Compression via Matroids: A Randomized Polynomial Kernel for Odd Cycle Transversal

The Odd Cycle Transversal problem (OCT) asks whether a given graph can be made bipartite by deleting at most $k$ of its vertices. In a breakthrough result Reed, Smith, and Vetta (Operations Research Letters, 2004) gave a \BigOh(4^kkmn) time algorithm for it, the first algorithm with polynomial runtime of uniform degree for every fixed $k$. It is known that this implies a polynomial-time compression algorithm that turns OCT instances into equivalent instances of size at most \BigOh(4^k), a so-called kernelization. Since then the existence of a polynomial kernel for OCT, i.e., a kernelization with size bounded polynomially in $k$, has turned into one of the main open questions in the study of kernelization. This work provides the first (randomized) polynomial kernelization for OCT. We introduce a novel kernelization approach based on matroid theory, where we encode all relevant information about a problem instance into a matroid with a representation of size polynomial in $k$. For OCT, the matroid is built to allow us to simulate the computation of the iterative compression step of the algorithm of Reed, Smith, and Vetta, applied (for only one round) to an approximate odd cycle transversal which it is aiming to shrink to size $k$. The process is randomized with one-sided error exponentially small in $k$, where the result can contain false positives but no false negatives, and the size guarantee is cubic in the size of the approximate solution. Combined with an \BigOh(\sqrt{\log n})-approximation (Agarwal et al., STOC 2005), we get a reduction of the instance to size \BigOh(k^{4.5}), implying a randomized polynomial kernelization.Comment: Minor changes to agree with SODA 2012 version of the pape

Algorithmic and Hardness Results for the Colorful Components Problems

In this paper we investigate the colorful components framework, motivated by applications emerging from comparative genomics. The general goal is to remove a collection of edges from an undirected vertex-colored graph $G$ such that in the resulting graph $G'$ all the connected components are colorful (i.e., any two vertices of the same color belong to different connected components). We want $G'$ to optimize an objective function, the selection of this function being specific to each problem in the framework. We analyze three objective functions, and thus, three different problems, which are believed to be relevant for the biological applications: minimizing the number of singleton vertices, maximizing the number of edges in the transitive closure, and minimizing the number of connected components. Our main result is a polynomial time algorithm for the first problem. This result disproves the conjecture of Zheng et al. that the problem is $NP$-hard (assuming $P \neq NP$). Then, we show that the second problem is $APX$-hard, thus proving and strengthening the conjecture of Zheng et al. that the problem is $NP$-hard. Finally, we show that the third problem does not admit polynomial time approximation within a factor of $|V|^{1/14 - \epsilon}$ for any $\epsilon > 0$, assuming $P \neq NP$ (or within a factor of $|V|^{1/2 - \epsilon}$, assuming $ZPP \neq NP$).Comment: 18 pages, 3 figure

On Transformation of a Logical Circuit to a Circuit with NAND and NOR Gates Only

In the paper we consider fast transformation of amultilevel and multioutput circuit with AND, OR and NOT gatesinto a functionally equivalent circuit with NAND and NOR gates.The task can be solved by replacing AND and OR gates byNAND or NOR gates, which in some cases requires introducingthe additional inverters or splitting the gates. In the paper thequick approximation algorithms of the circuit transformation areproposed, minimizing number of the inverters. The presentedalgorithms allow transformation of any multilevel circuit into acircuit being a combination of NOR gates, NAND gates or bothtypes of universal gates

Approximation algorithms for multi-multiway cut and multicut problems on directed graphs

In this paper, we study the directed multicut and directed multimultiway cut problems. The input to the directed multi-multiway cut problem is a weighted directed graph $G=(V,E)$ and $k$ sets $S_1, S_2,\cdots, S_k$ of vertices. The goal is to find a subset of edges of minimum total weight whose removal will disconnect all the connections between the vertices in each set $S_i$, for $1\leq i\leq k$. A special case of this problem is the directed multicut problem whose input consists of a weighted directed graph $G=(V,E)$ and a set of ordered pairs of vertices $(s_1,t_1),\cdots,(s_k,t_k)$. The goal is to find a subset of edges of minimum total weight whose removal will make for any $i, 1\leq i\leq k$, there is no directed path from si to ti . In this paper, we present two approximation algorithms for these problems. The so called region growing paradigm is modified and used for these two cut problems on directed graphs. using this paradigm, we give an approximation algorithm for each problem such that both algorithms have the approximation factor of $O(k)$ the same as the previous works done on these problems. However, the previous works need to solve $k$ linear programming, whereas our algorithms require only one linear programming. Therefore, our algorithms improve the running time of the previous algorithms

