Community dynamics of insular biotas in space and time

The various features determining species distributions remain enigmatic in ecology. This thesis deals with the spatial and temporal dynamics of land birds on the islands of the Dahlak archipelago, the Red Sea, and of mammals, birds and reptiles among the forest fragments of the archipelago-like east African coastal forest. The bird species richness on the islands of the Dahlak archipelago depended on area, isolation and extent of habitat. Similarly, species richness of the east African forest fragments was related to area, habitat diversity and isolation but the importance of each factor varied among taxa as well as among generalists and specialists. For example, area influenced species richness of most categories except specialist mammals and reptiles, habitat diversity was more important for forest specialists than generalists, and isolation was important only for birds. In both study areas, similarity in bird species composition decreased with increasing distances among isolates suggesting that dispersal from source pools and among isolates facilitate re-colonization. The nested community structure, i.e. species composition of species−poor communities are a subset of species−rich communities, of birds in the Dahlak archipelago depended on area and the distribution of a few habitats. Similarities in community patterns and cooccurrence patterns, at both community and species levels, were mainly related to habitat preferences and corresponding distributions of habitats as well as inter-island distances. Also, the distributional patterns suggest that predator-prey interactions can be a determinant of the spatial distribution of, at least, the prey. There was no evidence of competitive exclusion. The nested structure on the islands of the Dahlak archipelago remained fairly stable over a period of 35 years even in this arid region. The turnover dynamics were broadly predictable from the nested pattern but not always consistent with other expectations from nested community structure. Taken together my results show that mechanisms on varying spatial and temporal scales act on species distributions, and that the influence may vary among taxa mainly depending on dispersal ability. In the case of conservation, comprehensive strategies accounting for these variations are needed

Integrating Citizen Science and GIS for Wildlife Habitat Assessment

With the rapid advancement and popularity of geospatial technologies such as location-aware smartphones, mobile maps, etc., average citizens nowadays can easily contribute georeferenced wildlife data (e.g., wildlife sightings). Due to the wide spread of human settlements and lengthy living histories of citizens in their local areas, citizen-contributed wildlife data could cover large geographic areas over long time spans. Citizen science thus provides great opportunities for collecting wildlife data of extensive spatiotemporal coverage for wildlife habitat assessment. However, citizen-contributed wildlife data may be subject to data quality issues, for example, imprecise spatial position and biased spatial coverage. These issues need to be accounted for when using citizen-contributed data for wildlife habitat assessment. Geovisualization and geospatial analysis capabilities provisioned by geographic information systems (GISs) can be adopted to tackle such data quality issues. This chapter offers an overview of citizen science as a means of collecting wildlife data, the roles of GIS to tackle the data quality issues, and the integration of citizen science and GIS for wildlife habitat assessment. A case study of habitat assessment for the black-and-white snub-nosed monkey (Rhinopithecus bieti) using R. bieti sightings elicited from local villagers in Yunnan, China, is presented as a demonstration

The Hierarchic treatment of marine ecological information from spatial networks of benthic platforms

Measuring biodiversity simultaneously in different locations, at different temporal scales, and over wide spatial scales is of strategic importance for the improvement of our understanding of the functioning of marine ecosystems and for the conservation of their biodiversity. Monitoring networks of cabled observatories, along with other docked autonomous systems (e.g., Remotely Operated Vehicles [ROVs], Autonomous Underwater Vehicles [AUVs], and crawlers), are being conceived and established at a spatial scale capable of tracking energy fluxes across benthic and pelagic compartments, as well as across geographic ecotones. At the same time, optoacoustic imaging is sustaining an unprecedented expansion in marine ecological monitoring, enabling the acquisition of new biological and environmental data at an appropriate spatiotemporal scale. At this stage, one of the main problems for an effective application of these technologies is the processing, storage, and treatment of the acquired complex ecological information. Here, we provide a conceptual overview on the technological developments in the multiparametric generation, storage, and automated hierarchic treatment of biological and environmental information required to capture the spatiotemporal complexity of a marine ecosystem. In doing so, we present a pipeline of ecological data acquisition and processing in different steps and prone to automation. We also give an example of population biomass, community richness and biodiversity data computation (as indicators for ecosystem functionality) with an Internet Operated Vehicle (a mobile crawler). Finally, we discuss the software requirements for that automated data processing at the level of cyber-infrastructures with sensor calibration and control, data banking, and ingestion into large data portals.Peer ReviewedPostprint (published version

What factors influence the rediscovery of lost tetrapod species?

We created a database of lost and rediscovered tetrapod species, identified patterns in their distribution and factors influencing rediscovery. Tetrapod species are being lost at a faster rate than they are being rediscovered, due to slowing rates of rediscovery for amphibians, birds and mammals, and rapid rates of loss for reptiles. Finding lost species and preventing future losses should therefore be a conservation priority. By comparing the taxonomic and spatial distribution of lost and rediscovered tetrapod species, we have identified regions and taxa with many lost species in comparison to those that have been rediscovered—our results may help to prioritise search effort to find them. By identifying factors that influence rediscovery, we have improved our ability to broadly distinguish the types of species that are likely to be found from those that are not (because they are likely to be extinct). Some lost species, particularly those that are small and perceived to be uncharismatic, may have been neglected in terms of conservation effort, and other lost species may be hard to find due to their intrinsic characteristics and the characteristics of the environments they occupy (e.g. nocturnal species, fossorial species and species occupying habitats that are more difficult to survey such as wetlands). These lost species may genuinely await rediscovery. However, other lost species that possess characteristics associated with rediscovery (e.g. large species) and that are also associated with factors that negatively influence rediscovery (e.g. those occupying small islands) are more likely to be extinct. Our results may foster pragmatic search protocols that prioritise lost species likely to still exist

Wild Bird Migration across the Qinghai-Tibetan Plateau: A Transmission Route for Highly Pathogenic H5N1

BACKGROUND: Qinghai Lake in central China has been at the center of debate on whether wild birds play a role in circulation of highly pathogenic avian influenza virus H5N1. In 2005, an unprecedented epizootic at Qinghai Lake killed more than 6000 migratory birds including over 3000 bar-headed geese (Anser indicus). H5N1 subsequently spread to Europe and Africa, and in following years has re-emerged in wild birds along the Central Asia flyway several times. METHODOLOGY/PRINCIPAL FINDINGS: To better understand the potential involvement of wild birds in the spread of H5N1, we studied the movements of bar-headed geese marked with GPS satellite transmitters at Qinghai Lake in relation to virus outbreaks and disease risk factors. We discovered a previously undocumented migratory pathway between Qinghai Lake and the Lhasa Valley of Tibet where 93% of the 29 marked geese overwintered. From 2003-2009, sixteen outbreaks in poultry or wild birds were confirmed on the Qinghai-Tibet Plateau, and the majority were located within the migratory pathway of the geese. Spatial and temporal concordance between goose movements and three potential H5N1 virus sources (poultry farms, a captive bar-headed goose facility, and H5N1 outbreak locations) indicated ample opportunities existed for virus spillover and infection of migratory geese on the wintering grounds. Their potential as a vector of H5N1 was supported by rapid migration movements of some geese and genetic relatedness of H5N1 virus isolated from geese in Tibet and Qinghai Lake. CONCLUSIONS/SIGNIFICANCE: This is the first study to compare phylogenetics of the virus with spatial ecology of its host, and the combined results suggest that wild birds play a role in the spread of H5N1 in this region. However, the strength of the evidence would be improved with additional sequences from both poultry and wild birds on the Qinghai-Tibet Plateau where H5N1 has a clear stronghold