Higher-Dimensional Timed Automata

We introduce a new formalism of higher-dimensional timed automata, based on van Glabbeek's higher-dimensional automata and Alur's timed automata. We prove that their reachability is PSPACE-complete and can be decided using zone-based algorithms. We also show how to use tensor products to combat state-space explosion and how to extend the setting to higher-dimensional hybrid automata

The Ecce and Logen Partial Evaluators and their Web Interfaces

We present Ecce and Logen, two partial evaluators for Prolog using the online and offline approach respectively. We briefly present the foundations of these tools and discuss various applications. We also present new implementations of these tools, carried out in Ciao Prolog. In addition to a command-line interface new user-friendly web interfaces were developed. These enable non-expert users to specialise logic programs using a web browser, without the need for a local installation

Software Engineering and Petri Nets

This booklet contains the proceedings of the Workshop on Software Engineering and Petri Nets (SEPN), held on June 26, 2000. The workshop was held in conjunction with the 21st International Conference on Application and Theory of Petri Nets (ICATPN-2000), organised by the CPN group of the Department of Computer Science, University of Aarhus, Denmark. The SEPN workshop papers are available in electronic form via the web page:http://www.daimi.au.dk/pn2000/proceeding

Vérification efficace de systèmes à compteurs à l'aide de relaxations

Abstract : Counter systems are popular models used to reason about systems in various fields such as the analysis of concurrent or distributed programs and the discovery and verification of business processes. We study well-established problems on various classes of counter systems. This thesis focusses on three particular systems, namely Petri nets, which are a type of model for discrete systems with concurrent and sequential events, workflow nets, which form a subclass of Petri nets that is suited for modelling and reasoning about business processes, and continuous one-counter automata, a novel model that combines continuous semantics with one-counter automata. For Petri nets, we focus on reachability and coverability properties. We utilize directed search algorithms, using relaxations of Petri nets as heuristics, to obtain novel semi-decision algorithms for reachability and coverability, and positively evaluate a prototype implementation. For workflow nets, we focus on the problem of soundness, a well-established correctness notion for such nets. We precisely characterize the previously widely-open complexity of three variants of soundness. Based on our insights, we develop techniques to verify soundness in practice, based on reachability relaxation of Petri nets. Lastly, we introduce the novel model of continuous one-counter automata. This model is a natural variant of one-counter automata, which allows reasoning in a hybrid manner combining continuous and discrete elements. We characterize the exact complexity of the reachability problem in several variants of the model.Les systèmes à compteurs sont des modèles utilisés afin de raisonner sur les systèmes de divers domaines tels l’analyse de programmes concurrents ou distribués, et la découverte et la vérification de systèmes d’affaires. Nous étudions des problèmes bien établis de différentes classes de systèmes à compteurs. Cette thèse se penche sur trois systèmes particuliers : les réseaux de Petri, qui sont un type de modèle pour les systèmes discrets à événements concurrents et séquentiels ; les « réseaux de processus », qui forment une sous-classe des réseaux de Petri adaptée à la modélisation et au raisonnement des processus d’affaires ; les automates continus à un compteur, un nouveau modèle qui combine une sémantique continue à celles des automates à un compteur. Pour les réseaux de Petri, nous nous concentrons sur les propriétés d’accessibilité et de couverture. Nous utilisons des algorithmes de parcours de graphes, avec des relaxations de réseaux de Petri comme heuristiques, afin d’obtenir de nouveaux algorithmes de semi-décision pour l’accessibilité et la couverture, et nous évaluons positivement un prototype. Pour les «réseaux de processus», nous nous concentrons sur le problème de validité, une notion de correction bien établie pour ces réseaux. Nous caractérisions précisément la complexité calculatoire jusqu’ici largement ouverte de trois variantes du problème de validité. En nous basant sur nos résultats, nous développons des techniques pour vérifier la validité en pratique, à l’aide de relaxations d’accessibilité dans les réseaux de Petri. Enfin, nous introduisons le nouveau modèle d’automates continus à un compteur. Ce modèle est une variante naturelle des automates à un compteur, qui permet de raisonner de manière hybride en combinant des éléments continus et discrets. Nous caractérisons la complexité exacte du problème d’accessibilité dans plusieurs variantes du modèle

Modular modelling of signalling pathways and their crosstalk

Signalling pathways are well-known abstractions that explain the mechanisms whereby cells respond to signals. Collections of pathways form networks, and interactions between pathways in a network, known as cross-talk, enables further complex signalling behaviours. While there are several formal modelling approaches for signalling pathways, none make cross-talk explicit; the aim of this paper is to define and categorise cross-talk in a rigorous way. We define a modular approach to pathway and network modelling, based on the module construct in the PRISM modelling language, and a set of generic signalling modules. Five different types of cross-talk are defined according to various biologically meaningful combinations of variable sharing, synchronisation labels and reaction renaming. The approach is illustrated with a case-study analysis of cross-talk between the TGF-β, WNT and MAPK pathways

Modeling synchronous systems in BIP

We present a general approach for modeling synchronous component-based systems. These are systems of synchronous components strongly synchronized by a common action that initiates steps of each component. We propose a general model for synchronous systems. Steps are described by acyclic Petri nets equipped with data and priorities. Petri nets are used to model concurrent flow of computation. Priorities are instrumental for enforcing run-to-completion in the execution of a step. We study a class of well-triggered synchronous systems which are by construction deadlock-free and their computation within a step is confluent. For this class, the behavior of components is modeled by modal flow graphs. These are acyclic graphs representing three different types of dependency between two events p and q: strong dependency (p must follow q), weak dependency (p may follow q), conditional dependency (if both p and q occur then p must follow q). We propose a translation of Lustre into well-triggered synchronous systems. This translation is modular and exhibits not only data-flow connections between nodes but also their synchronization by using clocks. Copyright 2009 ACM

Branch-well-structured transition systems and extensions

We propose a relaxation to the definition of well-structured transition systems (\WSTS) while retaining the decidability of boundedness and non-termination. In this class, the well-quasi-ordered (wqo) condition is relaxed such that it is applicable only between states that are reachable one from another. Furthermore, the monotony condition is relaxed in the same way. While this retains the decidability of non-termination and boundedness, it appears that the coverability problem is undecidable. To this end, we define a new notion of monotony, called cover-monotony, which is strictly more general than the usual monotony and still allows us to decide a restricted form of the coverability problem