Solving Hard Computational Problems Efficiently: Asymptotic Parametric Complexity 3-Coloring Algorithm

Many practical problems in almost all scientific and technological disciplines have been classified as computationally hard (NP-hard or even NP-complete). In life sciences, combinatorial optimization problems frequently arise in molecular biology, e.g., genome sequencing; global alignment of multiple genomes; identifying siblings or discovery of dysregulated pathways.In almost all of these problems, there is the need for proving a hypothesis about certain property of an object that can be present only when it adopts some particular admissible structure (an NP-certificate) or be absent (no admissible structure), however, none of the standard approaches can discard the hypothesis when no solution can be found, since none can provide a proof that there is no admissible structure. This article presents an algorithm that introduces a novel type of solution method to "efficiently" solve the graph 3-coloring problem; an NP-complete problem. The proposed method provides certificates (proofs) in both cases: present or absent, so it is possible to accept or reject the hypothesis on the basis of a rigorous proof. It provides exact solutions and is polynomial-time (i.e., efficient) however parametric. The only requirement is sufficient computational power, which is controlled by the parameter $\alpha\in\mathbb{N}$. Nevertheless, here it is proved that the probability of requiring a value of $\alpha>k$ to obtain a solution for a random graph decreases exponentially: $P(\alpha>k) \leq 2^{-(k+1)}$, making tractable almost all problem instances. Thorough experimental analyses were performed. The algorithm was tested on random graphs, planar graphs and 4-regular planar graphs. The obtained experimental results are in accordance with the theoretical expected results.Comment: Working pape

Finding Optimal Solutions With Neighborly Help

Can we efficiently compute optimal solutions to instances of a hard problem from optimal solutions to neighboring (i.e., locally modified) instances? For example, can we efficiently compute an optimal coloring for a graph from optimal colorings for all one-edge-deleted subgraphs? Studying such questions not only gives detailed insight into the structure of the problem itself, but also into the complexity of related problems; most notably graph theory\u27s core notion of critical graphs (e.g., graphs whose chromatic number decreases under deletion of an arbitrary edge) and the complexity-theoretic notion of minimality problems (also called criticality problems, e.g., recognizing graphs that become 3-colorable when an arbitrary edge is deleted). We focus on two prototypical graph problems, Colorability and Vertex Cover. For example, we show that it is NP-hard to compute an optimal coloring for a graph from optimal colorings for all its one-vertex-deleted subgraphs, and that this remains true even when optimal solutions for all one-edge-deleted subgraphs are given. In contrast, computing an optimal coloring from all (or even just two) one-edge-added supergraphs is in P. We observe that Vertex Cover exhibits a remarkably different behavior, demonstrating the power of our model to delineate problems from each other more precisely on a structural level. Moreover, we provide a number of new complexity results for minimality and criticality problems. For example, we prove that Minimal-3-UnColorability is complete for DP (differences of NP sets), which was previously known only for the more amenable case of deleting vertices rather than edges. For Vertex Cover, we show that recognizing beta-vertex-critical graphs is complete for Theta_2^p (parallel access to NP), obtaining the first completeness result for a criticality problem for this class

Coloring random graphs

We study the graph coloring problem over random graphs of finite average connectivity $c$. Given a number $q$ of available colors, we find that graphs with low connectivity admit almost always a proper coloring whereas graphs with high connectivity are uncolorable. Depending on $q$, we find the precise value of the critical average connectivity $c_q$. Moreover, we show that below $c_q$ there exist a clustering phase $c\in [c_d,c_q]$ in which ground states spontaneously divide into an exponential number of clusters and where the proliferation of metastable states is responsible for the onset of complexity in local search algorithms.Comment: 4 pages, 1 figure, version to app. in PR

Polynomial iterative algorithms for coloring and analyzing random graphs

We study the graph coloring problem over random graphs of finite average connectivity $c$. Given a number $q$ of available colors, we find that graphs with low connectivity admit almost always a proper coloring whereas graphs with high connectivity are uncolorable. Depending on $q$, we find the precise value of the critical average connectivity $c_q$. Moreover, we show that below $c_q$ there exist a clustering phase $c\in [c_d,c_q]$ in which ground states spontaneously divide into an exponential number of clusters. Furthermore, we extended our considerations to the case of single instances showing consistent results. This lead us to propose a new algorithm able to color in polynomial time random graphs in the hard but colorable region, i.e when $c\in [c_d,c_q]$.Comment: 23 pages, 10 eps figure

Determining the expected runtime of an exact graph coloring algorithm

Exact algorithms for graph coloring tend to have high vari- ance in their runtime, posing a signi�cant obstacle to their practical application. The problem could be mitigated by appropriate prediction of the runtime. For this purpose, we devise an algorithm to efficiently compute the expected run-time of an exact graph coloring algorithm as a function of the parameters of the problem instance: the graph's size, edge density, and the number of available colors. Specifically, we investigate the complexity of a typical backtracking algorithm for coloring random graphs with k colors. Using the expected size of the search tree as the measure of complexity, we devise a polynomial-time algorithm for predicting algorithm complexity depending on the parameters of the problem instance. Our method also delivers the expected number of solutions (i.e., number of valid colorings) of the given problem instance, which can help us decide whether the given problem instance is likely to be feasible or not. Based on our algorithm, we also show in accordance with previous results that increasing the number of vertices of the graph does not increase the complexity beyond some com- plexity limit. However, this complexity limit grows rapidly when the number of colors increases

Complexity of Stability

Graph parameters such as the clique number, the chromatic number, and the independence number are central in many areas, ranging from computer networks to linguistics to computational neuroscience to social networks. In particular, the chromatic number of a graph (i.e., the smallest number of colors needed to color all vertices such that no two adjacent vertices are of the same color) can be applied in solving practical tasks as diverse as pattern matching, scheduling jobs to machines, allocating registers in compiler optimization, and even solving Sudoku puzzles. Typically, however, the underlying graphs are subject to (often minor) changes. To make these applications of graph parameters robust, it is important to know which graphs are stable for them in the sense that adding or deleting single edges or vertices does not change them. We initiate the study of stability of graphs for such parameters in terms of their computational complexity. We show that, for various central graph parameters, the problem of determining whether or not a given graph is stable is complete for ???, a well-known complexity class in the second level of the polynomial hierarchy, which is also known as "parallel access to NP.

Random Graph Coloring - a Statistical Physics Approach

The problem of vertex coloring in random graphs is studied using methods of statistical physics and probability. Our analytical results are compared to those obtained by exact enumeration and Monte-Carlo simulations. We critically discuss the merits and shortcomings of the various methods, and interpret the results obtained. We present an exact analytical expression for the 2-coloring problem as well as general replica symmetric approximated solutions for the thermodynamics of the graph coloring problem with p colors and K-body edges.Comment: 17 pages, 9 figure