AER Spiking Neuron Computation on GPUs: The Frame-to-AER Generation

Neuro-inspired processing tries to imitate the nervous system and may resolve complex problems, such as visual recognition. The spike-based philosophy based on the Address-Event-Representation (AER) is a neuromorphic interchip communication protocol that allows for massive connectivity between neurons. Some of the AER-based systems can achieve very high performances in real-time applications. This philosophy is very different from standard image processing, which considers the visual information as a succession of frames. These frames need to be processed in order to extract a result. This usually requires very expensive operations and high computing resource consumption. Due to its relative youth, nowadays AER systems are short of cost-effective tools like emulators, simulators, testers, debuggers, etc. In this paper the first results of a CUDA-based tool focused on the functional processing of AER spikes is presented, with the aim of helping in the design and testing of filters and buses management of these systems.Ministerio de Educación y Ciencia TEC2009-10639-C04-0

Parallel computing for brain simulation

[Abstract] Background: The human brain is the most complex system in the known universe, it is therefore one of the greatest mysteries. It provides human beings with extraordinary abilities. However, until now it has not been understood yet how and why most of these abilities are produced. Aims: For decades, researchers have been trying to make computers reproduce these abilities, focusing on both understanding the nervous system and, on processing data in a more efficient way than before. Their aim is to make computers process information similarly to the brain. Important technological developments and vast multidisciplinary projects have allowed creating the first simulation with a number of neurons similar to that of a human brain. Conclusion: This paper presents an up-to-date review about the main research projects that are trying to simulate and/or emulate the human brain. They employ different types of computational models using parallel computing: digital models, analog models and hybrid models. This review includes the current applications of these works, as well as future trends. It is focused on various works that look for advanced progress in Neuroscience and still others which seek new discoveries in Computer Science (neuromorphic hardware, machine learning techniques). Their most outstanding characteristics are summarized and the latest advances and future plans are presented. In addition, this review points out the importance of considering not only neurons: Computational models of the brain should also include glial cells, given the proven importance of astrocytes in information processing.Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; GRC2014/049Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; R2014/039Instituto de Salud Carlos III; PI13/0028

Deep Artificial Neural Networks and Neuromorphic Chips for Big Data Analysis: Pharmaceutical and Bioinformatics Applications

[Abstract] Over the past decade, Deep Artificial Neural Networks (DNNs) have become the state-of-the-art algorithms in Machine Learning (ML), speech recognition, computer vision, natural language processing and many other tasks. This was made possible by the advancement in Big Data, Deep Learning (DL) and drastically increased chip processing abilities, especially general-purpose graphical processing units (GPGPUs). All this has created a growing interest in making the most of the potential offered by DNNs in almost every field. An overview of the main architectures of DNNs, and their usefulness in Pharmacology and Bioinformatics are presented in this work. The featured applications are: drug design, virtual screening (VS), Quantitative Structure–Activity Relationship (QSAR) research, protein structure prediction and genomics (and other omics) data mining. The future need of neuromorphic hardware for DNNs is also discussed, and the two most advanced chips are reviewed: IBM TrueNorth and SpiNNaker. In addition, this review points out the importance of considering not only neurons, as DNNs and neuromorphic chips should also include glial cells, given the proven importance of astrocytes, a type of glial cell which contributes to information processing in the brain. The Deep Artificial Neuron–Astrocyte Networks (DANAN) could overcome the difficulties in architecture design, learning process and scalability of the current ML methods.Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; GRC2014/049Galicia. Consellería de Cultura, Educación e Ordenación Universitaria; R2014/039Instituto de Salud Carlos III; PI13/0028

Efficient spiking neural network model of pattern motion selectivity in visual cortex

