Topology-aware GPU scheduling for learning workloads in cloud environments

Recent advances in hardware, such as systems with multiple GPUs and their availability in the cloud, are enabling deep learning in various domains including health care, autonomous vehicles, and Internet of Things. Multi-GPU systems exhibit complex connectivity among GPUs and between GPUs and CPUs. Workload schedulers must consider hardware topology and workload communication requirements in order to allocate CPU and GPU resources for optimal execution time and improved utilization in shared cloud environments. This paper presents a new topology-aware workload placement strategy to schedule deep learning jobs on multi-GPU systems. The placement strategy is evaluated with a prototype on a Power8 machine with Tesla P100 cards, showing speedups of up to ≈1.30x compared to state-of-the-art strategies; the proposed algorithm achieves this result by allocating GPUs that satisfy workload requirements while preventing interference. Additionally, a large-scale simulation shows that the proposed strategy provides higher resource utilization and performance in cloud systems.This project is supported by the IBM/BSC Technology Center for Supercomputing collaboration agreement. It has also received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 639595). It is also partially supported by the Ministry of Economy of Spain under contract TIN2015-65316-P and Generalitat de Catalunya under contract 2014SGR1051, by the ICREA Academia program, and by the BSC-CNS Severo Ochoa program (SEV-2015-0493). We thank our IBM Research colleagues Alaa Youssef and Asser Tantawi for the valuable discussions. We also thank SC17 committee member Blair Bethwaite of Monash University for his constructive feedback on the earlier drafts of this paper.Peer ReviewedPostprint (published version

HPC Cloud for Scientific and Business Applications: Taxonomy, Vision, and Research Challenges

High Performance Computing (HPC) clouds are becoming an alternative to on-premise clusters for executing scientific applications and business analytics services. Most research efforts in HPC cloud aim to understand the cost-benefit of moving resource-intensive applications from on-premise environments to public cloud platforms. Industry trends show hybrid environments are the natural path to get the best of the on-premise and cloud resources---steady (and sensitive) workloads can run on on-premise resources and peak demand can leverage remote resources in a pay-as-you-go manner. Nevertheless, there are plenty of questions to be answered in HPC cloud, which range from how to extract the best performance of an unknown underlying platform to what services are essential to make its usage easier. Moreover, the discussion on the right pricing and contractual models to fit small and large users is relevant for the sustainability of HPC clouds. This paper brings a survey and taxonomy of efforts in HPC cloud and a vision on what we believe is ahead of us, including a set of research challenges that, once tackled, can help advance businesses and scientific discoveries. This becomes particularly relevant due to the fast increasing wave of new HPC applications coming from big data and artificial intelligence.Comment: 29 pages, 5 figures, Published in ACM Computing Surveys (CSUR

Leveraging disaggregated accelerators and non-volatile memories to improve the efficiency of modern datacenters

