Doctor of Philosophy

dissertationThe increase in computational power of supercomputers is enabling complex scientific phenomena to be simulated at ever-increasing resolution and fidelity. With these simulations routinely producing large volumes of data, performing efficient I/O at this scale has become a very difficult task. Large-scale parallel writes are challenging due to the complex interdependencies between I/O middleware and hardware. Analytic-appropriate reads are traditionally hindered by bottlenecks in I/O access. Moreover, the two components of I/O, data generation from simulations (writes) and data exploration for analysis and visualization (reads), have substantially different data access requirements. Parallel writes, performed on supercomputers, often deploy aggregation strategies to permit large-sized contiguous access. Analysis and visualization tasks, usually performed on computationally modest resources, require fast access to localized subsets or multiresolution representations of the data. This dissertation tackles the problem of parallel I/O while bridging the gap between large-scale writes and analytics-appropriate reads. The focus of this work is to develop an end-to-end adaptive-resolution data movement framework that provides efficient I/O, while supporting the full spectrum of modern HPC hardware. This is achieved by developing technology for highly scalable and tunable parallel I/O, applicable to both traditional parallel data formats and multiresolution data formats, which are directly appropriate for analysis and visualization. To demonstrate the efficacy of the approach, a novel library (PIDX) is developed that is highly tunable and capable of adaptive-resolution parallel I/O to a multiresolution data format. Adaptive resolution storage and I/O, which allows subsets of a simulation to be accessed at varying spatial resolutions, can yield significant improvements to both the storage performance and I/O time. The library provides a set of parameters that controls the storage format and the nature of data aggregation across he network; further, a machine learning-based model is constructed that tunes these parameters for the maximum throughput. This work is empirically demonstrated by showing parallel I/O scaling up to 768K cores within a framework flexible enough to handle adaptive resolution I/O

Storage Solutions for Big Data Systems: A Qualitative Study and Comparison

Big data systems development is full of challenges in view of the variety of application areas and domains that this technology promises to serve. Typically, fundamental design decisions involved in big data systems design include choosing appropriate storage and computing infrastructures. In this age of heterogeneous systems that integrate different technologies for optimized solution to a specific real world problem, big data system are not an exception to any such rule. As far as the storage aspect of any big data system is concerned, the primary facet in this regard is a storage infrastructure and NoSQL seems to be the right technology that fulfills its requirements. However, every big data application has variable data characteristics and thus, the corresponding data fits into a different data model. This paper presents feature and use case analysis and comparison of the four main data models namely document oriented, key value, graph and wide column. Moreover, a feature analysis of 80 NoSQL solutions has been provided, elaborating on the criteria and points that a developer must consider while making a possible choice. Typically, big data storage needs to communicate with the execution engine and other processing and visualization technologies to create a comprehensive solution. This brings forth second facet of big data storage, big data file formats, into picture. The second half of the research paper compares the advantages, shortcomings and possible use cases of available big data file formats for Hadoop, which is the foundation for most big data computing technologies. Decentralized storage and blockchain are seen as the next generation of big data storage and its challenges and future prospects have also been discussed

Approachable Error Bounded Lossy Compression

Compression is commonly used in HPC applications to move and store data. Traditional lossless compression, however, does not provide adequate compression of floating point data often found in scientific codes. Recently, researchers and scientists have turned to lossy compression techniques that approximate the original data rather than reproduce it in order to achieve desired levels of compression. Typical lossy compressors do not bound the errors introduced into the data, leading to the development of error bounded lossy compressors (EBLC). These tools provide the desired levels of compression as mathematical guarantees on the errors introduced. However, the current state of EBLC leaves much to be desired. The existing EBLC all have different interfaces requiring codes to be changed to adopt new techniques; EBLC have many more configuration options than their predecessors, making them more difficult to use; and EBLC typically bound quantities like point wise errors rather than higher level metrics such as spectra, p-values, or test statistics that scientists typically use. My dissertation aims to provide a uniform interface to compression and to develop tools to allow application scientists to understand and apply EBLC. This dissertation proposal presents three groups of work: LibPressio, a standard interface for compression and analysis; FRaZ/LibPressio-Opt frameworks for the automated configuration of compressors using LibPressio; and work on tools for analyzing errors in particular domains

