Using neural networks to obtain indirect information about the state variables in an alcoholic fermentation process

This work provides a manual design space exploration regarding the structure, type, and inputs of a multilayer neural network (NN) to obtain indirect information about the state variables in the alcoholic fermentation process. The main benefit of our application is to help experts reduce the time needed for making the relevant measurements and to increase the lifecycles of sensors in bioreactors. The novelty of this research is the flexibility of the developed application, the use of a great number of variables, and the comparative presentation of the results obtained with different NNs (feedback vs. feed-forward) and different learning algorithms (Back-Propagation vs. Levenberg–Marquardt). The simulation results show that the feedback neural network outperformed the feed-forward neural network. The NN configuration is relatively flexible (with hidden layers and a number of nodes on each of them), but the number of input and output nodes depends on the fermentation process parameters. After laborious simulations, we determined that using pH and CO2 as inputs reduces the prediction errors of the NN. Thus, besides the most commonly used process parameters like fermentation temperature, time, the initial concentration of the substrate, the substrate concentration, and the biomass concentration, by adding pH and CO2, we obtained the optimum number of input nodes for the network. The optimal configuration in our case was obtained after 1500 iterations using a NN with one hidden layer and 12 neurons on it, seven neurons on the input layer, and one neuron as the output. If properly trained and validated, this model can be used in future research to accurately predict steady-state and dynamic alcoholic fermentation process behaviour and thereby improve process control performance

Parameters optimization applying Monte Carlo methods and Evolutionary Algorithms. Enforcement to a trajectory tracking controller in non-linear systems.

[EN] In this work, a closed-loop control strategy is proposed. It allows tracking optimal profiles for a fed-batch bioprocess. The main advantage of this approach is that the control actions are computed from a linear equations system without linearizing the mathematical model, which allows working in any range. In addition, three techniques are developed to tune the controller. First, a completely probabilistic method, Monte Carlo. Second, a methodology based on Genetic Algorithms, an evolutionary optimization technique. Third, a Hybrid Algorithm, combining above algorithms advantages. Here, the objective function is to find the controller parameters that minimize the trajectory tracking total error. The controller performance is evaluated through simulations under normal operations conditions and parametric uncertainty, using the obtained controller parameters.[ES] En este trabajo se propone una estrategia de control en lazo cerrado para el seguimiento de perfiles óptimos previamente definidos para un bioproceso fed-batch. La mayor ventaja de este enfoque es que las acciones de control se calculan resolviendo un sistema de ecuaciones lineales, sin tener que linealizar el modelo matemático, lo que permite trabajar en cualquier rango. Además, se plantean tres técnicas para la sintonización de los parámetros del controlador diseñado. Primero se propone un método de Monte Carlo, el cual es un método probabilístico. En segundo lugar, se presenta una metodología basada en Algoritmos Genéticos, una técnica evolutiva de optimización. La tercera alternativa es el desarrollo de un Algoritmo Híbrido, diseñado a partir de la combinación de los dos métodos anteriores. En todos los casos, el objetivo es encontrar los parámetros del controlador que minimicen el error total de seguimiento de trayectorias. El desempeño del controlador se evalúa a través de simulaciones en condiciones normales de operación y frente a incertidumbre paramétrica, empleando los parámetros del controlador obtenidos.Este trabajo ha sido realizado con el apoyo del Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET) y del Instituto de Ingeniería Química (IIQ) de la Universidad Nacional de San Juan. Se agradece la colaboración del Dr. Ing. Francisco Rossomando en la implementación del controlador PID neuronal.Fernández, C.; Pantano, N.; Godoy, S.; Serrano, E.; Scaglia, G. (2018). Optimización de Parámetros Utilizando los Métodos de Monte Carlo y Algoritmos Evolutivos. Aplicación a un Controlador de Seguimiento de Trayectoria en Sistemas no Lineales. Revista Iberoamericana de Automática e Informática. 16(1):89-99. doi:10.4995/riai.2018.8796SWORD899916

