On the automated compilation of UML notation to a VLIW chip multiprocessor

With the availability of more and more cores within architectures the process of extracting implicit and explicit parallelism in applications to fully utilise these cores is becoming complex. Implicit parallelism extraction is performed through the inclusion of intelligent software and hardware sections of tool chains although these reach their theoretical limit rather quickly. Due to this the concept of a method of allowing explicit parallelism to be performed as fast a possible has been investigated. This method enables application developers to perform creation and synchronisation of parallel sections of an application at a finer-grained level than previously possible, resulting in smaller sections of code being executed in parallel while still reducing overall execution time. Alongside explicit parallelism, a concept of high level design of applications destined for multicore systems was also investigated. As systems are getting larger it is becoming more difficult to design and track the full life-cycle of development. One method used to ease this process is to use a graphical design process to visualise the high level designs of such systems. One drawback in graphical design is the explicit nature in which systems are required to be generated, this was investigated, and using concepts already in use in text based programming languages, the generation of platform-independent models which are able to be specialised to multiple hardware architectures was developed. The explicit parallelism was performed using hardware elements to perform thread management, this resulted in speed ups of over 13 times when compared to threading libraries executed in software on commercially available processors. This allowed applications with large data dependent sections to be parallelised in small sections within the code resulting in a decrease of overall execution time. The modelling concepts resulted in the saving of between 40-50% of the time and effort required to generate platform-specific models while only incurring an overhead of up to 15% the execution cycles of these models designed for specific architectures

The Parallelism Motifs of Genomic Data Analysis

Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and share this data with the research community, but some of these genomic data analysis problems require large scale computational platforms to meet both the memory and computational requirements. These applications differ from scientific simulations that dominate the workload on high end parallel systems today and place different requirements on programming support, software libraries, and parallel architectural design. For example, they involve irregular communication patterns such as asynchronous updates to shared data structures. We consider several problems in high performance genomics analysis, including alignment, profiling, clustering, and assembly for both single genomes and metagenomes. We identify some of the common computational patterns or motifs that help inform parallelization strategies and compare our motifs to some of the established lists, arguing that at least two key patterns, sorting and hashing, are missing

MURAC: A unified machine model for heterogeneous computers

Includes bibliographical referencesHeterogeneous computing enables the performance and energy advantages of multiple distinct processing architectures to be efficiently exploited within a single machine. These systems are capable of delivering large performance increases by matching the applications to architectures that are most suited to them. The Multiple Runtime-reconfigurable Architecture Computer (MURAC) model has been proposed to tackle the problems commonly found in the design and usage of these machines. This model presents a system-level approach that creates a clear separation of concerns between the system implementer and the application developer. The three key concepts that make up the MURAC model are a unified machine model, a unified instruction stream and a unified memory space. A simple programming model built upon these abstractions provides a consistent interface for interacting with the underlying machine to the user application. This programming model simplifies application partitioning between hardware and software and allows the easy integration of different execution models within the single control ow of a mixed-architecture application. The theoretical and practical trade-offs of the proposed model have been explored through the design of several systems. An instruction-accurate system simulator has been developed that supports the simulated execution of mixed-architecture applications. An embedded System-on-Chip implementation has been used to measure the overhead in hardware resources required to support the model, which was found to be minimal. An implementation of the model within an operating system on a tightly-coupled reconfigurable processor platform has been created. This implementation is used to extend the software scheduler to allow for the full support of mixed-architecture applications in a multitasking environment. Different scheduling strategies have been tested using this scheduler for mixed-architecture applications. The design and implementation of these systems has shown that a unified abstraction model for heterogeneous computers provides important usability benefits to system and application designers. These benefits are achieved through a consistent view of the multiple different architectures to the operating system and user applications. This allows them to focus on achieving their performance and efficiency goals by gaining the benefits of different execution models during runtime without the complex implementation details of the system-level synchronisation and coordination

Power efficient dataflow design for a heterogeneous smart camera architecture

Visual attention modelling characterises the scene to segment regions of visual interest and is increasingly being used as a pre-processing step in many computer vision applications including surveillance and security. Smart camera architectures are an emerging technology and a foundation of security and safety frameworks in modern vision systems. In this paper, we present a dataflow design of a visual saliency based camera architecture targeting a heterogeneous CPU+FPGA platform to propose a smart camera network infrastructure. The proposed design flow encompasses image processing algorithm implementation, hardware & software integration and network connectivity through a unified model. By leveraging the properties of the dataflow paradigm, we iteratively refine the algorithm specification into a deployable solution, addressing distinct requirements at each design stage: from algorithm accuracy to hardware-software interactions, real-time execution and power consumption. Our design achieved real-time run time performance and the power consumption of the optimised asynchronous design is reported at only 0.25 Watt. The resource usages on a Xilinx Zynq platform remains significantly low

Analysis and Optimization of Scientific Applications through Set and Relation Abstractions

