Dynamic Data Mining: Methodology and Algorithms

Supervised data stream mining has become an important and challenging data mining task in modern organizations. The key challenges are threefold: (1) a possibly infinite number of streaming examples and time-critical analysis constraints; (2) concept drift; and (3) skewed data distributions. To address these three challenges, this thesis proposes the novel dynamic data mining (DDM) methodology by effectively applying supervised ensemble models to data stream mining. DDM can be loosely defined as categorization-organization-selection of supervised ensemble models. It is inspired by the idea that although the underlying concepts in a data stream are time-varying, their distinctions can be identified. Therefore, the models trained on the distinct concepts can be dynamically selected in order to classify incoming examples of similar concepts. First, following the general paradigm of DDM, we examine the different concept-drifting stream mining scenarios and propose corresponding effective and efficient data mining algorithms. • To address concept drift caused merely by changes of variable distributions, which we term pseudo concept drift, base models built on categorized streaming data are organized and selected in line with their corresponding variable distribution characteristics. • To address concept drift caused by changes of variable and class joint distributions, which we term true concept drift, an effective data categorization scheme is introduced. A group of working models is dynamically organized and selected for reacting to the drifting concept. Secondly, we introduce an integration stream mining framework, enabling the paradigm advocated by DDM to be widely applicable for other stream mining problems. Therefore, we are able to introduce easily six effective algorithms for mining data streams with skewed class distributions. In addition, we also introduce a new ensemble model approach for batch learning, following the same methodology. Both theoretical and empirical studies demonstrate its effectiveness. Future work would be targeted at improving the effectiveness and efficiency of the proposed algorithms. Meantime, we would explore the possibilities of using the integration framework to solve other open stream mining research problems

Bootstrapping Named Entity Annotation by Means of Active Machine Learning: A Method for Creating Corpora

This thesis describes the development and in-depth empirical investigation of a method, called BootMark, for bootstrapping the marking up of named entities in textual documents. The reason for working with documents, as opposed to for instance sentences or phrases, is that the BootMark method is concerned with the creation of corpora. The claim made in the thesis is that BootMark requires a human annotator to manually annotate fewer documents in order to produce a named entity recognizer with a given performance, than would be needed if the documents forming the basis for the recognizer were randomly drawn from the same corpus. The intention is then to use the created named en- tity recognizer as a pre-tagger and thus eventually turn the manual annotation process into one in which the annotator reviews system-suggested annotations rather than creating new ones from scratch. The BootMark method consists of three phases: (1) Manual annotation of a set of documents; (2) Bootstrapping – active machine learning for the purpose of selecting which document to an- notate next; (3) The remaining unannotated documents of the original corpus are marked up using pre-tagging with revision. Five emerging issues are identified, described and empirically investigated in the thesis. Their common denominator is that they all depend on the real- ization of the named entity recognition task, and as such, require the context of a practical setting in order to be properly addressed. The emerging issues are related to: (1) the characteristics of the named entity recognition task and the base learners used in conjunction with it; (2) the constitution of the set of documents annotated by the human annotator in phase one in order to start the bootstrapping process; (3) the active selection of the documents to annotate in phase two; (4) the monitoring and termination of the active learning carried out in phase two, including a new intrinsic stopping criterion for committee-based active learning; and (5) the applicability of the named entity recognizer created during phase two as a pre-tagger in phase three. The outcomes of the empirical investigations concerning the emerging is- sues support the claim made in the thesis. The results also suggest that while the recognizer produced in phases one and two is as useful for pre-tagging as a recognizer created from randomly selected documents, the applicability of the recognizer as a pre-tagger is best investigated by conducting a user study involving real annotators working on a real named entity recognition task

A Study of Boosting based Transfer Learning for Activity and Gesture Recognition

abstract: Real-world environments are characterized by non-stationary and continuously evolving data. Learning a classification model on this data would require a framework that is able to adapt itself to newer circumstances. Under such circumstances, transfer learning has come to be a dependable methodology for improving classification performance with reduced training costs and without the need for explicit relearning from scratch. In this thesis, a novel instance transfer technique that adapts a "Cost-sensitive" variation of AdaBoost is presented. The method capitalizes on the theoretical and functional properties of AdaBoost to selectively reuse outdated training instances obtained from a "source" domain to effectively classify unseen instances occurring in a different, but related "target" domain. The algorithm is evaluated on real-world classification problems namely accelerometer based 3D gesture recognition, smart home activity recognition and text categorization. The performance on these datasets is analyzed and evaluated against popular boosting-based instance transfer techniques. In addition, supporting empirical studies, that investigate some of the less explored bottlenecks of boosting based instance transfer methods, are presented, to understand the suitability and effectiveness of this form of knowledge transfer.Dissertation/ThesisM.S. Computer Science 201