Distribution-Based Identification of Yield Coefficients in a Baker’s Yeast Bioprocess

A distribution-based identification procedure for estimation of yield coefficients in a baker’s yeast bioprocess is proposed. This procedure transforms a system of differential equations to a system of algebraic equations with respect to unknown parameters. The relation between the state variables is represented by functionals using techniques from distribution theory. A hierarchical structure of identification is used, which allows obtaining a linear algebraic system of equations in the unknown parameters. The coefficients of this algebraic system are functionals depending on the input and state variables evaluated through some test functions from distribution theory. First, only some state equations are evaluated throughout test functions to obtain a set of linear equations in parameters. The results of this first stage of identification are used to express other parameters by linear equations. The process is repeated until all parameters are identified. The performances of the method are analyzed by numerical simulations

Process analytical technology in food biotechnology

Biotechnology is an area where precision and reproducibility are vital. This is due to the fact that products are often in form of food, pharmaceutical or cosmetic products and therefore very close to the human being. To avoid human error during the production or the evaluation of the quality of a product and to increase the optimal utilization of raw materials, a very high amount of automation is desired. Tools in the food and chemical industry that aim to reach this degree of higher automation are summarized in an initiative called Process Analytical Technology (PAT). Within the scope of the PAT, is to provide new measurement technologies for the purpose of closed loop control in biotechnological processes. These processes are the most demanding processes in regards of control issues due to their very often biological rate-determining component. Most important for an automation attempt is deep process knowledge, which can only be achieved via appropriate measurements. These measurements can either be carried out directly, measuring a crucial physical value, or if not accessible either due to the lack of technology or a complicated sample state, via a soft-sensor.Even after several years the ideal aim of the PAT initiative is not fully implemented in the industry and in many production processes. On the one hand a lot effort still needs to be put into the development of more general algorithms which are more easy to implement and especially more reliable. On the other hand, not all the available advances in this field are employed yet. The potential users seem to stick to approved methods and show certain reservations towards new technologies.Die Biotechnologie ist ein Wissenschaftsbereich, in dem hohe Genauigkeit und Wiederholbarkeit eine wichtige Rolle spielen. Dies ist der Tatsache geschuldet, dass die hergestellten Produkte sehr oft den Bereichen Nahrungsmitteln, Pharmazeutika oder Kosmetik angehöhren und daher besonders den Menschen beeinflussen. Um den menschlichen Fehler bei der Produktion zu vermeiden, die Qualität eines Produktes zu sichern und die optimale Verwertung der Rohmaterialen zu gewährleisten, wird ein besonders hohes Maß an Automation angestrebt. Die Werkzeuge, die in der Nahrungsmittel- und chemischen Industrie hierfür zum Einsatz kommen, werden in der Process Analytical Technology (PAT) Initiative zusammengefasst. Ziel der PAT ist die Entwicklung zuverlässiger neuer Methoden, um Prozesse zu beschreiben und eine automatische Regelungsstrategie zu realisieren. Biotechnologische Prozesse gehören hierbei zu den aufwändigsten Regelungsaufgaben, da in den meisten Fällen eine biologische Komponente der entscheidende Faktor ist. Entscheidend für eine erfolgreiche Regelungsstrategie ist ein hohes Maß an Prozessverständnis. Dieses kann entweder durch eine direkte Messung der entscheidenden physikalischen, chemischen oder biologischen Größen gewonnen werden oder durch einen SoftSensor. Zusammengefasst zeigt sich, dass das finale Ziel der PAT Initiative auch nach einigen Jahren des Propagierens weder komplett in der Industrie noch bei vielen Produktionsprozessen angekommen ist. Auf der einen Seite liegt dies mit Sicherheit an der Tatsache, dass noch viel Arbeit in die Generalisierung von Algorithmen gesteckt werden muss. Diese müsse einfacher zu implementieren und vor allem noch zuverlässiger in der Funktionsweise sein. Auf der anderen Seite wurden jedoch auch Algorithmen, Regelungsstrategien und eigne Ansätze für einen neuartigen Sensor sowie einen Soft-Sensors vorgestellt, die großes Potential zeigen. Nicht zuletzt müssen die möglichen Anwender neue Strategien einsetzen und Vorbehalte gegenüber unbekannten Technologien ablegen