Writing high performance code has steadily become more challenging since the design of computing systems has moved toward parallel processors in forms of multi and many-core architectures. This trend has resulted in exceedingly more heterogeneous architectures and programming models. Moreover, the prevalence of distributed systems, especially in fields relying on supercomputers, has caused the programming of such diverse environment more difficulties. To mitigate such challenges, an assortment of tools and programming models have been introduced in the past decade or so. Some efforts focused on the characteristics of the code, such as polyhedral compilers (e.g. Pluto, PPCG, etc.) while others took in consideration the aspects of the application domain and proposed domain specific languages (DSLs). DSLs are developed either in the form of a stand-alone language, like Halide for image processing, or as a part of a general purpose language (e.g., Firedrake- a DSL embedded in Python for solving PDEs using FEM.) called embedded. All these approaches attempt to provide the best input to the underlying common programming models like MPI and OpenMP for distributed and shared memory systems respectively. This dissertation introduces Kaashi, a high-level run-time system, embedded in C++ language, designed to manage memory and execution order of programs with large input data and complex dependencies. Kaashi provides a uniform front-end to multiple back-ends focusing on distributed systems. Kaashi abstractions allows the programmer to define the problem’s data domain as a collection of sets and relations between pairs of such sets. The aforesaid level of abstraction could enable series of optimizations which, otherwise, are very expensive to detect or not feasible at all. Furthermore, Kaashi’s API helps novice programmers to write their code more structurally without getting involved in details of data management and communication

EXODUS: Integrating intelligent systems for launch operations support

Kennedy Space Center (KSC) is developing knowledge-based systems to automate critical operations functions for the space shuttle fleet. Intelligent systems will monitor vehicle and ground support subsystems for anomalies, assist in isolating and managing faults, and plan and schedule shuttle operations activities. These applications are being developed independently of one another, using different representation schemes, reasoning and control models, and hardware platforms. KSC has recently initiated the EXODUS project to integrate these stand alone applications into a unified, coordinated intelligent operations support system. EXODUS will be constructed using SOCIAL, a tool for developing distributed intelligent systems. EXODUS, SOCIAL, and initial prototyping efforts using SOCIAL to integrate and coordinate selected EXODUS applications are described

Improving low latency applications for reconfigurable devices

This thesis seeks to improve low latency application performance via architectural improvements in reconfigurable devices. This is achieved by improving resource utilisation and access, and by exploiting the different environments within which reconfigurable devices are deployed. Our first contribution leverages devices deployed at the network level to enable the low latency processing of financial market data feeds. Financial exchanges transmit messages via two identical data feeds to reduce the chance of message loss. We present an approach to arbitrate these redundant feeds at the network level using a Field-Programmable Gate Array (FPGA). With support for any messaging protocol, we evaluate our design using the NASDAQ TotalView-ITCH, OPRA, and ARCA data feed protocols, and provide two simultaneous outputs: one prioritising low latency, and one prioritising high reliability with three dynamically configurable windowing methods. Our second contribution is a new ring-based architecture for low latency, parallel access to FPGA memory. Traditional FPGA memory is formed by grouping block memories (BRAMs) together and accessing them as a single device. Our architecture accesses these BRAMs independently and in parallel. Targeting memory-based computing, which stores pre-computed function results in memory, we benefit low latency applications that rely on: highly-complex functions; iterative computation; or many parallel accesses to a shared resource. We assess square root, power, trigonometric, and hyperbolic functions within the FPGA, and provide a tool to convert Python functions to our new architecture. Our third contribution extends the ring-based architecture to support any FPGA processing element. We unify E heterogeneous processing elements within compute pools, with each element implementing the same function, and the pool serving D parallel function calls. Our implementation-agnostic approach supports processing elements with different latencies, implementations, and pipeline lengths, as well as non-deterministic latencies. Compute pools evenly balance access to processing elements across the entire application, and are evaluated by implementing eight different neural network activation functions within an FPGA.Open Acces

Modeling and Mapping of Optimized Schedules for Embedded Signal Processing Systems

