Using open access literature to guide full-text query formulation

*Background*
Much scientific knowledge is contained in the details of the full-text biomedical literature. Most research in automated retrieval presupposes that the target literature can be downloaded and preprocessed prior to query. Unfortunately, this is not a practical or maintainable option for most users due to licensing restrictions, website terms of use, and sheer volume. Scientific article full-text is increasingly queriable through portals such as PubMed Central, Highwire Press, Scirus, and Google Scholar. However, because these portals only support very basic Boolean queries and full text is so expressive, formulating an effective query is a difficult task for users. We propose improving the formulation of full-text queries by using the open access literature as a proxy for the literature to be searched. We evaluated the feasibility of this approach by building a high-precision query for identifying studies that perform gene expression microarray experiments.

*Methodology and Results*
We built decision rules from unigram and bigram features of the open access literature. Minor syntax modifications were needed to translate the decision rules into the query languages of PubMed Central, Highwire Press, and Google Scholar. We mapped all retrieval results to PubMed identifiers and considered our query results as the union of retrieved articles across all portals. Compared to our reference standard, the derived full-text query found 56% (95% confidence interval, 52% to 61%) of intended studies, and 90% (86% to 93%) of studies identified by the full-text search met the reference standard criteria. Due to this relatively high precision, the derived query was better suited to the intended application than alternative baseline MeSH queries.

*Significance*
Using open access literature to develop queries for full-text portals is an open, flexible, and effective method for retrieval of biomedical literature articles based on article full-text. We hope our approach will raise awareness of the constraints and opportunities in mainstream full-text information retrieval and provide a useful tool for today’s researchers.
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Using open access literature to guide full-text query formulation

*Background* 
Much scientific knowledge is contained in the details of the full-text biomedical literature. Most research in automated retrieval presupposes that the target literature can be downloaded and preprocessed prior to query. Unfortunately, this is not a practical or maintainable option for most users due to licensing restrictions, website terms of use, and sheer volume. Scientific article full-text is increasingly queriable through portals such as PubMed Central, Highwire Press, Scirus, and Google Scholar. However, because these portals only support very basic Boolean queries and full text is so expressive, formulating an effective query is a difficult task for users. We propose improving the formulation of full-text queries by using the open access literature as a proxy for the literature to be searched. We evaluated the feasibility of this approach by building a high-precision query for identifying studies that perform gene expression microarray experiments.
 
*Methodology and Results* 
We built decision rules from unigram and bigram features of the open access literature. Minor syntax modifications were needed to translate the decision rules into the query languages of PubMed Central, Highwire Press, and Google Scholar. We mapped all retrieval results to PubMed identifiers and considered our query results as the union of retrieved articles across all portals. Compared to our reference standard, the derived full-text query found 56% (95% confidence interval, 52% to 61%) of intended studies, and 90% (86% to 93%) of studies identified by the full-text search met the reference standard criteria. Due to this relatively high precision, the derived query was better suited to the intended application than alternative baseline MeSH queries.
 
*Significance* 
Using open access literature to develop queries for full-text portals is an open, flexible, and effective method for retrieval of biomedical literature articles based on article full-text. We hope our approach will raise awareness of the constraints and opportunities in mainstream full-text information retrieval and provide a useful tool for today’s researchers.
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Modellgetriebene Entwicklung inhaltsbasierter Bildretrieval-Systeme auf der Basis von objektrelationalen Datenbank-Management-Systeme

In this thesis, the model-driven software development paradigm is employed in order to support the development of Content-based Image Retrieval Systems (CBIRS) for different application domains. Modeling techniques, based on an adaptable conceptual framework model, are proposed for deriving the components of a concrete CBIRS. Transformation techniques are defined to automatically implement the derived application specific models in an object-relational database management system. A set of criteria assuring the quality of the transformation are derived from the theory for preserving information capacity applied in database design.In dieser Dissertation wird das Paradigma des modellgetriebenen Softwareentwurfs für die Erstellung von inhaltsbasierten Bildretrieval-Systemen verwendet. Ein adaptierbares Frameworkmodell wird für die Ableitung des Modells eines konkreten Bildretrieval-Systems eingesetzt. Transformationstechniken für die automatische Generierung von Implementierungen in Objektorientierten Datenbank-Management-Systemen aus dem konzeptuellen Modell werden erarbeitet. Die aus der Theorie des Datenbankentwurfs bekannten Anforderungen zur Kapazitätserhaltung der Transformation werden verwendet, um Kriterien für die erforderliche Qualität der Transformation zu definieren

Remote sensing information sciences research group

Research conducted under this grant was used to extend and expand existing remote sensing activities at the University of California, Santa Barbara in the areas of georeferenced information systems, matching assisted information extraction from image data and large spatial data bases, artificial intelligence, and vegetation analysis and modeling. The research thrusts during the past year are summarized. The projects are discussed in some detail

Why the EU is failing in its neighbourhood: the case of Armenia

As the Arab Spring has made clear, the EU’s strategic aim of being surrounded by a ring of secure, democratic, and prosperous friends has not yet materialized. While most previous analyses have found fault with inconsistent application of conditionality, this article locates the root of the problem with an the EU’s institutional set-up. Starting from interviews and documentary analysis, it uses Armenia as a case study to demonstrate how competition within and between the European Parliament, the Council, and the Commission has led to internal, horizontal, and vertical inconsistencies that have seriously hampered the EU’s capacity to promote reforms. If recent institutional reforms have been designed to address precisely these problems, sociological rational choice and historical institutionalism suggest that it remains to be seen to what extent these recent reforms and initiatives will be able to bring about a change substantial enough to make the EU more successful in its neighbourhood

Evaluating teachers’ professional development initiatives : towards an extended evaluative framework

Evaluating teachers’ professional development initiatives (PDI) is one of the main challenges for the teacher professionalisation eld. Although di erent studies have focused on the e ectiveness of PDI, the obtained e ects and evaluative methods have been found to be widely divergent. By means of a narrative review, this study provides an extended framework to guide the evaluation of (the e ectiveness of ) PDI. Furthermore, and in accordance with this framework, an overview of measurement instruments that are currently in use is provided. The study concludes with implications for educational research and developers of PDI