4,106 research outputs found
Locally embedded presages of global network bursts
Spontaneous, synchronous bursting of neural population is a widely observed
phenomenon in nervous networks, which is considered important for functions and
dysfunctions of the brain. However, how the global synchrony across a large
number of neurons emerges from an initially non-bursting network state is not
fully understood. In this study, we develop a new state-space reconstruction
method combined with high-resolution recordings of cultured neurons. This
method extracts deterministic signatures of upcoming global bursts in "local"
dynamics of individual neurons during non-bursting periods. We find that local
information within a single-cell time series can compare with or even
outperform the global mean field activity for predicting future global bursts.
Moreover, the inter-cell variability in the burst predictability is found to
reflect the network structure realized in the non-bursting periods. These
findings demonstrate the deterministic mechanisms underlying the locally
concentrated early-warnings of the global state transition in self-organized
networks
Neural activity classification with machine learning models trained on interspike interval series data
The flow of information through the brain is reflected by the activity
patterns of neural cells. Indeed, these firing patterns are widely used as
input data to predictive models that relate stimuli and animal behavior to the
activity of a population of neurons. However, relatively little attention was
paid to single neuron spike trains as predictors of cell or network properties
in the brain. In this work, we introduce an approach to neuronal spike train
data mining which enables effective classification and clustering of neuron
types and network activity states based on single-cell spiking patterns. This
approach is centered around applying state-of-the-art time series
classification/clustering methods to sequences of interspike intervals recorded
from single neurons. We demonstrate good performance of these methods in tasks
involving classification of neuron type (e.g. excitatory vs. inhibitory cells)
and/or neural circuit activity state (e.g. awake vs. REM sleep vs. nonREM sleep
states) on an open-access cortical spiking activity dataset
Fractals in the Nervous System: conceptual Implications for Theoretical Neuroscience
This essay is presented with two principal objectives in mind: first, to
document the prevalence of fractals at all levels of the nervous system, giving
credence to the notion of their functional relevance; and second, to draw
attention to the as yet still unresolved issues of the detailed relationships
among power law scaling, self-similarity, and self-organized criticality. As
regards criticality, I will document that it has become a pivotal reference
point in Neurodynamics. Furthermore, I will emphasize the not yet fully
appreciated significance of allometric control processes. For dynamic fractals,
I will assemble reasons for attributing to them the capacity to adapt task
execution to contextual changes across a range of scales. The final Section
consists of general reflections on the implications of the reviewed data, and
identifies what appear to be issues of fundamental importance for future
research in the rapidly evolving topic of this review
The Physics of Living Neural Networks
Improvements in technique in conjunction with an evolution of the theoretical
and conceptual approach to neuronal networks provide a new perspective on
living neurons in culture. Organization and connectivity are being measured
quantitatively along with other physical quantities such as information, and
are being related to function. In this review we first discuss some of these
advances, which enable elucidation of structural aspects. We then discuss two
recent experimental models that yield some conceptual simplicity. A
one-dimensional network enables precise quantitative comparison to analytic
models, for example of propagation and information transport. A two-dimensional
percolating network gives quantitative information on connectivity of cultured
neurons. The physical quantities that emerge as essential characteristics of
the network in vitro are propagation speeds, synaptic transmission, information
creation and capacity. Potential application to neuronal devices is discussed.Comment: PACS: 87.18.Sn, 87.19.La, 87.80.-y, 87.80.Xa, 64.60.Ak Keywords:
complex systems, neuroscience, neural networks, transport of information,
neural connectivity, percolation
http://www.weizmann.ac.il/complex/tlusty/papers/PhysRep2007.pdf
http://www.weizmann.ac.il/complex/EMoses/pdf/PhysRep-448-56.pd
Characterization of Early Cortical Neural Network Development in Multiwell Microelectrode Array Plates.