Information Access Using Neural Networks For Diverse Domains And Sources

The ever-increasing volume of web-based documents poses a challenge in efficiently accessing specialized knowledge from domain-specific sources, requiring a profound understanding of the domain and substantial comprehension effort. Although natural language technologies, such as information retrieval and machine reading compression systems, offer rapid and accurate information retrieval, their performance in specific domains is hindered by training on general domain datasets. Creating domain-specific training datasets, while effective, is time-consuming, expensive, and heavily reliant on domain experts. This thesis presents a comprehensive exploration of efficient technologies to address the challenge of information access in specific domains, focusing on retrieval-based systems encompassing question answering and ranking. We begin with a comprehensive introduction to the information access system. We demonstrated the structure of a information access system through a typical open-domain question-answering task. We outline its two major components: retrieval and reader models, and the design choice for each part. We focus on mainly three points: 1) the design choice of the connection of the two components. 2) the trade-off associated with the retrieval model and the best frontier in practice. 3) a data augmentation method to adapt the reader model, trained initially on closed-domain datasets, to effectively answer questions in the retrieval-based setting. Subsequently, we discuss various methods enabling system adaptation to specific domains. Transfer learning techniques are presented, including generation as data augmentation, further pre-training, and progressive domain-clustered training. We also present a novel zero-shot re-ranking method inspired by the compression-based distance. We summarize the conclusions and findings gathered from the experiments. Moreover, the exploration extends to retrieval-based systems beyond textual corpora. We explored the search system for an e-commerce database, wherein natural language queries are combined with user preference data to facilitate the retrieval of relevant products. To address the challenges, including noisy labels and cold start problems, for the retrieval-based e-commerce ranking system, we enhanced model training through cascaded training and adversarial sample weighting. Another scenario we investigated is the search system in the math domain, characterized by the unique role of formulas and distinct features compared to textual searches. We tackle the math related search problem by combining neural ranking models with structual optimized algorithms. Finally, we summarize the research findings and future research directions

Compiler-centric across-stack deep learning acceleration

Optimizing the deployment of Deep Neural Networks (DNNs) is hard. Despite deep learning approaches increasingly providing state-of-the-art solutions to a variety of difficult problems, such as computer vision and natural language processing, DNNs can be prohibitively expensive, for example, in terms of inference time or memory usage. Effective exploration of the design space requires a holistic approach, including a range of topics from machine learning, systems, and hardware. The rapid proliferation of deep learning applications has raised demand for efficient exploration and acceleration of deep learning based solutions. However, managing the range of optimization techniques, as well as how they interact with each other across the stack is a non-trivial task. A family of emerging specialized compilers for deep learning, tensor compilers, appear to be a strong candidate to help manage the complexity of across-stack optimization choices, and enable new approaches. This thesis presents new techniques and explorations of the Deep Learning Acceleration Stack (DLAS), with the perspective that the tensor compiler will increasingly be the center of this stack. First, we motivate the challenges in exploring DLAS, by describing the experience of running a perturbation study varying parameters at every layer of the stack. The core of the study is implemented using a tensor compiler, which reduces the complexity of evaluating the wide range of variants, although still requires a significant engineering effort to realize. Next, we develop a new algorithm for grouped convolution, a model optimization technique for which existing solutions provided poor inference time scaling. We implement and optimize our algorithm using a tensor compiler, outperforming existing approaches by 5.1× on average (arithmetic mean). Finally, we propose a technique, transfer-tuning, to reduce the search time required for automatic tensor compiler code optimization, reducing the search time required by 6.5× on average. The techniques and contributions of this thesis across these interconnected domains demonstrate the exciting potential of tensor compilers to simplify and improve design space exploration for DNNs, and their deployment. The outcomes of this thesis enable new lines of research to enable machine learning developers to keep up with the rapidly evolving landscape of neural architectures and hardware

OmniForce: On Human-Centered, Large Model Empowered and Cloud-Edge Collaborative AutoML System

Automated machine learning (AutoML) seeks to build ML models with minimal human effort. While considerable research has been conducted in the area of AutoML in general, aiming to take humans out of the loop when building artificial intelligence (AI) applications, scant literature has focused on how AutoML works well in open-environment scenarios such as the process of training and updating large models, industrial supply chains or the industrial metaverse, where people often face open-loop problems during the search process: they must continuously collect data, update data and models, satisfy the requirements of the development and deployment environment, support massive devices, modify evaluation metrics, etc. Addressing the open-environment issue with pure data-driven approaches requires considerable data, computing resources, and effort from dedicated data engineers, making current AutoML systems and platforms inefficient and computationally intractable. Human-computer interaction is a practical and feasible way to tackle the problem of open-environment AI. In this paper, we introduce OmniForce, a human-centered AutoML (HAML) system that yields both human-assisted ML and ML-assisted human techniques, to put an AutoML system into practice and build adaptive AI in open-environment scenarios. Specifically, we present OmniForce in terms of ML version management; pipeline-driven development and deployment collaborations; a flexible search strategy framework; and widely provisioned and crowdsourced application algorithms, including large models. Furthermore, the (large) models constructed by OmniForce can be automatically turned into remote services in a few minutes; this process is dubbed model as a service (MaaS). Experimental results obtained in multiple search spaces and real-world use cases demonstrate the efficacy and efficiency of OmniForce

PERICLES Deliverable 4.3:Content Semantics and Use Context Analysis Techniques

The current deliverable summarises the work conducted within task T4.3 of WP4, focusing on the extraction and the subsequent analysis of semantic information from digital content, which is imperative for its preservability. More specifically, the deliverable defines content semantic information from a visual and textual perspective, explains how this information can be exploited in long-term digital preservation and proposes novel approaches for extracting this information in a scalable manner. Additionally, the deliverable discusses novel techniques for retrieving and analysing the context of use of digital objects. Although this topic has not been extensively studied by existing literature, we believe use context is vital in augmenting the semantic information and maintaining the usability and preservability of the digital objects, as well as their ability to be accurately interpreted as initially intended.PERICLE