Skills and Knowledge for Data-Intensive Environmental Research.

The scale and magnitude of complex and pressing environmental issues lend urgency to the need for integrative and reproducible analysis and synthesis, facilitated by data-intensive research approaches. However, the recent pace of technological change has been such that appropriate skills to accomplish data-intensive research are lacking among environmental scientists, who more than ever need greater access to training and mentorship in computational skills. Here, we provide a roadmap for raising data competencies of current and next-generation environmental researchers by describing the concepts and skills needed for effectively engaging with the heterogeneous, distributed, and rapidly growing volumes of available data. We articulate five key skills: (1) data management and processing, (2) analysis, (3) software skills for science, (4) visualization, and (5) communication methods for collaboration and dissemination. We provide an overview of the current suite of training initiatives available to environmental scientists and models for closing the skill-transfer gap

AGILE Paradigm: The next generation collaborative MDO for the development of aeronautical systems

The research and innovation EU funded AGILE project has developed the next generation of aircraft Multidisciplinary Design and Optimization (MDO) processes, which target significant reductions in aircraft development costs and time to market, leading to more cost-effective and greener aircraft solutions. 19 industry, research and academia partners from Europe, Canada and Russia have developed solutions to cope with the challenges of collaborative design and optimization of complex aeronautical products. In order to accelerate the deployment of large-scale, collaborative multidisciplinary design and optimization, a novel approach, the so-called “AGILE Paradigm”, has been conceived. The AGILE Paradigm is defined as a “blueprint for MDO”, accelerating the deployment and the operations of collaborative “MDO systems” and enabling the development of complex products practiced by multi-site and cross-organizational design teams, having heterogeneous expertise. A set of technologies has been developed by the AGILE consortium to enable the implementation of the AGILE Paradigm principles, thus delivering not only an abstract formalization of the approach, but also an applicable framework. The collection of all the technologies constitutes the so-called “AGILE Framework”, which has been applied for the design and the optimization of multiple aircraft configurations. The ambition of the AGILE Paradigm was set to reduce the lead time of 40% with respect to the current state-of-the-art. This work reviews the evolution of the MDO systems, underlines the open challenges tackled by the AGILE project, and introduces the main architectural concepts behind the AGILE Paradigm. Thereafter, an overview of the application design cases is presented, focusing of the main challenges and achievements. The AGILE technologies enabled the consortium to formulate and to solve in 15 months 7 MDO applications in parallel for the development of 7 novel aircraft configurations, demonstrating time savings beyond the 40% goal

Transposable elements promote the evolution of genome streamlining

Eukaryotes and prokaryotes have distinct genome architectures, withmarked differences in genome size, the ratio of coding/non-coding DNA,and the abundance of transposable elements (TEs). As TEs replicate inde-pendently of their hosts, the proliferation of TEs is thought to have drivengenome expansion in eukaryotes. However, prokaryotes also have TEs inintergenic spaces, so why do prokaryotes have small, streamlined genomes?Using anin silicomodel describing the genomes of single-celled asexualorganisms that coevolve with TEs, we show that TEs acquired from theenvironment by horizontal gene transfer can promote the evolution ofgenome streamlining. The process depends on local interactions and isunderpinned by rock–paper–scissors dynamics in which populations ofcells with streamlined genomes beat TEs, which beat non-streamlinedgenomes, which beat streamlined genomes, in continuous and repeatingcycles. Streamlining is maladaptive to individual cells, but improves lineageviability by hindering the proliferation of TEs. Streamlining does not evolvein sexually reproducing populations because recombination partially freesTEs from the deleterious effects they cause.This article is part of the theme issue‘The secret lives of microbial mobilegenetic elements’

Cloud and HPC Headway for Next-Generation Management of Projects and Technologies

In the last decade, cloud computing has changed dramatically. More providers and administration contributions have entered the market, and cloud infrastructure, once limited to single-provider data centers, is expanding. This article discusses the shifting cloud foundation and the benefits of decentralizing computing from data centers. These patterns necessitate novel cloud computing architectures. These models may affect linking people and devices, data-intensive computing, the service space, and self-learning frameworks. Finally, we compiled a list of issues to consider while assessing modern cloud frameworks. Architectural and urban design projects breach scale and predictability constraints and seek enhanced competency, maintainability, energy performance, and cost-efficiency. Simulation and large-scale information processing drive this cycle. Advances in calculations and computer power help address the complex elements of a coordinated whole-structure framework. Adaptability is a barrier to the configuration, control, and development of whole-system frameworks. This position paper proposes several solutions for semi-or fully automated projects, such as short-plan boundary space exploration, large-scope high-accuracy simulation, and integrated multidisciplinary development. These computer-intensive operations were previously only accessible to the exam network. Once empowered by cloud computing and high-performance computing, these methods can stimulate intelligent plan measures, leading to enhanced results and shorter development times

TurbEFA: an interdisciplinary effort to investigate the turbulent flow across a forest clearing

the atmosphere within turbulence closure models is mainly limited by a realistic three-dimensional (3D) representation of the vegetation architecture. Within this contribution we present a method to record the 3D vegetation structure and to use this information to derive model parameters that are suitable for numerical flow models. A mixed conifer forest stand around a clearing was scanned and represented by a dense 3D point cloud applying a terrestrial laser scanner. Thus, the plant area density (PAD) with a resolution of one cubic meter was provided for analysis and for numerical simulations. Multi-level high-frequency wind velocity measurements were recorded simultaneously by 27 ultrasonic anemometers on 4 towers for a period of one year. The relationship between wind speed, Reynolds stress and PAD was investigated and a parametrization of the drag coefficient CD by the PAD is suggested. The derived 3D vegetation model and a simpler model (based on classical forest assessments of the site) were applied in a boundary layer model (BLM) and in large-eddy simulations (LES). The spatial development of the turbulent flow over the clearing is further demonstrated by the results of a wind tunnel experiment. The project showed, that the simulation results were improved significantly by the usage of realistic vegetation models. 3D simulations are necessary to depict the influence of heterogeneous canopies on the turbulent flow. Whereas we found limits for the mapping of the vegetation structure within the wind tunnel, there is a considerable potential for numerical simulations. The field measurements and the LES gave new insight into the turbulent flow in the vicinity and across the clearing. The results show that the zones of intensive turbulence development can not be restricted to the locations found in previous studies with more idealized canopies