Simulating large-scale models of biological motion perception is challenging, due to the required memory to store the network structure and the computational power needed to quickly solve the neuronal dynamics. A low-cost yet high-performance approach to simulating large-scale neural network models in real-time is to leverage the parallel processing capability of graphics processing units (GPUs). Based on this approach, we present a two-stage model of visual area MT that we believe to be the first large-scale spiking network to demonstrate pattern direction selectivity. In this model, component-direction- selective (CDS) cells in MT linearly combine inputs from V1 cells that have spatiotemporal receptive fields according to the motion energy model of Simoncelli and Heeger. Pattern-direction-selective (PDS) cells in MT are constructed by pooling over MT CDS cells with a wide range of preferred directions. Responses of our model neurons are comparable to electrophysiological results for grating and plaid stimuli as well as speed tuning. The behavioral response of the network in a motion discrimination task is in agreement with psychophysical data. Moreover, our implementation outperforms a previous implementation of the motion energy model by orders of magnitude in terms of computational speed and memory usage. The full network, which comprises 153,216 neurons and approximately 40 million synapses, processes 20 frames per second of a 40∈×∈40 input video in real-time using a single off-the-shelf GPU. To promote the use of this algorithm among neuroscientists and computer vision researchers, the source code for the simulator, the network, and analysis scripts are publicly available. © 2014 Springer Science+Business Media New York

Simulation of networks of spiking neurons: A review of tools and strategies

We review different aspects of the simulation of spiking neural networks. We start by reviewing the different types of simulation strategies and algorithms that are currently implemented. We next review the precision of those simulation strategies, in particular in cases where plasticity depends on the exact timing of the spikes. We overview different simulators and simulation environments presently available (restricted to those freely available, open source and documented). For each simulation tool, its advantages and pitfalls are reviewed, with an aim to allow the reader to identify which simulator is appropriate for a given task. Finally, we provide a series of benchmark simulations of different types of networks of spiking neurons, including Hodgkin-Huxley type, integrate-and-fire models, interacting with current-based or conductance-based synapses, using clock-driven or event-driven integration strategies. The same set of models are implemented on the different simulators, and the codes are made available. The ultimate goal of this review is to provide a resource to facilitate identifying the appropriate integration strategy and simulation tool to use for a given modeling problem related to spiking neural networks.Comment: 49 pages, 24 figures, 1 table; review article, Journal of Computational Neuroscience, in press (2007

Object detection and recognition with event driven cameras

This thesis presents study, analysis and implementation of algorithms to perform object detection and recognition using an event-based cam era. This sensor represents a novel paradigm which opens a wide range of possibilities for future developments of computer vision. In partic ular it allows to produce a fast, compressed, illumination invariant output, which can be exploited for robotic tasks, where fast dynamics and signi\ufb01cant illumination changes are frequent. The experiments are carried out on the neuromorphic version of the iCub humanoid platform. The robot is equipped with a novel dual camera setup mounted directly in the robot\u2019s eyes, used to generate data with a moving camera. The motion causes the presence of background clut ter in the event stream. In such scenario the detection problem has been addressed with an at tention mechanism, speci\ufb01cally designed to respond to the presence of objects, while discarding clutter. The proposed implementation takes advantage of the nature of the data to simplify the original proto object saliency model which inspired this work. Successively, the recognition task was \ufb01rst tackled with a feasibility study to demonstrate that the event stream carries su\ufb03cient informa tion to classify objects and then with the implementation of a spiking neural network. The feasibility study provides the proof-of-concept that events are informative enough in the context of object classi\ufb01 cation, whereas the spiking implementation improves the results by employing an architecture speci\ufb01cally designed to process event data. The spiking network was trained with a three-factor local learning rule which overcomes weight transport, update locking and non-locality problem. The presented results prove that both detection and classi\ufb01cation can be carried-out in the target application using the event data

ANALOG SIGNAL PROCESSING SOLUTIONS AND DESIGN OF MEMRISTOR-CMOS ANALOG CO-PROCESSOR FOR ACCELERATION OF HIGH-PERFORMANCE COMPUTING APPLICATIONS

