9,780 research outputs found

    Graduate Catalog of Studies, 2023-2024

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    TANDEM: taming failures in next-generation datacenters with emerging memory

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    The explosive growth of online services, leading to unforeseen scales, has made modern datacenters highly prone to failures. Taming these failures hinges on fast and correct recovery, minimizing service interruptions. Applications, owing to recovery, entail additional measures to maintain a recoverable state of data and computation logic during their failure-free execution. However, these precautionary measures have severe implications on performance, correctness, and programmability, making recovery incredibly challenging to realize in practice. Emerging memory, particularly non-volatile memory (NVM) and disaggregated memory (DM), offers a promising opportunity to achieve fast recovery with maximum performance. However, incorporating these technologies into datacenter architecture presents significant challenges; Their distinct architectural attributes, differing significantly from traditional memory devices, introduce new semantic challenges for implementing recovery, complicating correctness and programmability. Can emerging memory enable fast, performant, and correct recovery in the datacenter? This thesis aims to answer this question while addressing the associated challenges. When architecting datacenters with emerging memory, system architects face four key challenges: (1) how to guarantee correct semantics; (2) how to efficiently enforce correctness with optimal performance; (3) how to validate end-to-end correctness including recovery; and (4) how to preserve programmer productivity (Programmability). This thesis aims to address these challenges through the following approaches: (a) defining precise consistency models that formally specify correct end-to-end semantics in the presence of failures (consistency models also play a crucial role in programmability); (b) developing new low-level mechanisms to efficiently enforce the prescribed models given the capabilities of emerging memory; and (c) creating robust testing frameworks to validate end-to-end correctness and recovery. We start our exploration with non-volatile memory (NVM), which offers fast persistence capabilities directly accessible through the processor’s load-store (memory) interface. Notably, these capabilities can be leveraged to enable fast recovery for Log-Free Data Structures (LFDs) while maximizing performance. However, due to the complexity of modern cache hierarchies, data hardly persist in any specific order, jeop- ardizing recovery and correctness. Therefore, recovery needs primitives that explicitly control the order of updates to NVM (known as persistency models). We outline the precise specification of a novel persistency model – Release Persistency (RP) – that provides a consistency guarantee for LFDs on what remains in non-volatile memory upon failure. To efficiently enforce RP, we propose a novel microarchitecture mechanism, lazy release persistence (LRP). Using standard LFDs benchmarks, we show that LRP achieves fast recovery while incurring minimal overhead on performance. We continue our discussion with memory disaggregation which decouples memory from traditional monolithic servers, offering a promising pathway for achieving very high availability in replicated in-memory data stores. Achieving such availability hinges on transaction protocols that can efficiently handle recovery in this setting, where compute and memory are independent. However, there is a challenge: disaggregated memory (DM) fails to work with RPC-style protocols, mandating one-sided transaction protocols. Exacerbating the problem, one-sided transactions expose critical low-level ordering to architects, posing a threat to correctness. We present a highly available transaction protocol, Pandora, that is specifically designed to achieve fast recovery in disaggregated key-value stores (DKVSes). Pandora is the first one-sided transactional protocol that ensures correct, non-blocking, and fast recovery in DKVS. Our experimental implementation artifacts demonstrate that Pandora achieves fast recovery and high availability while causing minimal disruption to services. Finally, we introduce a novel target litmus-testing framework – DART – to validate the end-to-end correctness of transactional protocols with recovery. Using DART’s target testing capabilities, we have found several critical bugs in Pandora, highlighting the need for robust end-to-end testing methods in the design loop to iteratively fix correctness bugs. Crucially, DART is lightweight and black-box, thereby eliminating any intervention from the programmers

    Faster inference from state space models via GPU computing

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    Funding: C.F.-J. is funded via a doctoral scholarship from the University of St Andrews, School of Mathematics and Statistics.Inexpensive Graphics Processing Units (GPUs) offer the potential to greatly speed up computation by employing their massively parallel architecture to perform arithmetic operations more efficiently. Population dynamics models are important tools in ecology and conservation. Modern Bayesian approaches allow biologically realistic models to be constructed and fitted to multiple data sources in an integrated modelling framework based on a class of statistical models called state space models. However, model fitting is often slow, requiring hours to weeks of computation. We demonstrate the benefits of GPU computing using a model for the population dynamics of British grey seals, fitted with a particle Markov chain Monte Carlo algorithm. Speed-ups of two orders of magnitude were obtained for estimations of the log-likelihood, compared to a traditional ‘CPU-only’ implementation, allowing for an accurate method of inference to be used where this was previously too computationally expensive to be viable. GPU computing has enormous potential, but one barrier to further adoption is a steep learning curve, due to GPUs' unique hardware architecture. We provide a detailed description of hardware and software setup, and our case study provides a template for other similar applications. We also provide a detailed tutorial-style description of GPU hardware architectures, and examples of important GPU-specific programming practices.Publisher PDFPeer reviewe

    Graduate Catalog of Studies, 2023-2024

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    GPU-optimized approaches to molecular docking-based virtual screening in drug discovery: A comparative analysis

