Robust permanence for ecological equations with internal and external feedbacks.

Species experience both internal feedbacks with endogenous factors such as trait evolution and external feedbacks with exogenous factors such as weather. These feedbacks can play an important role in determining whether populations persist or communities of species coexist. To provide a general mathematical framework for studying these effects, we develop a theorem for coexistence for ecological models accounting for internal and external feedbacks. Specifically, we use average Lyapunov functions and Morse decompositions to develop sufficient and necessary conditions for robust permanence, a form of coexistence robust to large perturbations of the population densities and small structural perturbations of the models. We illustrate how our results can be applied to verify permanence in non-autonomous models, structured population models, including those with frequency-dependent feedbacks, and models of eco-evolutionary dynamics. In these applications, we discuss how our results relate to previous results for models with particular types of feedbacks

Optimal harvesting policy of a prey–predator model with Crowley–Martin-type functional response and stage structure in the predator

In this paper, a three-dimensional dynamical model consisting of a prey, a mature predator, and an immature predator is proposed and analysed. The interaction between prey and mature predator is assumed to be of the Crowley–Martin type, and both the prey and mature predator are harvested according to catch-per-unit-effort (CPUE) hypothesis. Steady state of the system is obtained, stability analysis (local and global both) are discussed to explore the long-time behaviour of the system. The optimal harvesting policy is also discussed with the help of Pontryagin's maximum principle. The harvesting effort is taken as an effective control instrument to preserve prey and predator and to maintain them at an optimal level

Studying Both Direct and Indirect Effects in Predator-Prey Interaction

Studying and modelling the interaction between predators and prey have been one of the central topics in ecology and evolutionary biology. In this thesis, we study two different aspects of predator-prey interaction: direct effect and indirect effect. Firstly, we study the direct predation between predators and prey in a patchy landscape. Secondly, we study indirect effects between predators and prey. Thirdly, we extend our previous model by incorporating a stage-structure into prey. Finally, we further extend our previous model by incorporating spatial structures into modelling

Dynamical Models of Biology and Medicine

Mathematical and computational modeling approaches in biological and medical research are experiencing rapid growth globally. This Special Issue Book intends to scratch the surface of this exciting phenomenon. The subject areas covered involve general mathematical methods and their applications in biology and medicine, with an emphasis on work related to mathematical and computational modeling of the complex dynamics observed in biological and medical research. Fourteen rigorously reviewed papers were included in this Special Issue. These papers cover several timely topics relating to classical population biology, fundamental biology, and modern medicine. While the authors of these papers dealt with very different modeling questions, they were all motivated by specific applications in biology and medicine and employed innovative mathematical and computational methods to study the complex dynamics of their models. We hope that these papers detail case studies that will inspire many additional mathematical modeling efforts in biology and medicin

Dynamics of marine zooplankton : social behavior ecological interactions, and physically-induced variability

Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution February 2008Marine ecosystems reflect the physical structure of their environment and the biological processes they carry out. This leads to spatial heterogeneity and temporal variability, some of which is imposed externally and some of which emerges from the ecological mechanisms themselves. The main focus of this thesis is on the formation of spatial patterns in the distribution of zooplankton arising from social interactions between individuals. In the Southern Ocean, krill often assemble in swarms and schools, the dynamics of which have important ecological consequences. Mathematical and numerical models are employed to study the interplay of biological and physical processes that contribute to the observed patchiness. The evolution of social behavior is simulated in a theoretical framework that includes zooplankton population dynamics, swimming behavior, and some aspects of the variability inherent to fluid environments. First, I formulate a model of resource utilization by a stage-structured predator population with density-dependent reproduction. Second, I incorporate the predator-prey dynamics into a spatially-explicit model, in which aggregations develop spontaneously as a result of linear instability of the uniform distribution. In this idealized ecosystem, benefits related to the local abundance of mates are offset by the cost of having to share resources with other group members. Third, I derive a weakly nonlinear approximation for the steady-state distributions of predator and prey biomass that captures the spatial patterns driven by social tendencies. Fourth, I simulate the schooling behavior of zooplankton in a variable environment; when turbulent flows generate patchiness in the resource field, schools can forage more efficiently than individuals. Taken together, these chapters demonstrate that aggregation/ schooling can indeed be the favored behavior when (i) reproduction (or other survival measures) increases with density in part of the range and (ii) mixing of prey into patches is rapid enough to offset the depletion. In the final two chapters, I consider sources of temporal variability in marine ecosystems. External perturbations amplified by nonlinear ecological interactions induce transient excursions away from equilibrium; in predator-prey dynamics the amplitude and duration of these transients are controlled by biological processes such as growth and mortality. In the Southern Ocean, large-scale winds associated with ENSO and the Southern Annular Mode cause convective mixing, which in turn drives air-sea fluxes of carbon dioxide and oxygen. Whether driven by stochastic fluctuations or by climatic phenomena, variability of the biogeochemical/physical environment has implications for ecosystem dynamics.Funding was provided by the Academic Programs Office of the MIT-WHOI Joint Program, an Ocean Ventures Fund Award, an Anonymous Ys Endowed Science Fellowship, and by NSF grants OCE-0221369 and OCE-336839

Dynamic analysis of a Leslie–Gower-type predator–prey system with the fear effect and ratio-dependent Holling III functional response

In this paper, we extend a Leslie–Gower-type predator–prey system with ratio-dependent Holling III functional response considering the cost of antipredator defence due to fear. We study the impact of the fear effect on the model, and we find that many interesting dynamical properties of the model can occur when the fear effect is present. Firstly, the relationship between the fear coefficient K and the positive equilibrium point is introduced. Meanwhile, the existence of the Turing instability, the Hopf bifurcation, and the Turing–Hopf bifurcation are analyzed by some key bifurcation parameters. Next, a normal form for the Turing–Hopf bifurcation is calculated. Finally, numerical simulations are carried out to corroborate our theoretical results

Controllability of an eco-epidemiological system with disease transmission delay: A theoretical study

This paper deals with the qualitative analysis of a disease transmission delay induced prey preda-tor system in which disease spreads among the predator species only. The growth of the preda-tors’ susceptible and infected subpopulations is assumed as modified Leslie–Gower type. Suffi-cient conditions for the persistence, permanence, existence and stability of equilibrium points are obtained. Global asymptotic stability of the system is investigated around the coexisting equilib-rium using a geometric approach. The existence of Hopf bifurcation phenomenon is also exam-ined with respect to some important parameters of the system. The criterion for disease a trans-mission delay the induced Hopf bifurcation phenomenon is obtained and subsequently, we use a normal form method and the center manifold theorem to examine the nature of the Hopf bifurca-tion. It is clearly observed that competition among predators can drive the system to a stable from an unstable state. Also the infection and competition among predator population enhance the availability of prey for harvesting when their values are high. Finally, some numerical simu-lations are carried out to illustrate the analytical results

The Relative Importance of Social Information Use for Population Abundance in Group-Living and Non-Grouping Prey

Predator–prey relationships are fundamental components of ecosystem functioning, within which the spatial consequences of prey social organization can alter predation rates. Group-living (GL) species are known to exploit inadvertent social information (ISI) that facilitates population persistence under predation risk. Still, the extent to which non-grouping (NG) prey can benefit from similar processes is unknown. Here we built an individual-based model to explore and compare the population-level consequences of ISI use in GL and NG prey. We differentiated between GL and NG prey only by the presence or absence of social attraction toward conspecifics that drives individual movement patterns. We found that the extent of the benefits of socially acquired predator information in NG highly depends on the prey’s ability to detect nearby predators, prey density and the occurrence of false alarms. Conversely, even moderate probabilities of ISI use and predator detection can lead to maximal population-level benefits in GL prey. This theoretical work provides additional insights into the conditions under which ISI use can facilitate population persistence irrespective of prey social organisation