Batch-to-batch iterative learning control of a fed-batch fermentation process

PhD ThesisRecently, iterative learning control (ILC) has been used in the run-to-run control of batch processes to directly update the control trajectory. The basic idea of ILC is to update the control trajectory for a new batch run using the information from previous batch runs so that the output trajectory converges asymptotically to the desired reference trajectory. The control policy updating is calculated using linearised models around the nominal reference process input and output trajectories. The linearised models are typically identified using multiple linear regression (MLR), partial least squares (PLS) regression, or principal component regression (PCR). ILC has been shown to be a promising method to address model-plant mismatches and unknown disturbances. This work presents several improvements of batch to batch ILC strategy with applications to a simulated fed-batch fermentation process. In order to enhance the reliability of ILC, model prediction confidence is incorporated in the ILC optimization objective function. As a result of the incorporation, wide model prediction confidence bounds are penalized in order to avoid unreliable control policy updating. This method has been proven to be very effective for selected model prediction confidence bounds penalty factors. In the attempt to further improve the performance of ILC, averaged reference trajectories and sliding window techniques were introduced. To reduce the influence of measurement noise, control policy is updated on the average input and output trajectories of the past a few batches instead of just the immediate previous batch. The linearised models are re-identified using a sliding window of past batches in that the earliest batch is removed with the newest batch added to the model identification data set. The effects of various parameters were investigated for MLR, PCR and PLS method. The technique significantly improves the control performance. In model based ILC the weighting matrices, Q and R, in the objective function have a significant impact on the control performance. Therefore, in the quest to exploit the potential of objective function, adaptive weighting parameters were attempted to study the performance of batch to batch ILC with updated models. Significant improvements in the stability of the performance for all the three methods were noticed. All the three techniques suggested have established improvements either in stability, reliability and/or convergence speed. To further investigate the versatility of ILC, the above mentioned techniques were combined and the results are discussed in this thesis

Development and validation of extraction and analytical methods for speciation analysis of selenised yeast using hyphenated mass spectrometric techniques

Selenium is an essential trace element for human and animal health. Numerous studies reported selenium to possess antioxidant effects, anticarcinogenicity and fertility improvements to name a few. The assimilation of selenium into the yeast via the sulfur metabolic pathway creates selenised yeast which is one of the primary sources of selenium supplementation. In this thesis, novel approaches to the extraction and characterisation of commercial selenised yeast products are described. Extraction procedures were developed for selenomethionine determination. These methods involved both enzymatic and chemical extraction approaches and utilised microwave and ultrasonication energy for the purpose of liberating intracellular selenomethionine. Both the enzymatic and chemical extraction methods were subsequently validated for determination of the analyte. A quantitative assay was also developed for the determination of chiral enantiomers of selenomethionine. The method was applied to commercially-available selenised yeast to characterise any differences in the water-soluble extracts of the products. Significant differences were evident, not only from chiral composition but also from the selenocompounds present in the water extract. Further screening of the water extract by HPLC-ICP-MS revealed numerous other selenocompounds. While coupling of HPLC to ICP-MS was sufficient as an investigative screening tool, selenocompound identification was not possible unless a standard of the analyte was available. To combat these issues other mass spectrometric techniques were investigated. The target water-soluble extracts were lyophilised and resuspended to increase analyte concentration and were analysed by liquid chromatography electrospray quadrupole time-of-flight mass spectrometry (LC-ESI-QTOF-MS). Selenium-containing species were confirmed by selenium’s unique isotopic pattern. Determination of the elemental composition and proposed structure of some of these previously unreported selenocompounds was possible due to the accurate molecular mass from the first mass analyser and from MS2 fragmentation analysis. Therefore, LC- ESI-QTOF-MS may be used as a fingerprint tool to make comparisons between commercially-available selenised yeast products

