684 research outputs found
Exploring Subexponential Parameterized Complexity of Completion Problems
Let be a family of graphs. In the -Completion problem,
we are given a graph and an integer as input, and asked whether at most
edges can be added to so that the resulting graph does not contain a
graph from as an induced subgraph. It appeared recently that special
cases of -Completion, the problem of completing into a chordal graph
known as Minimum Fill-in, corresponding to the case of , and the problem of completing into a split graph,
i.e., the case of , are solvable in parameterized
subexponential time . The exploration of this
phenomenon is the main motivation for our research on -Completion.
In this paper we prove that completions into several well studied classes of
graphs without long induced cycles also admit parameterized subexponential time
algorithms by showing that:
- The problem Trivially Perfect Completion is solvable in parameterized
subexponential time , that is -Completion for , a cycle and a path on four
vertices.
- The problems known in the literature as Pseudosplit Completion, the case
where , and Threshold Completion, where , are also solvable in time .
We complement our algorithms for -Completion with the following
lower bounds:
- For , , , and
, -Completion cannot be solved in time
unless the Exponential Time Hypothesis (ETH) fails.
Our upper and lower bounds provide a complete picture of the subexponential
parameterized complexity of -Completion problems for .Comment: 32 pages, 16 figures, A preliminary version of this paper appeared in
the proceedings of STACS'1
The Graph Motif problem parameterized by the structure of the input graph
The Graph Motif problem was introduced in 2006 in the context of biological
networks. It consists of deciding whether or not a multiset of colors occurs in
a connected subgraph of a vertex-colored graph. Graph Motif has been mostly
analyzed from the standpoint of parameterized complexity. The main parameters
which came into consideration were the size of the multiset and the number of
colors. Though, in the many applications of Graph Motif, the input graph
originates from real-life and has structure. Motivated by this prosaic
observation, we systematically study its complexity relatively to graph
structural parameters. For a wide range of parameters, we give new or improved
FPT algorithms, or show that the problem remains intractable. For the FPT
cases, we also give some kernelization lower bounds as well as some ETH-based
lower bounds on the worst case running time. Interestingly, we establish that
Graph Motif is W[1]-hard (while in W[P]) for parameter max leaf number, which
is, to the best of our knowledge, the first problem to behave this way.Comment: 24 pages, accepted in DAM, conference version in IPEC 201
Large induced subgraphs via triangulations and CMSO
We obtain an algorithmic meta-theorem for the following optimization problem.
Let \phi\ be a Counting Monadic Second Order Logic (CMSO) formula and t be an
integer. For a given graph G, the task is to maximize |X| subject to the
following: there is a set of vertices F of G, containing X, such that the
subgraph G[F] induced by F is of treewidth at most t, and structure (G[F],X)
models \phi.
Some special cases of this optimization problem are the following generic
examples. Each of these cases contains various problems as a special subcase:
1) "Maximum induced subgraph with at most l copies of cycles of length 0
modulo m", where for fixed nonnegative integers m and l, the task is to find a
maximum induced subgraph of a given graph with at most l vertex-disjoint cycles
of length 0 modulo m.
2) "Minimum \Gamma-deletion", where for a fixed finite set of graphs \Gamma\
containing a planar graph, the task is to find a maximum induced subgraph of a
given graph containing no graph from \Gamma\ as a minor.
3) "Independent \Pi-packing", where for a fixed finite set of connected
graphs \Pi, the task is to find an induced subgraph G[F] of a given graph G
with the maximum number of connected components, such that each connected
component of G[F] is isomorphic to some graph from \Pi.
We give an algorithm solving the optimization problem on an n-vertex graph G
in time O(#pmc n^{t+4} f(t,\phi)), where #pmc is the number of all potential
maximal cliques in G and f is a function depending of t and \phi\ only. We also
show how a similar running time can be obtained for the weighted version of the
problem. Pipelined with known bounds on the number of potential maximal
cliques, we deduce that our optimization problem can be solved in time
O(1.7347^n) for arbitrary graphs, and in polynomial time for graph classes with
polynomial number of minimal separators
Computing hypergraph width measures exactly
Hypergraph width measures are a class of hypergraph invariants important in
studying the complexity of constraint satisfaction problems (CSPs). We present
a general exact exponential algorithm for a large variety of these measures. A
connection between these and tree decompositions is established. This enables
us to almost seamlessly adapt the combinatorial and algorithmic results known
for tree decompositions of graphs to the case of hypergraphs and obtain fast
exact algorithms.
As a consequence, we provide algorithms which, given a hypergraph H on n
vertices and m hyperedges, compute the generalized hypertree-width of H in time
O*(2^n) and compute the fractional hypertree-width of H in time
O(m*1.734601^n).Comment: 12 pages, 1 figur
Finding Optimal Triangulations Parameterized by Edge Clique Cover
Publisher Copyright: © 2022, The Author(s).We consider problems that can be formulated as a task of finding an optimal triangulation of a graph w.r.t. some notion of optimality. We present algorithms parameterized by the size of a minimum edge clique cover (cc) to such problems. This parameterization occurs naturally in many problems in this setting, e.g., in the perfect phylogeny problem cc is at most the number of taxa, in fractional hypertreewidth cc is at most the number of hyperedges, and in treewidth of Bayesian networks cc is at most the number of non-root nodes. We show that the number of minimal separators of graphs is at most 2 cc, the number of potential maximal cliques is at most 3 cc, and these objects can be listed in times O∗(2 cc) and O∗(3 cc) , respectively, even when no edge clique cover is given as input; the O∗(·) notation omits factors polynomial in the input size. These enumeration algorithms imply O∗(3 cc) time algorithms for problems such as treewidth, weighted minimum fill-in, and feedback vertex set. For generalized and fractional hypertreewidth we give O∗(4 m) time and O∗(3 m) time algorithms, respectively, where m is the number of hyperedges. When an edge clique cover of size cc′ is given as a part of the input we give O∗(2cc′) time algorithms for treewidth, minimum fill-in, and chordal sandwich. This implies an O∗(2 n) time algorithm for perfect phylogeny, where n is the number of taxa. We also give polynomial space algorithms with time complexities O∗(9cc′) and O∗(9cc+O(log2cc)) for problems in this framework.Peer reviewe
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