Extending OWL-S for the Composition of Web Services Generated With a Legacy Application Wrapper

Despite numerous efforts by various developers, web service composition is still a difficult problem to tackle. Lot of progressive research has been made on the development of suitable standards. These researches help to alleviate and overcome some of the web services composition issues. However, the legacy application wrappers generate nonstandard WSDL which hinder the progress. Indeed, in addition to their lack of semantics, WSDLs have sometimes different shapes because they are adapted to circumvent some technical implementation aspect. In this paper, we propose a method for the semi automatic composition of web services in the context of the NeuroLOG project. In this project the reuse of processing tools relies on a legacy application wrapper called jGASW. The paper describes the extensions to OWL-S in order to introduce and enable the composition of web services generated using the jGASW wrapper and also to implement consistency checks regarding these services.Comment: ICIW 2012, The Seventh International Conference on Internet and Web Applications and Services, Stuttgart : Germany (2012

A Framework for Design and Composition of Semantic Web Services

Semantic Web Services (SWS) are Web Services (WS) whose description is semantically enhanced with markup languages (e.g., OWL-S). This semantic description will enable external agents and programs to discover, compose and invoke SWSs. However, as a previous step to the specification of SWSs in a language, it must be designed at a conceptual level to guarantee its correctness and avoid inconsistencies among its internal components. In this paper, we present a framework for design and (semi) automatic composition of SWSs at a language-independent and knowledge level. This framework is based on a stack of ontologies that (1) describe the different parts of a SWS; and (2) contain a set of axioms that are really design rules to be verified by the ontology instances. Based on these ontologies, design and composition of SWSs can be viewed as the correct instantiation of the ontologies themselves. Once these instances have been created they will be exported to SWS languages such as OWL-S

A Constrained Object Model for Configuration Based Workflow Composition

Automatic or assisted workflow composition is a field of intense research for applications to the world wide web or to business process modeling. Workflow composition is traditionally addressed in various ways, generally via theorem proving techniques. Recent research observed that building a composite workflow bears strong relationships with finite model search, and that some workflow languages can be defined as constrained object metamodels . This lead to consider the viability of applying configuration techniques to this problem, which was proven feasible. Constrained based configuration expects a constrained object model as input. The purpose of this document is to formally specify the constrained object model involved in ongoing experiments and research using the Z specification language.Comment: This is an extended version of the article published at BPM'05, Third International Conference on Business Process Management, Nancy Franc

Bioinformatics service reconciliation by heterogeneous schema transformation

This paper focuses on the problem of bioinformatics service reconciliation in a generic and scalable manner so as to enhance interoperability in a highly evolving field. Using XML as a common representation format, but also supporting existing flat-file representation formats, we propose an approach for the scalable semi-automatic reconciliation of services, possibly invoked from within a scientific workflows tool. Service reconciliation may use the AutoMed heterogeneous data integration system as an intermediary service, or may use AutoMed to produce services that mediate between services. We discuss the application of our approach for the reconciliation of services in an example bioinformatics workflow. The main contribution of this research is an architecture for the scalable reconciliation of bioinformatics services

A Framework for Semi-automated Web Service Composition in Semantic Web

Number of web services available on Internet and its usage are increasing very fast. In many cases, one service is not enough to complete the business requirement; composition of web services is carried out. Autonomous composition of web services to achieve new functionality is generating considerable attention in semantic web domain. Development time and effort for new applications can be reduced with service composition. Various approaches to carry out automated composition of web services are discussed in literature. Web service composition using ontologies is one of the effective approaches. In this paper we demonstrate how the ontology based composition can be made faster for each customer. We propose a framework to provide precomposed web services to fulfil user requirements. We detail how ontology merging can be used for composition which expedites the whole process. We discuss how framework provides customer specific ontology merging and repository. We also elaborate on how merging of ontologies is carried out.Comment: 6 pages, 9 figures; CUBE 2013 International Conferenc

Semi-automatic distribution pattern modeling of web service compositions using semantics

Enterprise systems are frequently built by combining a number of discrete Web services together, a process termed composition. There are a number of architectural configurations or distribution patterns, which express how a composed system is to be deployed. Previously, we presented a Model Driven Architecture using UML 2.0, which took existing service interfaces as its input and generated an executable Web service composition, guided by a distribution pattern model. In this paper, we propose using Web service semantic descriptions in addition to Web service interfaces, to assist in the semi-automatic generation of the distribution pattern model. Web services described using semantic languages, such as OWL-S, can be automatically assessed for compatibility and their input and output messages can be mapped to each other

Automatic annotation of bioinformatics workflows with biomedical ontologies

Legacy scientific workflows, and the services within them, often present scarce and unstructured (i.e. textual) descriptions. This makes it difficult to find, share and reuse them, thus dramatically reducing their value to the community. This paper presents an approach to annotating workflows and their subcomponents with ontology terms, in an attempt to describe these artifacts in a structured way. Despite a dearth of even textual descriptions, we automatically annotated 530 myExperiment bioinformatics-related workflows, including more than 2600 workflow-associated services, with relevant ontological terms. Quantitative evaluation of the Information Content of these terms suggests that, in cases where annotation was possible at all, the annotation quality was comparable to manually curated bioinformatics resources.Comment: 6th International Symposium on Leveraging Applications (ISoLA 2014 conference), 15 pages, 4 figure