Transforming Graph Representations for Statistical Relational Learning

Relational data representations have become an increasingly important topic due to the recent proliferation of network datasets (e.g., social, biological, information networks) and a corresponding increase in the application of statistical relational learning (SRL) algorithms to these domains. In this article, we examine a range of representation issues for graph-based relational data. Since the choice of relational data representation for the nodes, links, and features can dramatically affect the capabilities of SRL algorithms, we survey approaches and opportunities for relational representation transformation designed to improve the performance of these algorithms. This leads us to introduce an intuitive taxonomy for data representation transformations in relational domains that incorporates link transformation and node transformation as symmetric representation tasks. In particular, the transformation tasks for both nodes and links include (i) predicting their existence, (ii) predicting their label or type, (iii) estimating their weight or importance, and (iv) systematically constructing their relevant features. We motivate our taxonomy through detailed examples and use it to survey and compare competing approaches for each of these tasks. We also discuss general conditions for transforming links, nodes, and features. Finally, we highlight challenges that remain to be addressed

Dynamic feature selection for clustering high dimensional data streams

open access articleChange in a data stream can occur at the concept level and at the feature level. Change at the feature level can occur if new, additional features appear in the stream or if the importance and relevance of a feature changes as the stream progresses. This type of change has not received as much attention as concept-level change. Furthermore, a lot of the methods proposed for clustering streams (density-based, graph-based, and grid-based) rely on some form of distance as a similarity metric and this is problematic in high-dimensional data where the curse of dimensionality renders distance measurements and any concept of “density” difficult. To address these two challenges we propose combining them and framing the problem as a feature selection problem, specifically a dynamic feature selection problem. We propose a dynamic feature mask for clustering high dimensional data streams. Redundant features are masked and clustering is performed along unmasked, relevant features. If a feature's perceived importance changes, the mask is updated accordingly; previously unimportant features are unmasked and features which lose relevance become masked. The proposed method is algorithm-independent and can be used with any of the existing density-based clustering algorithms which typically do not have a mechanism for dealing with feature drift and struggle with high-dimensional data. We evaluate the proposed method on four density-based clustering algorithms across four high-dimensional streams; two text streams and two image streams. In each case, the proposed dynamic feature mask improves clustering performance and reduces the processing time required by the underlying algorithm. Furthermore, change at the feature level can be observed and tracked

A probabilistic classifier ensemble weighting scheme based on cross-validated accuracy estimates

Our hypothesis is that building ensembles of small sets of strong classifiers constructed with different learning algorithms is, on average, the best approach to classification for real world problems. We propose a simple mechanism for building small heterogeneous ensembles based on exponentially weighting the probability estimates of the base classifiers with an estimate of the accuracy formed through cross-validation on the train data. We demonstrate through extensive experimentation that, given the same small set of base classifiers, this method has measurable benefits over commonly used alternative weighting, selection or meta classifier approaches to heterogeneous ensembles. We also show how an ensemble of five well known, fast classifiers can produce an ensemble that is not significantly worse than large homogeneous ensembles and tuned individual classifiers on datasets from the UCI archive. We provide evidence that the performance of the Cross-validation Accuracy Weighted Probabilistic Ensemble (CAWPE) generalises to a completely separate set of datasets, the UCR time series classification archive, and we also demonstrate that our ensemble technique can significantly improve the state-of-the-art classifier for this problem domain. We investigate the performance in more detail, and find that the improvement is most marked in problems with smaller train sets. We perform a sensitivity analysis and an ablation study to demonstrate the robustness of the ensemble and the significant contribution of each design element of the classifier. We conclude that it is, on average, better to ensemble strong classifiers with a weighting scheme rather than perform extensive tuning and that CAWPE is a sensible starting point for combining classifiers

Identification and Classification of Radio Pulsar Signals Using Machine Learning

Automated single-pulse search approaches are necessary as ever-increasing amount of observed data makes the manual inspection impractical. Detecting radio pulsars using single-pulse searches, however, is a challenging problem for machine learning because pul- sar signals often vary significantly in brightness, width, and shape and are only detected in a small fraction of observed data. The research work presented in this dissertation is focused on development of ma- chine learning algorithms and approaches for single-pulse searches in the time domain. Specifically, (1) We developed a two-stage single-pulse search approach, named Single- Pulse Event Group IDentification (SPEGID), which automatically identifies and clas- sifies pulsars in radio pulsar search data. SPEGID first identifies pulse candidates as trial single-pulse event groups and then extracts features from the candidates and trains classifiers using supervised machine learning. SPEGID also addressed the challenges in- troduced by the current data processing techniques and successfully identified bright and dim candidates as well as other types of challenging pulsar candidates. (2) To address the lack of training data in the early stages of pulsar surveys, we explored the cross-surveys prediction. Our results showed that using instance-based and parameter-based transfer learning methods improved the performance of pulsar classification across surveys. (3) We developed a hybrid recommender system aimed to detect rare pulsar signals that are often missed by supervised learning. The proposed recommender system uses a target rare case to state users’ requirements and ranks the candidates using a similarity func- tion which is calculated as a weighted sum of individual feature similarities. Our hybrid recommender system successfully detects both low signal-to-noise ratio (S/N) pulsars and Fast Radio Bursts (FRBs). The approaches proposed in this dissertation were used to analyze data from the Green Bank Telescope 350 MHz drift (GBTDrift) pulsar survey and the Arecibo 327 MHz (AO327) drift pulsar survey and discovered eight pulsars that were overlooked in previous analysis done with existing methods