Book of abstracts of the 10th International Chemical and Biological Engineering Conference: CHEMPOR 2008

This book contains the extended abstracts presented at the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008, held in Braga, Portugal, over 3 days, from the 4th to the 6th of September, 2008. Previous editions took place in Lisboa (1975, 1889, 1998), Braga (1978), Póvoa de Varzim (1981), Coimbra (1985, 2005), Porto (1993), and Aveiro (2001). The conference was jointly organized by the University of Minho, “Ordem dos Engenheiros”, and the IBB - Institute for Biotechnology and Bioengineering with the usual support of the “Sociedade Portuguesa de Química” and, by the first time, of the “Sociedade Portuguesa de Biotecnologia”. Thirty years elapsed since CHEMPOR was held at the University of Minho, organized by T.R. Bott, D. Allen, A. Bridgwater, J.J.B. Romero, L.J.S. Soares and J.D.R.S. Pinheiro. We are fortunate to have Profs. Bott, Soares and Pinheiro in the Honor Committee of this 10th edition, under the high Patronage of his Excellency the President of the Portuguese Republic, Prof. Aníbal Cavaco Silva. The opening ceremony will confer Prof. Bott with a “Long Term Achievement” award acknowledging the important contribution Prof. Bott brought along more than 30 years to the development of the Chemical Engineering science, to the launch of CHEMPOR series and specially to the University of Minho. Prof. Bott’s inaugural lecture will address the importance of effective energy management in processing operations, particularly in the effectiveness of heat recovery and the associated reduction in greenhouse gas emission from combustion processes. The CHEMPOR series traditionally brings together both young and established researchers and end users to discuss recent developments in different areas of Chemical Engineering. The scope of this edition is broadening out by including the Biological Engineering research. One of the major core areas of the conference program is life quality, due to the importance that Chemical and Biological Engineering plays in this area. “Integration of Life Sciences & Engineering” and “Sustainable Process-Product Development through Green Chemistry” are two of the leading themes with papers addressing such important issues. This is complemented with additional leading themes including “Advancing the Chemical and Biological Engineering Fundamentals”, “Multi-Scale and/or Multi-Disciplinary Approach to Process-Product Innovation”, “Systematic Methods and Tools for Managing the Complexity”, and “Educating Chemical and Biological Engineers for Coming Challenges” which define the extended abstracts arrangements along this book. A total of 516 extended abstracts are included in the book, consisting of 7 invited lecturers, 15 keynote, 105 short oral presentations given in 5 parallel sessions, along with 6 slots for viewing 389 poster presentations. Full papers are jointly included in the companion Proceedings in CD-ROM. All papers have been reviewed and we are grateful to the members of scientific and organizing committees for their evaluations. It was an intensive task since 610 submitted abstracts from 45 countries were received. It has been an honor for us to contribute to setting up CHEMPOR 2008 during almost two years. We wish to thank the authors who have contributed to yield a high scientific standard to the program. We are thankful to the sponsors who have contributed decisively to this event. We also extend our gratefulness to all those who, through their dedicated efforts, have assisted us in this task. On behalf of the Scientific and Organizing Committees we wish you that together with an interesting reading, the scientific program and the social moments organized will be memorable for all.Fundação para a Ciência e a Tecnologia (FCT

Proceedings of the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008

This volume contains full papers presented at the 10th International Chemical and Biological Engineering Conference - CHEMPOR 2008, held in Braga, Portugal, between September 4th and 6th, 2008.FC