(English) Traditional data centers consist of computing nodes that possess all the resources physically attached. When there was the need to deal with more significant demands, the solution has been to either add more nodes (scaling out) or increase the capacity of existing ones (scaling-up). Workload requirements are traditionally fulfilled by selecting compute platforms from pools that better satisfy their average or maximum resource requirements depending on the price that the user is willing to pay. The amount of processor, memory, storage, and network bandwidth of a selected platform needs to meet or exceed the platform requirements of the workload. Beyond those explicitly required by the workload, additional resources are considered stranded resources (if not used) or bonus resources (if used). Meanwhile, workloads in all market segments have evolved significantly during the last decades. Today, workloads have a larger variety of requirements in terms of characteristics related to the computing platforms. Those workload new requirements include new technologies such as GPU, FPGA, NVMe, etc. These new technologies are more expensive and thus become more limited. It is no longer feasible to increase the number of resources according to potential peak demands, as this significantly raises the total cost of ownership. Software-Defined-Infrastructures (SDI), a new concept for the data center architecture, is being developed to address those issues. The main SDI proposition is to disaggregate all the resources over the fabric to enable the required flexibility. On SDI, instead of pools of computational nodes, the pools consist of individual units of resources (CPU, memory, FPGA, NVMe, GPU, etc.). When an application needs to be executed, SDI identifies the computational requirements and assembles all the resources required, creating a composite node. Resource disaggregation brings new challenges and opportunities that this thesis will explore. This thesis demonstrates that resource disaggregation brings opportunities to increase the efficiency of modern data centers. This thesis demonstrates that resource disaggregation may increase workloads' performance when sharing a single resource. Thus, needing fewer resources to achieve similar results. On the other hand, this thesis demonstrates how through disaggregation, aggregation of resources can be made, increasing a workload's performance. However, to take maximum advantage of those characteristics and flexibility, orchestrators must be aware of them. This thesis demonstrates how workload-aware techniques applied at the resource management level allow for improved quality of service leveraging resource disaggregation. Enabling resource disaggregation, this thesis demonstrates a reduction of up to 49% missed deadlines compared to a traditional schema. This reduction can rise up to 100% when enabling workload awareness. Moreover, this thesis demonstrates that GPU partitioning and disaggregation further enhances the data center flexibility. This increased flexibility can achieve the same results with half the resources. That is, with a single physical GPU partitioned and disaggregated, the same results can be achieved with 2 GPU disaggregated but not partitioned. Finally, this thesis demonstrates that resource fragmentation becomes key when having a limited set of heterogeneous resources, namely NVMe and GPU. For the case of an heterogeneous set of resources, and specifically when some of those resources are highly demanded but limited in quantity. That is, the situation where the demand for a resource is unexpectedly high, this thesis proposes a technique to minimize fragmentation that reduces deadlines missed compared to a disaggregation-aware policy of up to 86%.(Català) Els datacenters tradicionals consisteixen en un seguit de nodes computacionals que contenen al seu interior tots els recursos necessaris. Quan hi ha una necessitat de gestionar demandes superiors la solució era o afegir més nodes (scale-out) o incrementar la capacitat dels existents (scale-up). Els requisits de les aplicacions tradicionalment són satisfets seleccionant recursos de racks que satisfan millor el seu SLA basats o en la mitjana dels requisits o en el màxim possible, en funció del preu que l'usuari estigui disposat a pagar. La quantitat de processadors, memòria, disc, i banda d'ampla d'un rack necessita satisfer o excedir els requisits de l'aplicació. Els recursos addicionals als requerits per les aplicacions són considerats inactius (si no es fan servir) o addicionals (si es fan servir). Per altra banda, les aplicacions en tots els segments de mercat han evolucionat significativament en les últimes dècades. Avui en dia, les aplicacions tenen una gran varietat de requisits en termes de característiques que ha de tenir la infraestructura. Aquests nous requisits inclouen tecnologies com GPU, FPGA, NVMe, etc. Aquestes tecnologies són més cares i, per tant, més limitades. Ja no és factible incrementar el nombre de recursos segons el potencial pic de demanda, ja que això incrementa significativament el cost total de la infraestructura. Software-Defined Infrastructures és un nou concepte per a l'arquitectura de datacenters que s'està desenvolupant per pal·liar aquests problemes. La proposició principal de SDI és desagregar tots els recursos sobre la xarxa per garantir una major flexibilitat. Sota SDI, en comptes de racks de nodes computacionals, els racks consisteix en unitats individuals de recursos (CPU, memòria, FPGA, NVMe, GPU, etc). Quan una aplicació necessita executar, SDI identifica els requisits computacionals i munta una plataforma amb tots els recursos necessaris, creant un node composat. La desagregació de recursos porta nous reptes i oportunitats que s'exploren en aquesta tesi. Aquesta tesi demostra que la desagregació de recursos ens dona l'oportunitat d'incrementar l'eficiència dels datacenters moderns. Aquesta tesi demostra la desagregació pot incrementar el rendiment de les aplicacions. Però per treure el màxim partit a aquestes característiques i d'aquesta flexibilitat, els orquestradors n'han de ser conscient. Aquesta tesi demostra que aplicant tècniques conscients de l'aplicació aplicades a la gestió de recursos permeten millorar la qualitat del servei a través de la desagregació de recursos. Habilitar la desagregació de recursos porta a una reducció de fins al 49% els deadlines perduts comparat a una política tradicional. Aquesta reducció pot incrementar-se fins al 100% quan s'habilita la consciència de l'aplicació. A més a més, aquesta tesi demostra que el particionat de GPU combinat amb la desagregació millora encara més la flexibilitat. Aquesta millora permet aconseguir els mateixos resultats amb la meitat de recursos. És a dir, amb una sola GPU física particionada i desagregada, els mateixos resultats són obtinguts que utilitzant-ne dues desagregades però no particionades. Finalment, aquesta tesi demostra que la gestió de la fragmentació de recursos és una peça clau quan la quantitat de recursos és limitada en un conjunt heterogeni de recursos. Pel cas d'un conjunt heterogeni de recursos, i especialment quan aquests recursos tenen molta demanda però són limitats en quantitat. És a dir, quan la demanda pels recursos és inesperadament alta, aquesta tesi proposa una tècnica minimitzant la fragmentació que redueix els deadlines perduts comparats a una política de desagregació de fins al 86%.Arquitectura de computador