Evaluation of ILP-based approaches for partitioning into colorful components

The NP-hard Colorful Components problem is a graph partitioning problem on vertex-colored graphs. We identify a new application of Colorful Components in the correction of Wikipedia interlanguage links, and describe and compare three exact and two heuristic approaches. In particular, we devise two ILP formulations, one based on Hitting Set and one based on Clique Partition. Furthermore, we use the recently proposed implicit hitting set framework [Karp, JCSS 2011; Chandrasekaran et al., SODA 2011] to solve Colorful Components. Finally, we study a move-based and a merge-based heuristic for Colorful Components. We can optimally solve Colorful Components for Wikipedia link correction data; while the Clique Partition-based ILP outperforms the other two exact approaches, the implicit hitting set is a simple and competitive alternative. The merge-based heuristic is very accurate and outperforms the move-based one. The above results for Wikipedia data are confirmed by experiments with synthetic instances

Distributed Matrix Tiling using a Hypergraph Labeling Formulation

Partitioning large matrices is an important problem in distributed linear algebra computing, used in ML among others. Briefly, our goal is to perform a sequence of matrix algebra operations in a distributed manner on these large matrices. However, not all partitioning schemes work well with different matrix algebra operations and their implementations (algorithms). This is a type of data tiling problem. In this paper we consider a data tiling problem using hypergraphs. We prove some hardness results and give a theoretical characterization of its complexity on random instances. Additionally, we develop a greedy algorithm and experimentally show its efficacy

Approximation Algorithms for NP-Hard Problems

The workshop was concerned with the most important recent developments in the area of efficient approximation algorithms for NP-hard optimization problems as well as with new techniques for proving intrinsic lower bounds for efficient approximation

Parameterized Complexity Dichotomy for Steiner Multicut

The Steiner Multicut problem asks, given an undirected graph G, terminals sets T1,...,Tt $\subseteq$ V(G) of size at most p, and an integer k, whether there is a set S of at most k edges or nodes s.t. of each set Ti at least one pair of terminals is in different connected components of G \ S. This problem generalizes several graph cut problems, in particular the Multicut problem (the case p = 2), which is fixed-parameter tractable for the parameter k [Marx and Razgon, Bousquet et al., STOC 2011]. We provide a dichotomy of the parameterized complexity of Steiner Multicut. That is, for any combination of k, t, p, and the treewidth tw(G) as constant, parameter, or unbounded, and for all versions of the problem (edge deletion and node deletion with and without deletable terminals), we prove either that the problem is fixed-parameter tractable or that the problem is hard (W[1]-hard or even (para-)NP-complete). We highlight that: - The edge deletion version of Steiner Multicut is fixed-parameter tractable for the parameter k+t on general graphs (but has no polynomial kernel, even on trees). We present two proofs: one using the randomized contractions technique of Chitnis et al, and one relying on new structural lemmas that decompose the Steiner cut into important separators and minimal s-t cuts. - In contrast, both node deletion versions of Steiner Multicut are W[1]-hard for the parameter k+t on general graphs. - All versions of Steiner Multicut are W[1]-hard for the parameter k, even when p=3 and the graph is a tree plus one node. Hence, the results of Marx and Razgon, and Bousquet et al. do not generalize to Steiner Multicut. Since we allow k, t, p, and tw(G) to be any constants, our characterization includes a dichotomy for Steiner Multicut on trees (for tw(G) = 1), and a polynomial time versus NP-hardness dichotomy (by restricting k,t,p,tw(G) to constant or unbounded).Comment: As submitted to journal. This version also adds a proof of fixed-parameter tractability for parameter k+t using the technique of randomized contraction