Results of the Ontology Alignment Evaluation Initiative 2015

cheatham2016aInternational audienceOntology matching consists of finding correspondences between semantically related entities of two ontologies. OAEI campaigns aim at comparing ontology matching systems on precisely defined test cases. These test cases can use ontologies of different nature (from simple thesauri to expressive OWL ontologies) and use different modalities, e.g., blind evaluation, open evaluation and consensus. OAEI 2015 offered 8 tracks with 15 test cases followed by 22 participants. Since 2011, the campaign has been using a new evaluation modality which provides more automation to the evaluation. This paper is an overall presentation of the OAEI 2015 campaign

Clona Results for OAEI 2015

Abstract. This paper presents the results of Clona in the Ontology Alignment Evaluation Initiative campaign (OAEI) 2015. We only participated in Multifarm track, since Clona develops specic techniques for aligning multilingual ontologies. We rst give an overview of our alignment system; then we detail the techniques used in our contribution to deal with cross-lingual ontology alignment. Last, we present the results with a thorough analysis and discussion, then we conclude by listing some future work on Clona

RiMOM Results for OAEI 2015

Abstract. This paper presents the results of RiMOM in the Ontology Alignment Evaluation Initiative (OAEI) 2015. We only participated in Instance Matching@OAEI2015. We first describe the overall framework of our matching System (RiMOM); then we detail the techniques used in the framework for instance matching. Last, we give a thorough analysis on our results and discuss some future work on RiMOM

Results of the ontology alignment evaluation initiative 2019

The Ontology Alignment Evaluation Initiative (OAEI) aims at comparing ontology matching systems on precisely defined test cases. These test cases can be based on ontologies of different levels of complexity (from simple thesauri to expressive OWL ontologies) and use different evaluation modalities (e.g., blind evaluation, open evaluation, or consensus). The OAEI 2019 campaign offered 11 tracks with 29 test cases, and was attended by 20 participants. This paper is an overall presentation of that campaign

Dividing the Ontology Alignment Task with Semantic Embeddings and Logic-based Modules

Large ontologies still pose serious challenges to state-of-the-art ontology alignment systems. In this paper we present an approach that combines a neural embedding model and logic-based modules to accurately divide an input ontology matching task into smaller and more tractable matching (sub)tasks. We have conducted a comprehensive evaluation using the datasets of the Ontology Alignment Evaluation Initiative. The results are encouraging and suggest that the proposed method is adequate in practice and can be integrated within the workflow of systems unable to cope with very large ontologies

Biomedical ontology alignment: An approach based on representation learning

While representation learning techniques have shown great promise in application to a number of different NLP tasks, they have had little impact on the problem of ontology matching. Unlike past work that has focused on feature engineering, we present a novel representation learning approach that is tailored to the ontology matching task. Our approach is based on embedding ontological terms in a high-dimensional Euclidean space. This embedding is derived on the basis of a novel phrase retrofitting strategy through which semantic similarity information becomes inscribed onto fields of pre-trained word vectors. The resulting framework also incorporates a novel outlier detection mechanism based on a denoising autoencoder that is shown to improve performance. An ontology matching system derived using the proposed framework achieved an F-score of 94% on an alignment scenario involving the Adult Mouse Anatomical Dictionary and the Foundational Model of Anatomy ontology (FMA) as targets. This compares favorably with the best performing systems on the Ontology Alignment Evaluation Initiative anatomy challenge. We performed additional experiments on aligning FMA to NCI Thesaurus and to SNOMED CT based on a reference alignment extracted from the UMLS Metathesaurus. Our system obtained overall F-scores of 93.2% and 89.2% for these experiments, thus achieving state-of-the-art results

Comparison of ontology alignment systems across single matching task via the McNemar's test

Ontology alignment is widely-used to find the correspondences between different ontologies in diverse fields.After discovering the alignments,several performance scores are available to evaluate them.The scores typically require the identified alignment and a reference containing the underlying actual correspondences of the given ontologies.The current trend in the alignment evaluation is to put forward a new score(e.g., precision, weighted precision, etc.)and to compare various alignments by juxtaposing the obtained scores. However,it is substantially provocative to select one measure among others for comparison.On top of that, claiming if one system has a better performance than one another cannot be substantiated solely by comparing two scalars.In this paper,we propose the statistical procedures which enable us to theoretically favor one system over one another.The McNemar's test is the statistical means by which the comparison of two ontology alignment systems over one matching task is drawn.The test applies to a 2x2 contingency table which can be constructed in two different ways based on the alignments,each of which has their own merits/pitfalls.The ways of the contingency table construction and various apposite statistics from the McNemar's test are elaborated in minute detail.In the case of having more than two alignment systems for comparison, the family-wise error rate is expected to happen. Thus, the ways of preventing such an error are also discussed.A directed graph visualizes the outcome of the McNemar's test in the presence of multiple alignment systems.From this graph, it is readily understood if one system is better than one another or if their differences are imperceptible.The proposed statistical methodologies are applied to the systems participated in the OAEI 2016 anatomy track, and also compares several well-known similarity metrics for the same matching problem

Cross-lingual Entity Alignment via Joint Attribute-Preserving Embedding

Entity alignment is the task of finding entities in two knowledge bases (KBs) that represent the same real-world object. When facing KBs in different natural languages, conventional cross-lingual entity alignment methods rely on machine translation to eliminate the language barriers. These approaches often suffer from the uneven quality of translations between languages. While recent embedding-based techniques encode entities and relationships in KBs and do not need machine translation for cross-lingual entity alignment, a significant number of attributes remain largely unexplored. In this paper, we propose a joint attribute-preserving embedding model for cross-lingual entity alignment. It jointly embeds the structures of two KBs into a unified vector space and further refines it by leveraging attribute correlations in the KBs. Our experimental results on real-world datasets show that this approach significantly outperforms the state-of-the-art embedding approaches for cross-lingual entity alignment and could be complemented with methods based on machine translation