Volumetric segmentation of multiple basal ganglia structures

We present a new active contour-based, statistical method for simultaneous volumetric segmentation of multiple subcortical structures in the brain. Neighboring anatomical structures in the human brain exhibit co-dependencies which can aid in segmentation, if properly analyzed and modeled. Motivated by this observation, we formulate the segmentation problem as a maximum a posteriori estimation problem, in which we incorporate statistical prior models on the shapes and inter-shape (relative) poses of the structures of interest. This provides a principled mechanism to bring high level information about the shapes and the relationships of anatomical structures into the segmentation problem. For learning the prior densities based on training data, we use a nonparametric multivariate kernel density estimation framework. We combine these priors with data in a variational framework, and develop an active contour-based iterative segmentation algorithm. We test our method on the problem of volumetric segmentation of basal ganglia structures in magnetic resonance (MR) images. We compare our technique with existing methods and demonstrate the improvements it provides in terms of segmentation accuracy

DeepCut: Object Segmentation from Bounding Box Annotations using Convolutional Neural Networks

In this paper, we propose DeepCut, a method to obtain pixelwise object segmentations given an image dataset labelled with bounding box annotations. It extends the approach of the well-known GrabCut method to include machine learning by training a neural network classifier from bounding box annotations. We formulate the problem as an energy minimisation problem over a densely-connected conditional random field and iteratively update the training targets to obtain pixelwise object segmentations. Additionally, we propose variants of the DeepCut method and compare those to a naive approach to CNN training under weak supervision. We test its applicability to solve brain and lung segmentation problems on a challenging fetal magnetic resonance dataset and obtain encouraging results in terms of accuracy

Ball-Scale Based Hierarchical Multi-Object Recognition in 3D Medical Images

This paper investigates, using prior shape models and the concept of ball scale (b-scale), ways of automatically recognizing objects in 3D images without performing elaborate searches or optimization. That is, the goal is to place the model in a single shot close to the right pose (position, orientation, and scale) in a given image so that the model boundaries fall in the close vicinity of object boundaries in the image. This is achieved via the following set of key ideas: (a) A semi-automatic way of constructing a multi-object shape model assembly. (b) A novel strategy of encoding, via b-scale, the pose relationship between objects in the training images and their intensity patterns captured in b-scale images. (c) A hierarchical mechanism of positioning the model, in a one-shot way, in a given image from a knowledge of the learnt pose relationship and the b-scale image of the given image to be segmented. The evaluation results on a set of 20 routine clinical abdominal female and male CT data sets indicate the following: (1) Incorporating a large number of objects improves the recognition accuracy dramatically. (2) The recognition algorithm can be thought as a hierarchical framework such that quick replacement of the model assembly is defined as coarse recognition and delineation itself is known as finest recognition. (3) Scale yields useful information about the relationship between the model assembly and any given image such that the recognition results in a placement of the model close to the actual pose without doing any elaborate searches or optimization. (4) Effective object recognition can make delineation most accurate.Comment: This paper was published and presented in SPIE Medical Imaging 201

Coupled non-parametric shape and moment-based inter-shape pose priors for multiple basal ganglia structure segmentation

This paper presents a new active contour-based, statistical method for simultaneous volumetric segmentation of multiple subcortical structures in the brain. In biological tissues, such as the human brain, neighboring structures exhibit co-dependencies which can aid in segmentation, if properly analyzed and modeled. Motivated by this observation, we formulate the segmentation problem as a maximum a posteriori estimation problem, in which we incorporate statistical prior models on the shapes and inter-shape (relative) poses of the structures of interest. This provides a principled mechanism to bring high level information about the shapes and the relationships of anatomical structures into the segmentation problem. For learning the prior densities we use a nonparametric multivariate kernel density estimation framework. We combine these priors with data in a variational framework and develop an active contour-based iterative segmentation algorithm. We test our method on the problem of volumetric segmentation of basal ganglia structures in magnetic resonance (MR) images. We present a set of 2D and 3D experiments as well as a quantitative performance analysis. In addition, we perform a comparison to several existent segmentation methods and demonstrate the improvements provided by our approach in terms of segmentation accuracy

Competitive Collaboration: Joint Unsupervised Learning of Depth, Camera Motion, Optical Flow and Motion Segmentation

