scientific literature. This paper describes a novel ontology-based interactive information extraction (OBIIE) framework and a specific OBIIE system. We describe how this system enables life scientists to make ad hoc queries similar to using a standard search engine, but where the results are obtained in a database format similar to a pre-programmed information extraction engine. We present a case study in which the system was evaluated for extracting co-factors from EMBASE and MEDLINE

Contributions of Semantic Web Tools to Relational Models

5International audienceIn the quest for models that could help to manage the data, relational model has been the most efficient data management solution and the data management bedrock of business information processing. Approaches have resorted to the integration of data analysis improvement knowledge and data interpretation using relational models. The availability of multiple heterogeneous, autonomous, distributed data sources containing related information has created a need for integrated access to these information systems. Although the relational models are recommended through their advantages, they have also some limits such as the data structure and relation and also the interoperability between databases. This paper studies the contributions of answering limits through relational model through the efforts of the Semantic Web Community (W3C)

Design and evaluation of an ontology based information extraction system for radiological reports

Cataloged from PDF version of article.This paper describes an information extraction system that extracts and converts the available information in free text Turkish radiology reports into a structured information model using manually created extraction rules and domain ontology. The ontology provides flexibility in the design of extraction rules, and determines the information model for the extracted semantic information. Although our information extraction system mainly concentrates on abdominal radiology reports, the system can be used in another field of medicine by adapting its ontology and extraction rule set. We achieved very high precision and recall results during the evaluation of the developed system with unseen radiology reports. (C) 2010 Elsevier Ltd. All rights reserved

Towards a Semantic Calibration of Lexical Word via EEG

Abstract. The calibration method used in this study allows for the examination of distributed, but potentially subtle, representations of semantic information between mechanistic encoding of the language and the EEG. In particular, a horizontal connection between two basic Fundamental Operations (Semantic Composition and Synchronization) is attempted. The experimental results gave significant differences, which can be considered reliable and promising for further investigation. The experiments gave helpful results. Consequently, this method will be tested along with the classification step by appropriate neural network classifiers

Design and evaluation of an ontology based information extraction system for radiological reports

This paper describes an information extraction system that extracts and converts the available information in free text Turkish radiology reports into a structured information model using manually created extraction rules and domain ontology. The ontology provides flexibility in the design of extraction rules, and determines the information model for the extracted semantic information. Although our information extraction system mainly concentrates on abdominal radiology reports, the system can be used in another field of medicine by adapting its ontology and extraction rule set. We achieved very high precision and recall results during the evaluation of the developed system with unseen radiology reports. © 2010 Elsevier Ltd

Modelo de acesso a fontes em linguagem natural no governo electrónico

Doutoramento em Engenharia InformáticaFor the actual existence of e-government it is necessary and crucial to provide public information and documentation, making its access simple to citizens. A portion, not necessarily small, of these documents is in an unstructured form and in natural language, and consequently outside of which the current search systems are generally able to cope and effectively handle. Thus, in thesis, it is possible to improve access to these contents using systems that process natural language and create structured information, particularly if supported in semantics. In order to put this thesis to test, this work was developed in three major phases: (1) design of a conceptual model integrating the creation of structured information and making it available to various actors, in line with the vision of e-government 2.0; (2) definition and development of a prototype instantiating the key modules of this conceptual model, including ontology based information extraction supported by examples of relevant information, knowledge management and access based on natural language; (3) assessment of the usability and acceptability of querying information as made possible by the prototype - and in consequence of the conceptual model - by users in a realistic scenario, that included comparison with existing forms of access. In addition to this evaluation, at another level more related to technology assessment and not to the model, evaluations were made on the performance of the subsystem responsible for information extraction. The evaluation results show that the proposed model was perceived as more effective and useful than the alternatives. Associated with the performance of the prototype to extract information from documents, comparable to the state of the art, results demonstrate the feasibility and advantages, with current technology, of using natural language processing and integration of semantic information to improve access to unstructured contents in natural language. The conceptual model and the prototype demonstrator intend to contribute to the future existence of more sophisticated search systems that are also more suitable for e-government. To have transparency in governance, active citizenship, greater agility in the interaction with the public administration, among others, it is necessary that citizens and businesses have quick and easy access to official information, even if it was originally created in natural language.Para a efectiva existência de governo electrónico é necessário e crucial a disponibilização de informação e documentação pública e tornar simples o acesso a esta pelos cidadãos. Uma parte, não necessariamente pequena, destes documentos encontra-se sob uma forma não estruturada e em linguagem natural e, consequentemente, fora do que os sistemas de pesquisa actuais conseguem em geral suportar e disponibilizar eficazmente. Assim, em tese, é possível melhorar o acesso a estes conteúdos com recurso a sistemas que processem linguagem natural e que sejam capazes de criar informação estruturada, em especial se suportados numa semântica. Com o objectivo de colocar esta tese à prova, o desenvolvimento deste trabalho integrou três grandes fases ou vertentes: (1) Criação de um modelo conceptual integrando a criação de informação estruturada e a sua disponibilização para vários actores, alinhado com a visão do governo electrónico 2.0; (2) Definição e desenvolvimento de um protótipo instanciando os módulos essenciais deste modelo conceptual, nomeadamente a extracção de informação suportada em ontologias e exemplos de informação relevante, gestão de conhecimento e acesso baseado em linguagem natural; (3) Uma avaliação de usabilidade e aceitabilidade da consulta à informação tornada possível pelo protótipo – e em consequência do modelo conceptual - por utilizadores num cenário realista e que incluiu comparação com formas de acesso existentes. Além desta avaliação, a outro nível, mais relacionado com avaliação de tecnologias e não do modelo, foram efectuadas avaliações do desempenho do subsistema responsável pela extracção de informação. Os resultados da avaliação mostram que o modelo proposto foi percepcionado como mais eficaz e mais útil que as alternativas. Associado ao desempenho do protótipo a extrair informação dos documentos, comparável com o estado da arte, os resultados obtidos mostram a viabilidade e as vantagens, com a tecnologia actual, de utilizar processamento de linguagem natural e integração de informação semântica para melhorar acesso a conteúdos em linguagem natural e não estruturados. O modelo conceptual e o protótipo demonstrador pretendem contribuir para a existência futura de sistemas de pesquisa mais sofisticados e adequados ao governo electrónico. Para existir transparência na governação, cidadania activa, maior agilidade na interacção com a administração pública, entre outros, é necessário que cidadãos e empresas tenham acesso rápido e fácil a informação oficial, mesmo que ela tenha sido originalmente criada em linguagem natural

Exploring Written Artefacts

This collection, presented to Michael Friedrich in honour of his academic career at of the Centre for the Study of Manuscript Cultures, traces key concepts that scholars associated with the Centre have developed and refined for the systematic study of manuscript cultures. At the same time, the contributions showcase the possibilities of expanding the traditional subject of ‘manuscripts’ to the larger perspective of ‘written artefacts’

Exploring Written Artefacts

This collection, presented to Michael Friedrich in honour of his academic career at of the Centre for the Study of Manuscript Cultures, traces key concepts that scholars associated with the Centre have developed and refined for the systematic study of manuscript cultures. At the same time, the contributions showcase the possibilities of expanding the traditional subject of ‘manuscripts’ to the larger perspective of ‘written artefacts’