Biological image analysis

In biological research images are extensively used to monitor growth, dynamics and changes in biological specimen, such as cells or plants. Many of these images are used solely for observation or are manually annotated by an expert. In this dissertation we discuss several methods to automate the annotating and analysis of bio-images. Two large clusters of methods have been investigated and developed. A first set of methods focuses on the automatic delineation of relevant objects in bio-images, such as individual cells in microscopic images. Since these methods should be useful for many different applications, e.g. to detect and delineate different objects (cells, plants, leafs, ...) in different types of images (different types of microscopes, regular colour photographs, ...), the methods should be easy to adjust. Therefore we developed a methodology relying on probability theory, where all required parameters can easily be estimated by a biologist, without requiring any knowledge on the techniques used in the actual software. A second cluster of investigated techniques focuses on the analysis of shapes. By defining new features that describe shapes, we are able to automatically classify shapes, retrieve similar shapes from a database and even analyse how an object deforms through time

Prioritizing Content of Interest in Multimedia Data Compression

Image and video compression techniques make data transmission and storage in digital multimedia systems more efficient and feasible for the system's limited storage and bandwidth. Many generic image and video compression techniques such as JPEG and H.264/AVC have been standardized and are now widely adopted. Despite their great success, we observe that these standard compression techniques are not the best solution for data compression in special types of multimedia systems such as microscopy videos and low-power wireless broadcast systems. In these application-specific systems where the content of interest in the multimedia data is known and well-defined, we should re-think the design of a data compression pipeline. We hypothesize that by identifying and prioritizing multimedia data's content of interest, new compression methods can be invented that are far more effective than standard techniques. In this dissertation, a set of new data compression methods based on the idea of prioritizing the content of interest has been proposed for three different kinds of multimedia systems. I will show that the key to designing efficient compression techniques in these three cases is to prioritize the content of interest in the data. The definition of the content of interest of multimedia data depends on the application. First, I show that for microscopy videos, the content of interest is defined as the spatial regions in the video frame with pixels that don't only contain noise. Keeping data in those regions with high quality and throwing out other information yields to a novel microscopy video compression technique. Second, I show that for a Bluetooth low energy beacon based system, practical multimedia data storage and transmission is possible by prioritizing content of interest. I designed custom image compression techniques that preserve edges in a binary image, or foreground regions of a color image of indoor or outdoor objects. Last, I present a new indoor Bluetooth low energy beacon based augmented reality system that integrates a 3D moving object compression method that prioritizes the content of interest.Doctor of Philosoph

Effective and efficient kernel-based image representations for classification and retrieval

Image representation is a challenging task. In particular, in order to obtain better performances in different image processing applications such as video surveillance, autonomous driving, crime scene detection and automatic inspection, effective and efficient image representation is a fundamental need. The performance of these applications usually depends on how accurately images are classified into their corresponding groups or how precisely relevant images are retrieved from a database based on a query. Accuracy in image classification and precision in image retrieval depend on the effectiveness of image representation. Existing image representation methods have some limitations. For example, spatial pyramid matching, which is a popular method incorporating spatial information in image-level representation, has not been fully studied to date. In addition, the strengths of pyramid match kernel and spatial pyramid matching are not combined for better image matching. Kernel descriptors based on gradient, colour and shape overcome the limitations of histogram-based descriptors, but suffer from information loss, noise effects and high computational complexity. Furthermore, the combined performance of kernel descriptors has limitations related to computational complexity, higher dimensionality and lower effectiveness. Moreover, the potential of a global texture descriptor which is based on human visual perception has not been fully explored to date. Therefore, in this research project, kernel-based effective and efficient image representation methods are proposed to address the above limitations. An enhancement is made to spatial pyramid matching in terms of improved rotation invariance. This is done by investigating different partitioning schemes suitable to achieve rotation-invariant image representation and the proposal of a weight function for appropriate level contribution in image matching. In addition, the strengths of pyramid match kernel and spatial pyramid are combined to enhance matching accuracy between images. The existing kernel descriptors are modified and improved to achieve greater effectiveness, minimum noise effects, less dimensionality and lower computational complexity. A novel fusion approach is also proposed to combine the information related to all pixel attributes, before the descriptor extraction stage. Existing kernel descriptors are based only on gradient, colour and shape information. In this research project, a texture-based kernel descriptor is proposed by modifying an existing popular global texture descriptor. Finally, all the contributions are evaluated in an integrated system. The performances of the proposed methods are qualitatively and quantitatively evaluated on two to four different publicly available image databases. The experimental results show that the proposed methods are more effective and efficient in image representation than existing benchmark methods.Doctor of Philosoph