We address the unsupervised learning of several interconnected problems in low-level vision: single view depth prediction, camera motion estimation, optical flow, and segmentation of a video into the static scene and moving regions. Our key insight is that these four fundamental vision problems are coupled through geometric constraints. Consequently, learning to solve them together simplifies the problem because the solutions can reinforce each other. We go beyond previous work by exploiting geometry more explicitly and segmenting the scene into static and moving regions. To that end, we introduce Competitive Collaboration, a framework that facilitates the coordinated training of multiple specialized neural networks to solve complex problems. Competitive Collaboration works much like expectation-maximization, but with neural networks that act as both competitors to explain pixels that correspond to static or moving regions, and as collaborators through a moderator that assigns pixels to be either static or independently moving. Our novel method integrates all these problems in a common framework and simultaneously reasons about the segmentation of the scene into moving objects and the static background, the camera motion, depth of the static scene structure, and the optical flow of moving objects. Our model is trained without any supervision and achieves state-of-the-art performance among joint unsupervised methods on all sub-problems.Comment: CVPR 201

A Variational Framework for the Simultaneous Segmentation and Object Behavior Classification of Image Sequences

In this paper, we advance the state of the art in variational image segmentation through the fusion of bottom-up segmentation and top-down classification of object behavior over an image sequence. Such an approach is beneficial for both tasks and is carried out through a joint optimization, which enables the two tasks to cooperate, such that knowledge relevant to each can aid in the resolution of the other, thereby enhancing the final result. In particular, classification offers dynamic probabilistic priors to guide segmentation, while segmentation supplies its results to classification, ensuring that they are consistent with prior knowledge. The prior models are learned from training data and updated dynamically, based on segmentations of earlier images in the sequence. We demonstrate the potential of our approach in a hand gesture recognition application, where the combined use of segmentation and classification improves robustness in the presence of occlusion and background complexity

Cooperative Object Segmentation and Behavior Inference inImage Sequences

In this paper, we propose a general framework for fusing bottom-up segmentation with top-down object behavior inference over an image sequence. This approach is beneficial for both tasks, since it enables them to cooperate so that knowledge relevant to each can aid in the resolution of the other, thus enhancing the final result. In particular, the behavior inference process offers dynamic probabilistic priors to guide segmentation. At the same time, segmentation supplies its results to the inference process, ensuring that they are consistent both with prior knowledge and with new image information. The prior models are learned from training data and they adapt dynamically, based on newly analyzed images. We demonstrate the effectiveness of our framework via particular implementations that we have employed in the resolution of two hand gesture recognition applications. Our experimental results illustrate the robustness of our joint approach to segmentation and behavior inference in challenging conditions involving complex backgrounds and occlusions of the target objec

Point Cloud Processing Algorithms for Environment Understanding in Intelligent Vehicle Applications

Understanding the surrounding environment including both still and moving objects is crucial to the design and optimization of intelligent vehicles. In particular, acquiring the knowledge about the vehicle environment could facilitate reliable detection of moving objects for the purpose of avoiding collisions. In this thesis, we focus on developing point cloud processing algorithms to support intelligent vehicle applications. The contributions of this thesis are three-fold.;First, inspired by the analogy between point cloud and video data, we propose to formulate a problem of reconstructing the vehicle environment (e.g., terrains and buildings) from a sequence of point cloud sets. Built upon existing point cloud registration tool such as iterated closest point (ICP), we have developed an expectation-maximization (EM)-like technique that can automatically mosaic multiple point cloud sets into a larger one characterizing the still environment surrounding the vehicle.;Second, we propose to utilize the color information (from color images captured by the RGB camera) as a supplementary source to the three-dimensional point cloud data. Such joint color and depth representation has the potential of better characterizing the surrounding environment of a vehicle. Based on the novel joint RGBD representation, we propose training a convolution neural network on color images and depth maps generated from the point cloud data.;Finally, we explore a sensor fusion method that combines the results given by a Lidar based detection algorithm and vehicle to everything (V2X) communicated data. Since Lidar and V2X respectively characterize the environmental information from complementary sources, we propose to get a better localization of the surrounding vehicles by a linear sensor fusion method. The effectiveness of the proposed sensor fusion method is verified by comparing detection error profiles