The demand for Digital Signal Processing (DSP) in embedded systems has been increasing rapidly due to the proliferation of multimedia- and communication-intensive devices such as pervasive tablets and smart phones. Efficient implementation of embedded DSP systems requires integration of diverse hardware and software components, as well as dynamic workload distribution across heterogeneous computational resources. The former implies increased complexity of application modeling and analysis, but also brings enhanced potential for achieving improved energy consumption, cost or performance. The latter results from the increased use of dynamic behavior in embedded DSP applications. Furthermore, parallel programming is highly relevant in many embedded DSP areas due to the development and use of Multiprocessor System-On-Chip (MPSoC) technology. The need for efficient cooperation among different devices supporting diverse parallel embedded computations motivates high-level modeling that expresses dynamic signal processing behaviors and supports efficient task scheduling and hardware mapping. Starting with dynamic modeling, this thesis develops a systematic design methodology that supports functional simulation and hardware mapping of dynamic reconfiguration based on Parameterized Synchronous Dataflow (PSDF) graphs. By building on the DIF (Dataflow Interchange Format), which is a design language and associated software package for developing and experimenting with dataflow-based design techniques for signal processing systems, we have developed a novel tool for functional simulation of PSDF specifications. This simulation tool allows designers to model applications in PSDF and simulate their functionality, including use of the dynamic parameter reconfiguration capabilities offered by PSDF. With the help of this simulation tool, our design methodology helps to map PSDF specifications into efficient implementations on field programmable gate arrays (FPGAs). Furthermore, valid schedules can be derived from the PSDF models at runtime to adapt hardware configurations based on changing data characteristics or operational requirements. Under certain conditions, efficient quasi-static schedules can be applied to reduce overhead and enhance predictability in the scheduling process. Motivated by the fact that scheduling is critical to performance and to efficient use of dynamic reconfiguration, we have focused on a methodology for schedule design, which complements the emphasis on automated schedule construction in the existing literature on dataflow-based design and implementation. In particular, we have proposed a dataflow-based schedule design framework called the dataflow schedule graph (DSG), which provides a graphical framework for schedule construction based on dataflow semantics, and can also be used as an intermediate representation target for automated schedule generation. Our approach to applying the DSG in this thesis emphasizes schedule construction as a design process rather than an outcome of the synthesis process. Our approach employs dataflow graphs for representing both application models and schedules that are derived from them. By providing a dataflow-integrated framework for unambiguously representing, analyzing, manipulating, and interchanging schedules, the DSG facilitates effective codesign of dataflow-based application models and schedules for execution of these models. As multicore processors are deployed in an increasing variety of embedded image processing systems, effective utilization of resources such as multiprocessor systemon-chip (MPSoC) devices, and effective handling of implementation concerns such as memory management and I/O become critical to developing efficient embedded implementations. However, the diversity and complexity of applications and architectures in embedded image processing systems make the mapping of applications onto MPSoCs difficult. We help to address this challenge through a structured design methodology that is built upon the DSG modeling framework. We refer to this methodology as the DEIPS methodology (DSG-based design and implementation of Embedded Image Processing Systems). The DEIPS methodology provides a unified framework for joint consideration of DSG structures and the application graphs from which they are derived, which allows designers to integrate considerations of parallelization and resource constraints together with the application modeling process. We demonstrate the DEIPS methodology through cases studies on practical embedded image processing systems

Syntactic Computation as Labelled Deduction: WH a case study

This paper addresses the question "Why do WH phenomena occur with the particular cluster of properties observed across languages -- long-distance dependencies, WH-in situ, partial movement constructions, reconstruction, crossover etc." These phenomena have been analysed by invoking a number of discrete principles and categories, but have so far resisted a unified treatment. The explanation proposed is set within a model of natural language understanding in context, where the task of understanding is taken to be the incremental building of a structure over which the semantic content is defined. The formal model is a composite of a labelled type-deduction system, a modal tree logic, and a set of rules for describing the process of interpreting the string as a set of transition states. A dynamic concept of syntax results, in which in addition to an output structure associated with each string (analogous to the level of LF), there is in addition an explicit meta-level description of the process whereby this incremental process takes place. This paper argues that WH-related phenomena can be unified by adopting this dynamic perspective. The main focus of the paper is on WH-initial structures, WH in situ structures, partial movement phenomena, and crossover phenomena. In each case, an analysis is proposed which emerges from the general characterisatioan of WH structures without construction-specific stipulation.Articl

An automated OpenCL FPGA compilation framework targeting a configurable, VLIW chip multiprocessor

Modern system-on-chips augment their baseline CPU with coprocessors and accelerators to increase overall computational capacity and power efficiency, and thus have evolved into heterogeneous systems. Several languages have been developed to enable this paradigm shift, including CUDA and OpenCL. This thesis discusses a unified compilation environment to enable heterogeneous system design through the use of OpenCL and a customised VLIW chip multiprocessor (CMP) architecture, known as the LE1. An LLVM compilation framework was researched and a prototype developed to enable the execution of OpenCL applications on the LE1 CPU. The framework fully automates the compilation flow and supports work-item coalescing to better utilise the CPU cores and alleviate the effects of thread divergence. This thesis discusses in detail both the software stack and target hardware architecture and evaluates the scalability of the proposed framework on a highly precise cycle-accurate simulator. This is achieved through the execution of 12 benchmarks across 240 different machine configurations, as well as further results utilising an incomplete development branch of the compiler. It is shown that the problems generally scale well with the LE1 architecture, up to eight cores, when the memory system becomes a serious bottleneck. Results demonstrate superlinear performance on certain benchmarks (x9 for the bitonic sort benchmark with 8 dual-issue cores) with further improvements from compiler optimisations (x14 for bitonic with the same configuration