TensorFlow Doing HPC

TensorFlow is a popular emerging open-source programming framework supporting the execution of distributed applications on heterogeneous hardware. While TensorFlow has been initially designed for developing Machine Learning (ML) applications, in fact TensorFlow aims at supporting the development of a much broader range of application kinds that are outside the ML domain and can possibly include HPC applications. However, very few experiments have been conducted to evaluate TensorFlow performance when running HPC workloads on supercomputers. This work addresses this lack by designing four traditional HPC benchmark applications: STREAM, matrix-matrix multiply, Conjugate Gradient (CG) solver and Fast Fourier Transform (FFT). We analyze their performance on two supercomputers with accelerators and evaluate the potential of TensorFlow for developing HPC applications. Our tests show that TensorFlow can fully take advantage of high performance networks and accelerators on supercomputers. Running our TensorFlow STREAM benchmark, we obtain over 50% of theoretical communication bandwidth on our testing platform. We find an approximately 2x, 1.7x and 1.8x performance improvement when increasing the number of GPUs from two to four in the matrix-matrix multiply, CG and FFT applications respectively. All our performance results demonstrate that TensorFlow has high potential of emerging also as HPC programming framework for heterogeneous supercomputers.Comment: Accepted for publication at The Ninth International Workshop on Accelerators and Hybrid Exascale Systems (AsHES'19

LEGaTO: first steps towards energy-efficient toolset for heterogeneous computing

LEGaTO is a three-year EU H2020 project which started in December 2017. The LEGaTO project will leverage task-based programming models to provide a software ecosystem for Made-in-Europe heterogeneous hardware composed of CPUs, GPUs, FPGAs and dataflow engines. The aim is to attain one order of magnitude energy savings from the edge to the converged cloud/HPC.Peer ReviewedPostprint (author's final draft

The Glasgow raspberry pi cloud: a scale model for cloud computing infrastructures

Data Centers (DC) used to support Cloud services often consist of tens of thousands of networked machines under a single roof. The significant capital outlay required to replicate such infrastructures constitutes a major obstacle to practical implementation and evaluation of research in this domain. Currently, most research into Cloud computing relies on either limited software simulation, or the use of a testbed environments with a handful of machines. The recent introduction of the Raspberry Pi, a low-cost, low-power single-board computer, has made the construction of a miniature Cloud DCs more affordable. In this paper, we present the Glasgow Raspberry Pi Cloud (PiCloud), a scale model of a DC composed of clusters of Raspberry Pi devices. The PiCloud emulates every layer of a Cloud stack, ranging from resource virtualisation to network behaviour, providing a full-featured Cloud Computing research and educational environment

Heterogeneity-aware scheduling and data partitioning for system performance acceleration

Over the past decade, heterogeneous processors and accelerators have become increasingly prevalent in modern computing systems. Compared with previous homogeneous parallel machines, the hardware heterogeneity in modern systems provides new opportunities and challenges for performance acceleration. Classic operating systems optimisation problems such as task scheduling, and application-specific optimisation techniques such as the adaptive data partitioning of parallel algorithms, are both required to work together to address hardware heterogeneity. Significant effort has been invested in this problem, but either focuses on a specific type of heterogeneous systems or algorithm, or a high-level framework without insight into the difference in heterogeneity between different types of system. A general software framework is required, which can not only be adapted to multiple types of systems and workloads, but is also equipped with the techniques to address a variety of hardware heterogeneity. This thesis presents approaches to design general heterogeneity-aware software frameworks for system performance acceleration. It covers a wide variety of systems, including an OS scheduler targeting on-chip asymmetric multi-core processors (AMPs) on mobile devices, a hierarchical many-core supercomputer and multi-FPGA systems for high performance computing (HPC) centers. Considering heterogeneity from on-chip AMPs, such as thread criticality, core sensitivity, and relative fairness, it suggests a collaborative based approach to co-design the task selector and core allocator on OS scheduler. Considering the typical sources of heterogeneity in HPC systems, such as the memory hierarchy, bandwidth limitations and asymmetric physical connection, it proposes an application-specific automatic data partitioning method for a modern supercomputer, and a topological-ranking heuristic based schedule for a multi-FPGA based reconfigurable cluster. Experiments on both a full system simulator (GEM5) and real systems (Sunway Taihulight Supercomputer and Xilinx Multi-FPGA based clusters) demonstrate the significant advantages of the suggested approaches compared against the state-of-the-art on variety of workloads."This work is supported by St Leonards 7th Century Scholarship and Computer Science PhD funding from University of St Andrews; by UK EPSRC grant Discovery: Pattern Discovery and Program Shaping for Manycore Systems (EP/P020631/1)." -- Acknowledgement