On some one-sided dynamics of cellular automata

A dynamical system consists of a space of all possible world states and a transformation of said space. Cellular automata are dynamical systems where the space is a set of one- or two-way infinite symbol sequences and the transformation is defined by a homogenous local rule. In the setting of cellular automata, the geometry of the underlying space allows one to define one-sided variants of some dynamical properties; this thesis considers some such one-sided dynamics of cellular automata. One main topic are the dynamical concepts of expansivity and that of pseudo-orbit tracing property. Expansivity is a strong form of sensitivity to the initial conditions while pseudo-orbit tracing property is a type of approximability. For cellular automata we define one-sided variants of both of these concepts. We give some examples of cellular automata with these properties and prove, for example, that right-expansive cellular automata are chain-mixing. We also show that left-sided pseudo-orbit tracing property together with right-sided expansivity imply that a cellular automaton has the pseudo-orbit tracing property. Another main topic is conjugacy. Two dynamical systems are conjugate if, in a dynamical sense, they are the same system. We show that for one-sided cellular automata conjugacy is undecidable. In fact the result is stronger and shows that the relations of being a factor or a susbsystem are undecidable, too

The mathematical research of William Parry FRS

In this article we survey the mathematical research of the late William (Bill) Parry, FRS

Finite-dimensional Approximations of Discrete Groups

The main objective of this workshop was to bring together experts from various fields, which are all interested in finite and finite-dimensional approximations of infinite algebraic and analytic objects, such as groups, algebras, dynamical systems, group actions, or even von Neumann algebras

Categorical Ontology of Complex Systems, Meta-Systems and Theory of Levels: The Emergence of Life, Human Consciousness and Society

Single cell interactomics in simpler organisms, as well as somatic cell interactomics in multicellular organisms, involve biomolecular interactions in complex signalling pathways that were recently represented in modular terms by quantum automata with ‘reversible behavior’ representing normal cell cycling and division. Other implications of such quantum automata, modular modeling of signaling pathways and cell differentiation during development are in the fields of neural plasticity and brain development leading to quantum-weave dynamic patterns and specific molecular processes underlying extensive memory, learning, anticipation mechanisms and the emergence of human consciousness during the early brain development in children. Cell interactomics is here represented for the first time as a mixture of ‘classical’ states that determine molecular dynamics subject to Boltzmann statistics and ‘steady-state’, metabolic (multi-stable) manifolds, together with ‘configuration’ spaces of metastable quantum states emerging from complex quantum dynamics of interacting networks of biomolecules, such as proteins and nucleic acids that are now collectively defined as quantum interactomics. On the other hand, the time dependent evolution over several generations of cancer cells --that are generally known to undergo frequent and extensive genetic mutations and, indeed, suffer genomic transformations at the chromosome level (such as extensive chromosomal aberrations found in many colon cancers)-- cannot be correctly represented in the ‘standard’ terms of quantum automaton modules, as the normal somatic cells can. This significant difference at the cancer cell genomic level is therefore reflected in major changes in cancer cell interactomics often from one cancer cell ‘cycle’ to the next, and thus it requires substantial changes in the modeling strategies, mathematical tools and experimental designs aimed at understanding cancer mechanisms. Novel solutions to this important problem in carcinogenesis are proposed and experimental validation procedures are suggested. From a medical research and clinical standpoint, this approach has important consequences for addressing and preventing the development of cancer resistance to medical therapy in ongoing clinical trials involving stage III cancer patients, as well as improving the designs of future clinical trials for cancer treatments.\ud \ud \ud KEYWORDS: Emergence of Life and Human Consciousness;\ud Proteomics; Artificial Intelligence; Complex Systems Dynamics; Quantum Automata models and Quantum Interactomics; quantum-weave dynamic patterns underlying human consciousness; specific molecular processes underlying extensive memory, learning, anticipation mechanisms and human consciousness; emergence of human consciousness during the early brain development in children; Cancer cell ‘cycling’; interacting networks of proteins and nucleic acids; genetic mutations and chromosomal aberrations in cancers, such as colon cancer; development of cancer resistance to therapy; ongoing clinical trials involving stage III cancer patients’ possible improvements of the designs for future clinical trials and cancer treatments. \ud \u