Use Case Oriented Medical Visual Information Retrieval & System Evaluation

Large amounts of medical visual data are produced daily in hospitals, while new imaging techniques continue to emerge. In addition, many images are made available continuously via publications in the scientific literature and can also be valuable for clinical routine, research and education. Information retrieval systems are useful tools to provide access to the biomedical literature and fulfil the information needs of medical professionals. The tools developed in this thesis can potentially help clinicians make decisions about difficult diagnoses via a case-based retrieval system based on a use case associated with a specific evaluation task. This system retrieves articles from the biomedical literature when querying with a case description and attached images. This thesis proposes a multimodal approach for medical case-based retrieval with focus on the integration of visual information connected to text. Furthermore, the ImageCLEFmed evaluation campaign was organised during this thesis promoting medical retrieval system evaluation

Video based detection of normal and anomalous behaviour of individuals

This PhD research has proposed novel computer vision and machine learning algorithms for the problem of video based anomalous event detection of individuals. Varieties of Hidden Markov Models were designed to model the temporal and spatial causalities of crowd behaviour. A Markov Random Field on top of a Gaussian Mixture Model is proposed to incorporate spatial context information during classification. Discriminative conditional random field methods are also proposed. Novel features are proposed to extract motion and appearance information. Most of the proposed approaches comprehensively outperform other techniques on publicly available datasets during the time of publications originating from the results

Intelligent Circuits and Systems

ICICS-2020 is the third conference initiated by the School of Electronics and Electrical Engineering at Lovely Professional University that explored recent innovations of researchers working for the development of smart and green technologies in the fields of Energy, Electronics, Communications, Computers, and Control. ICICS provides innovators to identify new opportunities for the social and economic benefits of society.　 This conference bridges the gap between academics and R&D institutions, social visionaries, and experts from all strata of society to present their ongoing research activities and foster research relations between them. It provides opportunities for the exchange of new ideas, applications, and experiences in the field of smart technologies and finding global partners for future collaboration. The ICICS-2020 was conducted in two broad categories, Intelligent Circuits & Intelligent Systems and Emerging Technologies in Electrical Engineering

Video object extraction in distributed surveillance systems

Recently, automated video surveillance and related video processing algorithms have received considerable attention from the research community. Challenges in video surveillance rise from noise, illumination changes, camera motion, splits and occlusions, complex human behavior, and how to manage extracted surveillance information for delivery, archiving, and retrieval: Many video surveillance systems focus on video object extraction, while few focus on both the system architecture and video object extraction. We focus on both and integrate them to produce an end-to-end system and study the challenges associated with building this system. We propose a scalable, distributed, and real-time video-surveillance system with a novel architecture, indexing, and retrieval. The system consists of three modules: video workstations for processing, control workstations for monitoring, and a server for management and archiving. The proposed system models object features as temporal Gaussians and produces: an 18 frames/second frame-rate for SIF video and static cameras, reduced network and storage usage, and precise retrieval results. It is more scalable and delivers more balanced distributed performance than recent architectures. The first stage of video processing is noise estimation. We propose a method for localizing homogeneity and estimating the additive white Gaussian noise variance, which uses spatially scattered initial seeds and utilizes particle filtering techniques to guide their spatial movement towards homogeneous locations from which the estimation is performed. The noise estimation method reduces the number of measurements required by block-based methods while achieving more accuracy. Next, we segment video objects using a background subtraction technique. We generate the background model online for static cameras using a mixture of Gaussians background maintenance approach. For moving cameras, we use a global motion estimation method offline to bring neighboring frames into the coordinate system of the current frame and we merge them to produce the background model. We track detected objects using a feature-based object tracking method with improved detection and correction of occlusion and split. We detect occlusion and split through the identification of sudden variations in the spatia-temporal features of objects. To detect splits, we analyze the temporal behavior of split objects to discriminate between errors in segmentation and real separation of objects. Both objective and subjective experimental results show the ability of the proposed algorithm to detect and correct both splits and occlusions of objects. For the last stage of video processing, we propose a novel method for the detection of vandalism events which is based on a proposed definition for vandal behaviors recorded on surveillance video sequences. We monitor changes inside a restricted site containing vandalism-prone objects and declare vandalism when an object is detected as leaving the site while there is temporally consistent and significant static changes representing damage, given that the site is normally unchanged after use. The proposed method is tested on sequences showing real and simulated vandal behaviors and it achieves a detection rate of 96%. It detects different forms of vandalism such as graffiti and theft. The proposed end-ta-end video surveillance system aims at realizing the potential of video object extraction in automated surveillance and retrieval by focusing on both video object extraction and the management, delivery, and utilization of the extracted informatio