We examined neural network ontogeny using microelectrode array (MEA) recordings made in multiwell MEA (mwMEA) plates over the first 12 days in vitro (DIV). In primary cortical cultures, action potential spiking activity developed rapidly between DIV 5 and 12. Spiking was sporadic and unorganized at early DIV, and became progressively more organized with time, with bursting parameters, synchrony, and network bursting increasing between DIV 5 and 12. We selected 12 features to describe network activity; principal components analysis using these features demonstrated segregation of data by age at both the well and plate levels. Using random forest classifiers and support vector machines, we demonstrated that four features (coefficient of variation [CV] of within-burst interspike interval, CV of interburst interval, network spike rate, and burst rate) could predict the age of each well recording with >65% accuracy. When restricting the classification to a binary decision, accuracy improved to as high as 95%. Further, we present a novel resampling approach to determine the number of wells needed for comparing different treatments. Overall, these results demonstrate that network development on mwMEA plates is similar to development in single-well MEAs. The increased throughput of mwMEAs will facilitate screening drugs, chemicals, or disease states for effects on neurodevelopment.EC was supported by a Wellcome Trust PhD studentship and NIHR Cambridge Biomedical Research Centre studentship. DH was supported by student services contract #EP-13-D-000108 and by a travelling fellowship from the Company of Biologists.This is the final version of the article. It first appeared from SAGE Publications via https://doi.org/10.1177/108705711664052
Model-free reconstruction of neuronal network connectivity from calcium imaging signals
A systematic assessment of global neural network connectivity through direct
electrophysiological assays has remained technically unfeasible even in
dissociated neuronal cultures. We introduce an improved algorithmic approach
based on Transfer Entropy to reconstruct approximations to network structural
connectivities from network activity monitored through calcium fluorescence
imaging. Based on information theory, our method requires no prior assumptions
on the statistics of neuronal firing and neuronal connections. The performance
of our algorithm is benchmarked on surrogate time-series of calcium
fluorescence generated by the simulated dynamics of a network with known
ground-truth topology. We find that the effective network topology revealed by
Transfer Entropy depends qualitatively on the time-dependent dynamic state of
the network (e.g., bursting or non-bursting). We thus demonstrate how
conditioning with respect to the global mean activity improves the performance
of our method. [...] Compared to other reconstruction strategies such as
cross-correlation or Granger Causality methods, our method based on improved
Transfer Entropy is remarkably more accurate. In particular, it provides a good
reconstruction of the network clustering coefficient, allowing to discriminate
between weakly or strongly clustered topologies, whereas on the other hand an
approach based on cross-correlations would invariantly detect artificially high
levels of clustering. Finally, we present the applicability of our method to
real recordings of in vitro cortical cultures. We demonstrate that these
networks are characterized by an elevated level of clustering compared to a
random graph (although not extreme) and by a markedly non-local connectivity.Comment: 54 pages, 8 figures (+9 supplementary figures), 1 table; submitted
for publicatio
Temporal ordering of input modulates connectivity formation in a developmental neuronal network model of the cortex
Preterm infant brain activity is discontinuous; bursts of activity recorded using EEG (electroencephalography), thought to be driven by subcortical regions, display scale free properties and exhibit a complex temporal ordering known as long-range temporal correlations (LRTCs). During brain development, activity-dependent mechanisms are essential for synaptic connectivity formation, and abolishing burst activity in animal models leads to weak disorganised synaptic connectivity. Moreover, synaptic pruning shares similar mechanisms to spike-timing dependent plasticity (STDP), suggesting that the timing of activity may play a critical role in connectivity formation. We investigated, in a computational model of leaky integrate-and-fire neurones, whether the temporal ordering of burst activity within an external driving input could modulate connectivity formation in the network. Connectivity evolved across the course of simulations using an approach analogous to STDP, from networks with initial random connectivity. Small-world connectivity and hub neurones emerged in the network structure—characteristic properties of mature brain networks. Notably, driving the network with an external input which exhibited LRTCs in the temporal ordering of burst activity facilitated the emergence of these network properties, increasing the speed with which they emerged compared with when the network was driven by the same input with the bursts randomly ordered in time. Moreover, the emergence of small-world properties was dependent on the strength of the LRTCs. These results suggest that the temporal ordering of burst activity could play an important role in synaptic connectivity formation and the emergence of small-world topology in the developing brain
Avalanche analysis from multi-electrode ensemble recordings in cat, monkey and human cerebral cortex during wakefulness and sleep
Self-organized critical states are found in many natural systems, from
earthquakes to forest fires, they have also been observed in neural systems,
particularly, in neuronal cultures. However, the presence of critical states in
the awake brain remains controversial. Here, we compared avalanche analyses
performed on different in vivo preparations during wakefulness, slow-wave sleep
and REM sleep, using high-density electrode arrays in cat motor cortex (96
electrodes), monkey motor cortex and premotor cortex and human temporal cortex
(96 electrodes) in epileptic patients. In neuronal avalanches defined from
units (up to 160 single units), the size of avalanches never clearly scaled as
power-law, but rather scaled exponentially or displayed intermediate scaling.
We also analyzed the dynamics of local field potentials (LFPs) and in
particular LFP negative peaks (nLFPs) among the different electrodes (up to 96
sites in temporal cortex or up to 128 sites in adjacent motor and pre-motor
cortices). In this case, the avalanches defined from nLFPs displayed power-law
scaling in double log representations, as reported previously in monkey.
However, avalanche defined as positive LFP (pLFP) peaks, which are less
directly related to neuronal firing, also displayed apparent power-law scaling.
Closer examination of this scaling using more reliable cumulative distribution
functions (CDF) and other rigorous statistical measures, did not confirm
power-law scaling. The same pattern was seen for cats, monkey and human, as
well as for different brain states of wakefulness and sleep. We also tested
other alternative distributions. Multiple exponential fitting yielded optimal
fits of the avalanche dynamics with bi-exponential distributions. Collectively,
these results show no clear evidence for power-law scaling or self-organized
critical states in the awake and sleeping brain of mammals, from cat to man.Comment: In press in: Frontiers in Physiology, 2012, special issue "Critical
Brain Dynamics" (Edited by He BY, Daffertshofer A, Boonstra TW); 33 pages, 13
figures. 3 table
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