Structural and Computational Existence Results for Multidimensional Subshifts

Symbolic dynamics is a branch of mathematics that studies the structure of infinite sequences of symbols, or in the multidimensional case, infinite grids of symbols. Classes of such sequences and grids defined by collections of forbidden patterns are called subshifts, and subshifts of finite type are defined by finitely many forbidden patterns. The simplest examples of multidimensional subshifts are sets of Wang tilings, infinite arrangements of square tiles with colored edges, where adjacent edges must have the same color. Multidimensional symbolic dynamics has strong connections to computability theory, since most of the basic properties of subshifts cannot be recognized by computer programs, but are instead characterized by some higher-level notion of computability. This dissertation focuses on the structure of multidimensional subshifts, and the ways in which it relates to their computational properties. In the first part, we study the subpattern posets and Cantor-Bendixson ranks of countable subshifts of finite type, which can be seen as measures of their structural complexity. We show, by explicitly constructing subshifts with the desired properties, that both notions are essentially restricted only by computability conditions. In the second part of the dissertation, we study different methods of defining (classes of ) multidimensional subshifts, and how they relate to each other and existing methods. We present definitions that use monadic second-order logic, a more restricted kind of logical quantification called quantifier extension, and multi-headed finite state machines. Two of the definitions give rise to hierarchies of subshift classes, which are a priori infinite, but which we show to collapse into finitely many levels. The quantifier extension provides insight to the somewhat mysterious class of multidimensional sofic subshifts, since we prove a characterization for the class of subshifts that can extend a sofic subshift into a nonsofic one.Symbolidynamiikka on matematiikan ala, joka tutkii äärettömän pituisten symbolijonojen ominaisuuksia, tai moniulotteisessa tapauksessa äärettömän laajoja symbolihiloja. Siirtoavaruudet ovat tällaisten jonojen tai hilojen kokoelmia, jotka on määritelty kieltämällä jokin joukko äärellisen kokoisia kuvioita, ja äärellisen tyypin siirtoavaruudet saadaan kieltämällä vain äärellisen monta kuviota. Wangin tiilitykset ovat yksinkertaisin esimerkki moniulotteisista siirtoavaruuksista. Ne ovat värillisistä neliöistä muodostettuja tiilityksiä, joissa kaikkien vierekkäisten sivujen on oltava samanvärisiä. Moniulotteinen symbolidynamiikka on vahvasti yhteydessä laskettavuuden teoriaan, sillä monia siirtoavaruuksien perusominaisuuksia ei ole mahdollista tunnistaa tietokoneohjelmilla, vaan korkeamman tason laskennallisilla malleilla. Väitöskirjassani tutkin moniulotteisten siirtoavaruuksien rakennetta ja sen suhdetta niiden laskennallisiin ominaisuuksiin. Ensimmäisessä osassa keskityn tiettyihin äärellisen tyypin siirtoavaruuksien rakenteellisiin ominaisuuksiin: äärellisten kuvioiden muodostamaan järjestykseen ja Cantor-Bendixsonin astelukuun. Halutunlaisia siirtoavaruuksia rakentamalla osoitan, että molemmat ominaisuudet ovat olennaisesti laskennallisten ehtojen rajoittamia. Väitöskirjan toisessa osassa tutkin erilaisia tapoja määritellä moniulotteisia siirtoavaruuksia, sekä sitä, miten nämä tavat vertautuvat toisiinsa ja tunnettuihin siirtoavaruuksien luokkiin. Käsittelen määritelmiä, jotka perustuvat toisen kertaluvun logiikkaan, kvanttorilaajennukseksi kutsuttuun rajoitettuun loogiseen kvantifiointiin, sekä monipäisiin äärellisiin automaatteihin. Näistä kolmesta määritelmästä kahteen liittyy erilliset siirtoavaruuksien hierarkiat, joiden todistan romahtavan äärellisen korkuisiksi. Kvanttorilaajennuksen tutkimus valottaa myös niin kutsuttujen sofisten siirtoavaruuksien rakennetta, jota ei vielä tunneta hyvin: kyseisessä luvussa selvitän tarkasti, mitkä siirtoavaruudet voivat laajentaa sofisen avaruuden ei-sofiseksi.Siirretty Doriast

Proceedings of AUTOMATA 2011 : 17th International Workshop on Cellular Automata and Discrete Complex Systems

International audienceThe proceedings contain full (reviewed) papers and short (non reviewed) papers that were presented at the workshop

Fault-tolerant quantum computation

The discovery of quantum error correction has greatly improved the long-term prospects for quantum computing technology. Encoded quantum information can be protected from errors that arise due to uncontrolled interactions with the environment, or due to imperfect implementations of quantum logical operations. Recovery from errors can work effectively even if occasional mistakes occur during the recovery procedure. Furthermore, encoded quantum information can be processed without serious propagation of errors. In principle, an arbitrarily long quantum computation can be performed reliably, provided that the average probability of error per gate is less than a certain critical value, the accuracy threshold. It may be possible to incorporate intrinsic fault tolerance into the design of quantum computing hardware, perhaps by invoking topological Aharonov-Bohm interactions to process quantum information.Comment: 58 pages with 7 PostScript figures, LaTeX, uses sprocl.sty and psfig, to appear in "Introduction to Quantum Computation," edited by H.-K. Lo, S. Popescu, and T. P. Spille

Reversible Computation: Extending Horizons of Computing

This open access State-of-the-Art Survey presents the main recent scientific outcomes in the area of reversible computation, focusing on those that have emerged during COST Action IC1405 "Reversible Computation - Extending Horizons of Computing", a European research network that operated from May 2015 to April 2019. Reversible computation is a new paradigm that extends the traditional forwards-only mode of computation with the ability to execute in reverse, so that computation can run backwards as easily and naturally as forwards. It aims to deliver novel computing devices and software, and to enhance existing systems by equipping them with reversibility. There are many potential applications of reversible computation, including languages and software tools for reliable and recovery-oriented distributed systems and revolutionary reversible logic gates and circuits, but they can only be realized and have lasting effect if conceptual and firm theoretical foundations are established first