Using Java for distributed computing in the Gaia satellite data processing

In recent years Java has matured to a stable easy-to-use language with the flexibility of an interpreter (for reflection etc.) but the performance and type checking of a compiled language. When we started using Java for astronomical applications around 1999 they were the first of their kind in astronomy. Now a great deal of astronomy software is written in Java as are many business applications. We discuss the current environment and trends concerning the language and present an actual example of scientific use of Java for high-performance distributed computing: ESA's mission Gaia. The Gaia scanning satellite will perform a galactic census of about 1000 million objects in our galaxy. The Gaia community has chosen to write its processing software in Java. We explore the manifold reasons for choosing Java for this large science collaboration. Gaia processing is numerically complex but highly distributable, some parts being embarrassingly parallel. We describe the Gaia processing architecture and its realisation in Java. We delve into the astrometric solution which is the most advanced and most complex part of the processing. The Gaia simulator is also written in Java and is the most mature code in the system. This has been successfully running since about 2005 on the supercomputer "Marenostrum" in Barcelona. We relate experiences of using Java on a large shared machine. Finally we discuss Java, including some of its problems, for scientific computing.Comment: Experimental Astronomy, August 201

NETTAB 2012 on “Integrated Bio-Search”

The NETTAB 2012 workshop, held in Como on November 14-16, 2012, was devoted to "Integrated Bio-Search", that is to technologies, methods, architectures, systems and applications for searching, retrieving, integrating and analyzing data, information, and knowledge with the aim of answering complex bio-medical-molecular questions, i.e. some of the most challenging issues in bioinformatics today. It brought together about 80 researchers working in the field of Bioinformatics, Computational Biology, Biology, Computer Science and Engineering. More than 50 scientific contributions, including keynote and tutorial talks, oral communications, posters and software demonstrations, were presented at the workshop. This preface provides a brief overview of the workshop and shortly introduces the peer-reviewed manuscripts that were accepted for publication in this Supplement

Code Smells and Refactoring: A Tertiary Systematic Review of Challenges and Observations

In this paper, we present a tertiary systematic literature review of previous surveys, secondary systematic literature reviews, and systematic mappings. We identify the main observations (what we know) and challenges (what we do not know) on code smells and refactoring. We show that code smells and refactoring have a strong relationship with quality attributes, i.e., with understandability, maintainability, testability, complexity, functionality, and reusability. We argue that code smells and refactoring could be considered as the two faces of a same coin. Besides, we identify how refactoring affects quality attributes, more than code smells. We also discuss the implications of this work for practitioners, researchers, and instructors. We identify 13 open issues that could guide future research work. Thus, we want to highlight the gap between code smells and refactoring in the current state of software-engineering research. We wish that this work could help the software-engineering research community in collaborating on future work on code smells and refactoring

The relationship between search based software engineering and predictive modeling

Search Based Software Engineering (SBSE) is an approach to software engineering in which search based optimization algorithms are used to identify optimal or near optimal solutions and to yield insight. SBSE techniques can cater for multiple, possibly competing objectives and/or constraints and applications where the potential solution space is large and complex. This paper will provide a brief overview of SBSE, explaining some of the ways in which it has already been applied to construction of predictive models. There is a mutually beneficial relationship between predictive models and SBSE. The paper sets out eleven open problem areas for Search Based Predictive Modeling and describes how predictive models also have role to play in improving SBSE

The Medium of Visualization for Software Comprehension

Although abundant studies have shown how visualization can help software developers to understand software systems, visualization is still not a common practice since developers (i) have little support to find a proper visualization for their needs, and once they find a suitable visualization tool, they (ii) are unsure of its effectiveness. We aim to offer support for identifying proper visualizations, and to increase the effectiveness of visualization techniques. In this dissertation, we characterize proposed software visualizations. To fill the gap between proposed visualizations and their practical application, we encapsulate such characteristics in an ontology, and propose a meta-visualization approach to find suitable visualizations. Amongst others characteristics of software visualizations, we identify that the medium used to display them can be a means to increase the effectiveness of visualization techniques for particular comprehension tasks.We implement visualization prototypes and validate our thesis via experiments. We found that even though developers using a physical 3D model medium required the least time to deal with tasks that involve identifying outliers, they perceived the least difficulty when visualizing systems based on the standard computer screen medium. Moreover, developers using immersive virtual reality obtained the highest recollection. We conclude that the effectiveness of software visualizations that use the city metaphor to support comprehension tasks can be increased when city visualizations are rendered in an appropriate medium. Furthermore, that visualization of software visualizations can be a suitable means for exploring their multiple characteristics that can be properly encapsulated in an ontology

2023 IMSAloquium

Welcome to IMSAloquium 2023. This is IMSA’s 36 th year of leading in educationalinnovation, and the 35th year of the IMSA Student Inquiry and Research (SIR) Program.https://digitalcommons.imsa.edu/archives_sir/1033/thumbnail.jp