Investigation into Indexing XML Data Techniques

The rapid development of XML technology improves the WWW, since the XML data has many advantages and has become a common technology for transferring data cross the internet. Therefore, the objective of this research is to investigate and study the XML indexing techniques in terms of their structures. The main goal of this investigation is to identify the main limitations of these techniques and any other open issues. Furthermore, this research considers most common XML indexing techniques and performs a comparison between them. Subsequently, this work makes an argument to find out these limitations. To conclude, the main problem of all the XML indexing techniques is the trade-off between the size and the efficiency of the indexes. So, all the indexes become large in order to perform well, and none of them is suitable for all users’ requirements. However, each one of these techniques has some advantages in somehow

Prospects and limitations of full-text index structures in genome analysis

The combination of incessant advances in sequencing technology producing large amounts of data and innovative bioinformatics approaches, designed to cope with this data flood, has led to new interesting results in the life sciences. Given the magnitude of sequence data to be processed, many bioinformatics tools rely on efficient solutions to a variety of complex string problems. These solutions include fast heuristic algorithms and advanced data structures, generally referred to as index structures. Although the importance of index structures is generally known to the bioinformatics community, the design and potency of these data structures, as well as their properties and limitations, are less understood. Moreover, the last decade has seen a boom in the number of variant index structures featuring complex and diverse memory-time trade-offs. This article brings a comprehensive state-of-the-art overview of the most popular index structures and their recently developed variants. Their features, interrelationships, the trade-offs they impose, but also their practical limitations, are explained and compared

Fast, linked, and open – the future of taxonomic publishing for plants: launching the journal PhytoKeys

The paper describes the focus, scope and the rationale of PhytoKeys, a newly established, peer-reviewed, open-access journal in plant systematics. PhytoKeys is launched to respond to four main challenges of our time: (1) Appearance of electronic publications as amendments or even alternatives to paper publications; (2) Open Access (OA) as a new publishing model; (3) Linkage of electronic registers, indices and aggregators that summarize information on biological species through taxonomic names or their persistent identifiers (Globally Unique Identifiers or GUIDs; currently Life Science Identifiers or LSIDs); (4) Web 2.0 technologies that permit the semantic markup of, and semantic enhancements to, published biological texts. The journal will pursue cutting-edge technologies in publication and dissemination of biodiversity information while strictly following the requirements of the current International Code of Botanical Nomenclature (ICBN)

News on demand considered useless: An explorative assessment of database news publication features

this paper describes the video scenario, details the interviews and their results, answers the main questions tentatively and finaLLy identifies what appears to be promising research direction

Software Grand Exposure: SGX Cache Attacks Are Practical

Side-channel information leakage is a known limitation of SGX. Researchers have demonstrated that secret-dependent information can be extracted from enclave execution through page-fault access patterns. Consequently, various recent research efforts are actively seeking countermeasures to SGX side-channel attacks. It is widely assumed that SGX may be vulnerable to other side channels, such as cache access pattern monitoring, as well. However, prior to our work, the practicality and the extent of such information leakage was not studied. In this paper we demonstrate that cache-based attacks are indeed a serious threat to the confidentiality of SGX-protected programs. Our goal was to design an attack that is hard to mitigate using known defenses, and therefore we mount our attack without interrupting enclave execution. This approach has major technical challenges, since the existing cache monitoring techniques experience significant noise if the victim process is not interrupted. We designed and implemented novel attack techniques to reduce this noise by leveraging the capabilities of the privileged adversary. Our attacks are able to recover confidential information from SGX enclaves, which we illustrate in two example cases: extraction of an entire RSA-2048 key during RSA decryption, and detection of specific human genome sequences during genomic indexing. We show that our attacks are more effective than previous cache attacks and harder to mitigate than previous SGX side-channel attacks

A Compression Technique Exploiting References for Data Synchronization Services

Department of Computer Science and EngineeringIn a variety of network applications, there exists significant amount of shared data between two end hosts. Examples include data synchronization services that replicate data from one node to another. Given that shared data may have high correlation with new data to transmit, we question how such shared data can be best utilized to improve the efficiency of data transmission. To answer this, we develop an encoding technique, SyncCoding, that effectively replaces bit sequences of the data to be transmitted with the pointers to their matching bit sequences in the shared data so called references. By doing so, SyncCoding can reduce data traffic, speed up data transmission, and save energy consumption for transmission. Our evaluations of SyncCoding implemented in Linux show that it outperforms existing popular encoding techniques, Brotli, LZMA, Deflate, and Deduplication. The gains of SyncCoding over those techniques in the perspective of data size after compression in a cloud storage scenario are about 12.4%, 20.1%, 29.9%, and 61.2%, and are about 78.3%, 79.6%, 86.1%, and 92.9% in a web browsing scenario, respectively.ope

Storage and Retrieval of Highly Repetitive Sequence Collections

Peer reviewe