Emerging applications in the field of machine vision, deep learning and scientific simulation require high computational speed and are run on platforms that are size, weight and power constrained. With the transistor scaling coming to an end, existing digital hardware architectures will not be able to meet these ever-increasing demands. Analog computation with its rich set of primitives and inherent parallel architecture can be faster, more efficient and compact for some of these applications. The major contribution of this work is to show that analog processing can be a viable solution to this problem. This is demonstrated in the three parts of the dissertation. In the first part of the dissertation, we demonstrate that analog processing can be used to solve the problem of stereo correspondence. Novel modifications to the algorithms are proposed which improves the computational speed and makes them efficiently implementable in analog hardware. The analog domain implementation provides further speedup in computation and has lower power consumption than a digital implementation. In the second part of the dissertation, a prototype of an analog processor was developed using commercially available off-the-shelf components. The focus was on providing experimental results that demonstrate functionality and to show that the performance of the prototype for low-level and mid-level image processing tasks is equivalent to a digital implementation. To demonstrate improvement in speed and power consumption, an integrated circuit design of the analog processor was proposed, and it was shown that such an analog processor would be faster than state-of-the-art digital and other analog processors. In the third part of the dissertation, a memristor-CMOS analog co-processor that can perform floating point vector matrix multiplication (VMM) is proposed. VMM computation underlies some of the major applications. To demonstrate the working of the analog co-processor at a system level, a new tool called PSpice Systems Option is used. It is shown that the analog co-processor has a superior performance when compared to the projected performances of digital and analog processors. Using the new tool, various application simulations for image processing and solution to partial differential equations are performed on the co-processor model

Efficient multiprocessing architectures for spiking neural network emulation based on configurable devices

The exploration of the dynamics of bioinspired neural networks has allowed neuroscientists to understand some clues and structures of the brain. Electronic neural network implementations are useful tools for this exploration. However, appropriate architectures are necessary due to the extremely high complexity of those networks. There has been an extraordinary development in reconfigurable computing devices within a short period of time especially in their resource availability, speed, and reconfigurability (FPGAs), which makes these devices suitable to emulate those networks. Reconfigurable parallel hardware architecture is proposed in this thesis in order to emulate in real time complex and biologically realistic spiking neural networks (SNNs). Some relevant SNN models and their hardware approaches have been studied, and analyzed in order to create an architecture that supports the implementation of these SNN models efficiently. The key factors, which involve flexibility in algorithm programmability, high performance processing, low area and power consumption, have been taken into account. In order to boost the performance of the proposed architecture, several techniques have been developed: time to space mapping, neural virtualization, flexible synapse-neuron mapping, specific learning and execution modes, among others. Besides this, an interface unit has been developed in order to build a bio-inspired system, which can process sensory information from the environment. The spiking-neuron-based system combines analog and digital multi-processor implementations. Several applications have been developed as a proof-of-concept in order to show the capabilities of the proposed architecture for processing this type of information.L'estudi de la dinàmica de les xarxes neuronals bio-inspirades ha permès als neurocientífics entendre alguns processos i estructures del cervell. Les implementacions electròniques d'aquestes xarxes neuronals són eines útils per dur a terme aquest tipus d'estudi. No obstant això, l'alta complexitat de les xarxes neuronals requereix d'una arquitectura apropiada que pugui simular aquest tipus de xarxes. Emular aquest tipus de xarxes en dispositius configurables és possible a causa del seu extraordinari desenvolupament respecte a la seva disponibilitat de recursos, velocitat i capacitat de reconfiguració (FPGAs ). En aquesta tesi es proposa una arquitectura maquinari paral·lela i configurable per emular les complexes i realistes xarxes neuronals tipus spiking en temps real. S'han estudiat i analitzat alguns models de neurones tipus spiking rellevants i les seves implementacions en maquinari , amb la finalitat de crear una arquitectura que suporti la implementació d'aquests models de manera eficient . S'han tingut en compte diversos factors clau, incloent flexibilitat en la programació d'algorismes, processament d'alt rendiment, baix consum d'energia i àrea. S'han aplicat diverses tècniques en l'arquitectura desenvolupada amb el propòsit d'augmentar la seva capacitat de processament. Aquestes tècniques són: mapejat de temps a espai, virtualització de les neurones, mapeig flexible de neurones i sinapsis, modes d'execució, i aprenentatge específic, entre d'altres. A més, s'ha desenvolupat una unitat d'interfície de dades per tal de construir un sistema bio-inspirat, que pot processar informació sensorial del medi ambient. Aquest sistema basat en neurones tipus spiking combina implementacions analògiques i digitals. S'han desenvolupat diverses aplicacions usant aquest sistema com a prova de concepte, per tal de mostrar les capacitats de l'arquitectura proposada per al processament d'aquest tipus d'informació