Applications of Biological Cell Models in Robotics

In this paper I present some of the most representative biological models applied to robotics. In particular, this work represents a survey of some models inspired, or making use of concepts, by gene regulatory networks (GRNs): these networks describe the complex interactions that affect gene expression and, consequently, cell behaviour

Morphogenesis in robot swarms

Morphogenesis allows millions of cells to self-organize into intricate structures with a wide variety of functional shapes during embryonic development. This process emerges from local interactions of cells under the control of gene circuits that are identical in every cell, robust to intrinsic noise, and adaptable to changing environments. Constructing human technology with these properties presents an important opportunity in swarm robotic applications ranging from construction to exploration. Morphogenesis in nature may use two different approaches: hierarchical, top-down control or spontaneously self-organizing dynamics such as reaction-diffusion Turing patterns. Here, we provide a demonstration of purely self-organizing behaviors to create emergent morphologies in large swarms of real robots. The robots achieve this collective organization without any self-localization and instead rely entirely on local interactions with neighbors. Results show swarms of 300 robots that self-construct organic and adaptable shapes that are robust to damage. This is a step toward the emergence of functional shape formation in robot swarms following principles of self-organized morphogenetic engineering

A Distributed Epigenetic Shape Formation and Regeneration Algorithm for a Swarm of Robots

Living cells exhibit both growth and regeneration of body tissues. Epigenetic Tracking (ET), models this growth and regenerative qualities of living cells and has been used to generate complex 2D and 3D shapes. In this paper, we present an ET based algorithm that aids a swarm of identically-programmed robots to form arbitrary shapes and regenerate them when cut. The algorithm works in a distributed manner using only local interactions and computations without any central control and aids the robots to form the shape in a triangular lattice structure. In case of damage or splitting of the shape, it helps each set of the remaining robots to regenerate and position themselves to build scaled down versions of the original shape. The paper presents the shapes formed and regenerated by the algorithm using the Kilombo simulator.Comment: 8 pages, 9 figures, GECCO-18 conferenc

Chemotaxis-based spatial self-organization algorithms

Self-organization is a process that increases the order of a system as a result of local interactions among low-level, simple components, without the guidance of an outside source. Spatial self-organization is a process in which shapes and structures emerge at a global level from collective movements of low level shape primitives. Spatial self-organization is a stochastic process, and the outcome of the aggregation cannot necessarily be guaranteed. Despite the inherent ambiguity, self-organizing complex systems arise everywhere in nature. Motivated by the ability of living cells to form specific shapes and structures, we develop two self-organizing systems towards the ultimate goal of directing the spatial self-organizing process. We first develop a self-sorting system composed of a mixture of cells. The system consistently produces a sorted structure. We then extend the sorting system to a general shape formation system. To do so, we introduce morphogenetic primitives (MP), defined as software agents, which enable self-organizing shape formation of user-defined structures through a chemotaxis paradigm. One challenge that arises from the shape formation process is that the process may form two or more stable final configurations. In order to direct the self-organizing process, we find a way to characterize the macroscopic configuration of the MP swarm. We demonstrate that statistical moments of the primitives' locations can successfully capture the macroscopic structure of the aggregated shape. We do so by predicting the final configurations produced by our spatial self-organization system at an early stage in the process using features based on the statistical moments. At the next stage, we focus on developing a technique to control the outcome of bifurcating aggregations. We identify thresholds of the moments and generate biased initial conditions whose statistical moments meet the thresholds. By starting simulations with biased, random initial configurations, we successfully control the aggregation for a number of swarms produced by the agent-based shape formation system. This thesis demonstrates that chemotaxis can be used as a paradigm to create an agent- based spatial self-organization system. Furthermore, statistical moments of the swarm can be used to robustly predict and control the outcomes of the aggregation process.Ph.D., Computer Science -- Drexel University, 201

Embryomorphic Engineering: Emergent innovation through evolutionary development

Embryomorphic Engineering, a particular instance of Morpho-genetic Engineering, takes its inspiration directly from biological development to create new hardware, software or network architectures by decentralized self-assembly of elementary agents. At its core, it combines three key principles of multicellular embryogenesis: chemical gradient di usion (providing positional information to the agents), gene regulatory networks (triggering their diferentiation into types, thus patterning), and cell division (creating structural constraints, thus reshaping). This chapter illustrates the potential of Embryomorphic Engineering in di erent spaces: 2D/3D physical swarms, which can nd applications in collective robotics, synthetic biology or nan- otechnology; and nD graph topologies, which can nd applications in dis- tributed software and peer-to-peer techno-social networks. In all cases, the speci c genotype shared by all the agents makes the phenotype's complex architecture and function modular, programmable and reproducible