Complexitor: an Educational Tool for Learning Algorithm TIME Complexity in Practical Manner

Based on the informal survey, learning algorithm time complexity in a theoretical manner can be rather difficult to understand. Therefore, this research proposed Complexitor, an educational tool for learning algorithm time complexity in a practical manner. Students could learn how to determine algorithm time complexity through the actual execution of algorithm implementation. They were only required to provide algorithm implementation (i.e. source code written on a particularprogramming language) and test cases to learn time complexity. After input was given, Complexitor generated execution sequence based on test cases and determine its time complexity through Pearson correlation. An algorithm time complexity with the highest correlation value toward execution sequence was assigned as its result. Based on the evaluation, it can be concluded this mechanism is quite effective for determining time complexity as long as the distribution of given input set is balanced

A methodology for producing reliable software, volume 1

An investigation into the areas having an impact on producing reliable software including automated verification tools, software modeling, testing techniques, structured programming, and management techniques is presented. This final report contains the results of this investigation, analysis of each technique, and the definition of a methodology for producing reliable software

Formal Analysis of Concurrent Programs

In this thesis, extensions of Kleene algebras are used to develop algebras for rely-guarantee style reasoning about concurrent programs. In addition to these algebras, detailed denotational models are implemented in the interactive theorem prover Isabelle/HOL. Formal soundness proofs link the algebras to their models. This follows a general algebraic approach for developing correct by construction verification tools within Isabelle. In this approach, algebras provide inference rules and abstract principles for reasoning about the control flow of programs, while the concrete models provide laws for reasoning about data flow. This yields a rapid, lightweight approach for the construction of verification and refinement tools. These tools are used to construct a popular example from the literature, via refinement, within the context of a general-purpose interactive theorem proving environment

Three Dimensional Software Modelling

Traditionally, diagrams used in software systems modelling have been two dimensional (2D). This is probably because graphical notations, such as those used in object-oriented and structured systems modelling, draw upon the topological graph metaphor, which, at its basic form, receives little benefit from three dimensional (3D) rendering. This paper presents a series of 3D graphical notations demonstrating effective use of the third dimension in modelling. This is done by e.g., connecting several graphs together, or in using the Z co-ordinate to show special kinds of edges. Each notation combines several familiar 2D diagrams, which can be reproduced from 2D projections of the 3D model. 3D models are useful even in the absence of a powerful graphical workstation: even 2D stereoscopic projections can expose more information than a plain planar diagram

Advanced software techniques for space shuttle data management systems Final report

Airborne/spaceborn computer design and techniques for space shuttle data management system

Object-oriented construction of a multigrid electronic-structure code with Fortran 90

We describe the object-oriented implementation of a higher-order finite-difference density-functional code in Fortran 90. Object-oriented models of grid and related objects are constructed and employed for the implementation of an efficient one-way multigrid method we have recently proposed for the density-functional electronic-structure calculations. Detailed analysis of performance and strategy of the one-way multigrid scheme will be presented.Comment: 24 pages, 6 figures, to appear in Comput. Phys. Com

Small scale software engineering

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel University.In computing, the Software Crisis has arisen because software projects cannot meet their planned timescales, functional capabilities, reliability levels and budgets. This thesis reduces the general problem down to the Small Scale Software Engineering goal of improving the quality and tractability of the designs of individual programs. It is demonstrated that the application of eight abstractions (set, sequence, hierarchy, h-reduction, integration, induction, enumeration, generation) can lead to a reduction in the size and complexity of and an increase in the quality of software designs when expressed via Dimensional Design, a new representational technique which uses the three spatial dimensions to represent set, sequence and hierarchy, whilst special symbols and axioms encode the other abstractions. Dimensional Designs are trees of symbols whose edges perceptually encode the relationships between the nodal symbols. They are easy to draw and manipulate both manually and mechanically. Details are given of real software projects already undertaken using Dimensional Design. Its tool kit, DD/ROOTS, produces high quality, machine drawn, detailed design documentation plus novel quality control information. A run time monitor records and animates execution, measures CPU time and takes snapshots etc; all these results are represented according to Dimensional Design principles to maintain conceptual integrity with the design. These techniques are illustrated by the development of a non-trivial example program. Dimensional Design is axiomatised, compared to existing techniques and evaluated against the stated problem. It has advantages over existing techniques, mainly its clarity of expression and ease of manipulation of individual abstractions due to its graphical basis

An Introduction to Programming for Bioscientists: A Python-based Primer

Computing has revolutionized the biological sciences over the past several decades, such that virtually all contemporary research in the biosciences utilizes computer programs. The computational advances have come on many fronts, spurred by fundamental developments in hardware, software, and algorithms. These advances have influenced, and even engendered, a phenomenal array of bioscience fields, including molecular evolution and bioinformatics; genome-, proteome-, transcriptome- and metabolome-wide experimental studies; structural genomics; and atomistic simulations of cellular-scale molecular assemblies as large as ribosomes and intact viruses. In short, much of post-genomic biology is increasingly becoming a form of computational biology. The ability to design and write computer programs is among the most indispensable skills that a modern researcher can cultivate. Python has become a popular programming language in the biosciences, largely because (i) its straightforward semantics and clean syntax make it a readily accessible first language; (ii) it is expressive and well-suited to object-oriented programming, as well as other modern paradigms; and (iii) the many available libraries and third-party toolkits extend the functionality of the core language into virtually every biological domain (sequence and structure analyses, phylogenomics, workflow management systems, etc.). This primer offers a basic introduction to coding, via Python, and it includes concrete examples and exercises to illustrate the language's usage and capabilities; the main text culminates with a final project in structural bioinformatics. A suite of Supplemental Chapters is also provided. Starting with basic concepts, such as that of a 'variable', the Chapters methodically advance the reader to the point of writing a graphical user interface to compute the Hamming distance between two DNA sequences.Comment: 65 pages total, including 45 pages text, 3 figures, 4 tables, numerous exercises, and 19 pages of Supporting Information; currently in press at PLOS Computational Biolog

Proofs of partial correctness for attribute grammars with applications to recursive procedures and logic programming

AbstractAn extension of the inductive assertion method allowing one to prove the partial correctness of an attribute grammar w.r.t. a specification is presented. It is complete in an abstract sense. It is also shown that the semantics of systems of recursive imperative procedures or of recursive applicative procedures computed with call-by-value or call-by-name can be expressed by an attribute grammar associating attributes with the nodes of the so-called trees of calls. Hence the proof methods for the partial correctness of attribute grammars can be applied to these recursive procedures. We show also how the proof method can be applied in logic programming