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    Finding a novel drug is a very long and complex procedure. Using computer simulations, it is possible to accelerate the preliminary phases by performing a virtual screening that filters a large set of drug candidates to a manageable number. This paper presents the implementations and comparative analysis of two GPU-optimized implementations of a virtual screening algorithm targeting novel GPU architectures. This work focuses on the analysis of parallel computation patterns and their mapping onto the target architecture. The first method adopts a traditional approach that spreads the computation for a single molecule across the entire GPU. The second uses a novel batched approach that exploits the parallel architecture of the GPU to evaluate more molecules in parallel. Experimental results showed a different behavior depending on the size of the database to be screened, either reaching a performance plateau sooner or having a more extended initial transient period to achieve a higher throughput (up to 5x), which is more suitable for extreme-scale virtual screening campaigns

    Resource-aware scheduling for 2D/3D multi-/many-core processor-memory systems

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    This dissertation addresses the complexities of 2D/3D multi-/many-core processor-memory systems, focusing on two key areas: enhancing timing predictability in real-time multi-core processors and optimizing performance within thermal constraints. The integration of an increasing number of transistors into compact chip designs, while boosting computational capacity, presents challenges in resource contention and thermal management. The first part of the thesis improves timing predictability. We enhance shared cache interference analysis for set-associative caches, advancing the calculation of Worst-Case Execution Time (WCET). This development enables accurate assessment of cache interference and the effectiveness of partitioned schedulers in real-world scenarios. We introduce TCPS, a novel task and cache-aware partitioned scheduler that optimizes cache partitioning based on task-specific WCET sensitivity, leading to improved schedulability and predictability. Our research explores various cache and scheduling configurations, providing insights into their performance trade-offs. The second part focuses on thermal management in 2D/3D many-core systems. Recognizing the limitations of Dynamic Voltage and Frequency Scaling (DVFS) in S-NUCA many-core processors, we propose synchronous thread migrations as a thermal management strategy. This approach culminates in the HotPotato scheduler, which balances performance and thermal safety. We also introduce 3D-TTP, a transient temperature-aware power budgeting strategy for 3D-stacked systems, reducing the need for Dynamic Thermal Management (DTM) activation. Finally, we present 3QUTM, a novel method for 3D-stacked systems that combines core DVFS and memory bank Low Power Modes with a learning algorithm, optimizing response times within thermal limits. This research contributes significantly to enhancing performance and thermal management in advanced processor-memory systems

    UMSL Bulletin 2022-2023

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    The 2022-2023 Bulletin and Course Catalog for the University of Missouri St. Louis.https://irl.umsl.edu/bulletin/1087/thumbnail.jp

    Tools for efficient Deep Learning

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    In the era of Deep Learning (DL), there is a fast-growing demand for building and deploying Deep Neural Networks (DNNs) on various platforms. This thesis proposes five tools to address the challenges for designing DNNs that are efficient in time, in resources and in power consumption. We first present Aegis and SPGC to address the challenges in improving the memory efficiency of DL training and inference. Aegis makes mixed precision training (MPT) stabler by layer-wise gradient scaling. Empirical experiments show that Aegis can improve MPT accuracy by at most 4\%. SPGC focuses on structured pruning: replacing standard convolution with group convolution (GConv) to avoid irregular sparsity. SPGC formulates GConv pruning as a channel permutation problem and proposes a novel heuristic polynomial-time algorithm. Common DNNs pruned by SPGC have maximally 1\% higher accuracy than prior work. This thesis also addresses the challenges lying in the gap between DNN descriptions and executables by Polygeist for software and POLSCA for hardware. Many novel techniques, e.g. statement splitting and memory partitioning, are explored and used to expand polyhedral optimisation. Polygeist can speed up software execution in sequential and parallel by 2.53 and 9.47 times on Polybench/C. POLSCA achieves 1.5 times speedup over hardware designs directly generated from high-level synthesis on Polybench/C. Moreover, this thesis presents Deacon, a framework that generates FPGA-based DNN accelerators of streaming architectures with advanced pipelining techniques to address the challenges from heterogeneous convolution and residual connections. Deacon provides fine-grained pipelining, graph-level optimisation, and heuristic exploration by graph colouring. Compared with prior designs, Deacon shows resource/power consumption efficiency improvement of 1.2x/3.5x for MobileNets and 1.0x/2.8x for SqueezeNets. All these tools are open source, some of which have already gained public engagement. We believe they can make efficient deep learning applications easier to build and deploy.Open Acces

    Vector-Processing for Mobile Devices: Benchmark and Analysis

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    Vector processing has become commonplace in today's CPU microarchitectures. Vector instructions improve performance and energy which is crucial for resource-constraint mobile devices. The research community currently lacks a comprehensive benchmark suite to study the benefits of vector processing for mobile devices. This paper presents Swan-an extensive vector processing benchmark suite for mobile applications. Swan consists of a diverse set of data-parallel workloads from four commonly used mobile applications: operating system, web browser, audio/video messaging application, and PDF rendering engine. Using Swan benchmark suite, we conduct a detailed analysis of the performance, power, and energy consumption of vectorized workloads, and show that: (a) Vectorized kernels increase the pressure on cache hierarchy due to the higher rate of memory requests. (b) Vector processing is more beneficial for workloads with lower precision operations and higher cache hit rates. (c) Limited Instruction-Level Parallelism and strided memory accesses to multi-dimensional data structures prevent vector processing benefits from scaling with more SIMD functional units and wider registers. (d) Despite lower computation throughput than domain-specific accelerators, such as GPU, vector processing outperforms these accelerators for kernels with lower operation counts. Finally, we show five common computation patterns in mobile data-parallel workloads that dominate the execution time.Comment: 2023 IEEE International Symposium on Workload Characterization (IISWC
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