12 research outputs found
Simulating the universe on an intercontinental grid of supercomputers
Understanding the universe is hampered by the elusiveness of its most common
constituent, cold dark matter. Almost impossible to observe, dark matter can be
studied effectively by means of simulation and there is probably no other
research field where simulation has led to so much progress in the last decade.
Cosmological N-body simulations are an essential tool for evolving density
perturbations in the nonlinear regime. Simulating the formation of large-scale
structures in the universe, however, is still a challenge due to the enormous
dynamic range in spatial and temporal coordinates, and due to the enormous
computer resources required. The dynamic range is generally dealt with by the
hybridization of numerical techniques. We deal with the computational
requirements by connecting two supercomputers via an optical network and make
them operate as a single machine. This is challenging, if only for the fact
that the supercomputers of our choice are separated by half the planet, as one
is located in Amsterdam and the other is in Tokyo. The co-scheduling of the two
computers and the 'gridification' of the code enables us to achieve a 90%
efficiency for this distributed intercontinental supercomputer.Comment: Accepted for publication in IEEE Compute
MPWide: a light-weight library for efficient message passing over wide area networks
We present MPWide, a light weight communication library which allows
efficient message passing over a distributed network. MPWide has been designed
to connect application running on distributed (super)computing resources, and
to maximize the communication performance on wide area networks for those
without administrative privileges. It can be used to provide message-passing
between application, move files, and make very fast connections in
client-server environments. MPWide has already been applied to enable
distributed cosmological simulations across up to four supercomputers on two
continents, and to couple two different bloodflow simulations to form a
multiscale simulation.Comment: accepted by the Journal Of Open Research Software, 13 pages, 4
figures, 1 tabl
MPWide: a light-weight library for efficient message passing over wide area networks
We present MPWide, a light weight communication library which allows efficient message passing over a distributed network. MPWide has been designed to connect application running on distributed (super)computing resources, and to maximize the communication performance on wide area networks for those without administrative privileges. It can be used to provide message-passing between application, move files, and make very fast connections in client-server environments. MPWide has already been applied to enable distributed cosmological simulations across up to four supercomputers on two continents, and to couple two different bloodflow simulations to form a multiscale simulation
Multiscale computing for science and engineering in the era of exascale performance
In this position paper, we discuss two relevant topics: (i) generic multiscale computing on emerging exascale high-performing computing environments, and (ii) the scaling of such applications towards the exascale. We will introduce the different phases when developing a multiscale model and simulating it on available computing infrastructure, and argue that we could rely on it both on the conceptual modelling level and also when actually executing the multiscale simulation, and maybe should further develop generic frameworks and software tools to facilitate multiscale computing. Next, we focus on simulating multiscale models on high-end computing resources in the face of emerging exascale performance levels. We will argue that although applications could scale to exascale performance relying on weak scaling and maybe even on strong scaling, there are also clear arguments that such scaling may no longer apply for many applications on these emerging exascale machines and that we need to resort to what we would call multi-scaling
Multiscale Computing in the Exascale Era
We expect that multiscale simulations will be one of the main high performance computing workloads in the exascale era. We propose multiscale computing patterns as a generic vehicle to realise load balanced, fault tolerant and energy aware high performance multiscale computing. Multiscale computing patterns should lead to a separation of concerns, whereby application developers can compose multiscale models and execute multiscale simulations, while pattern software realises optimized, fault tolerant and energy aware multiscale computing. We introduce three multiscale computing patterns, present an example of the extreme scaling pattern, and discuss our vision of how this may shape multiscale computing in the exascale era