Named Entity Recognition and Disambiguation using Linked Data and Graph-based Centrality Scoring

Hakimov S, Oto SA, Dogdu E. Named Entity Recognition and Disambiguation using Linked Data and Graph-based Centrality Scoring. In: SIGMOD, SWIM 2012. 2012: 4.Named Entity Recognition (NER) is a subtask of informationextraction and aims to identify atomic entities in text that fall intopredefined categories such as person, location, organization, etc.Recent efforts in NER try to extract entities and link them tolinked data entities. Linked data is a term used for data resourcesthat are created using semantic web standards such as DBpedia.There are a number of online tools that try to identify namedentities in text and link them to linked data resources. Althoughone can use these tools via their APIs and web interfaces, they usedifferent data resources and different techniques to identify namedentities and not all of them reveal this information. One of themajor tasks in NER is disambiguation that is identifying the rightentity among a number of entities with the same names; forexample “apple” standing for both “Apple, Inc.” the company andthe fruit. We developed a similar tool called NERSO, short forNamed Entity Recognition Using Semantic Open Data, toautomatically extract named entities, disambiguating and linkingthem to DBpedia entities. Our disambiguation method is based onconstructing a graph of linked data entities and scoring them usinga graph-based centrality algorithm. We evaluate our system bycomparing its performance with two publicly available NER tools.The results show that NERSO performs better

Web Person Name Disambiguation Using Social Links and Enriched Profile Information

In this article, we investigate the problem of cross-document person name disambiguation, which aimed at resolving ambiguities between person names and clustering web documents according to their association to different persons sharing the same name. The majority of previous work often formulated cross-document name disambiguation as a clustering problem. These methods employed various syntactic and semantic features either from the local corpus or distant knowledge bases to compute similarities between entities and group similar entities. However, these approaches show limitations regarding robustness and performance. We propose an unsupervised, graph-based name disambiguation approach to improve the performance and robustness of the state-of-the-art. Our approach exploits both local information extracted from the given corpus, and global information obtained from distant knowledge bases. We show the effectiveness of our approach by testing it on standard WePS datasets. The experimental results are encouraging and show that our proposed method outperforms several baseline methods and also its counterparts. The experiments show that our approach not only improves the performances, but also increases the robustness of name disambiguation

Natural Language Processing for Drug Discovery Knowledge Graphs: promises and pitfalls

Building and analysing knowledge graphs (KGs) to aid drug discovery is a topical area of research. A salient feature of KGs is their ability to combine many heterogeneous data sources in a format that facilitates discovering connections. The utility of KGs has been exemplified in areas such as drug repurposing, with insights made through manual exploration and modelling of the data. In this article, we discuss promises and pitfalls of using natural language processing (NLP) to mine unstructured text typically from scientific literature as a data source for KGs. This draws on our experience of initially parsing structured data sources such as ChEMBL as the basis for data within a KG, and then enriching or expanding upon them using NLP. The fundamental promise of NLP for KGs is the automated extraction of data from millions of documents a task practically impossible to do via human curation alone. However, there are many potential pitfalls in NLP-KG pipelines such as incorrect named entity recognition and ontology linking all of which could ultimately lead to erroneous inferences and conclusions.Comment: 17 pages, 7 figure

Entity-Oriented Search

This open access book covers all facets of entity-oriented search—where “search” can be interpreted in the broadest sense of information access—from a unified point of view, and provides a coherent and comprehensive overview of the state of the art. It represents the first synthesis of research in this broad and rapidly developing area. Selected topics are discussed in-depth, the goal being to establish fundamental techniques and methods as a basis for future research and development. Additional topics are treated at a survey level only, containing numerous pointers to the relevant literature. A roadmap for future research, based on open issues and challenges identified along the way, rounds out the book. The book is divided into three main parts, sandwiched between introductory and concluding chapters. The first two chapters introduce readers to the basic concepts, provide an overview of entity-oriented search tasks, and present the various types and sources of data that will be used throughout the book. Part I deals with the core task of entity ranking: given a textual query, possibly enriched with additional elements or structural hints, return a ranked list of entities. This core task is examined in a number of different variants, using both structured and unstructured data collections, and numerous query formulations. In turn, Part II is devoted to the role of entities in bridging unstructured and structured data. Part III explores how entities can enable search engines to understand the concepts, meaning, and intent behind the query that the user enters into the search box, and how they can provide rich and focused responses (as opposed to merely a list of documents)—a process known as semantic search. The final chapter concludes the book by discussing the limitations of current approaches, and suggesting directions for future research. Researchers and graduate students are the primary target audience of this book. A general background in information retrieval is sufficient to follow the material, including an understanding of basic probability and statistics concepts as well as a basic knowledge of machine learning concepts and supervised learning algorithms

Unsupervised entity linking using graph-based semantic similarity

Nowadays, the human textual data constitutes a great proportion of the shared information resources such as World Wide Web (WWW). Social networks, news and learning resources as well as Knowledge Bases (KBs) are just the small examples that widely contain the textual data which is used by both human and machine readers. The nature of human languages is highly ambiguous, means that a short portion of a textual context (such as words or phrases) can semantically be interpreted in different ways. A language processor should detect the best interpretation depending on the context in which each word or phrase appears. In case of human readers, the brain is quite proficient in interfering textual data. Human language developed in a way that reflects the innate ability provided by the brain’s neural networks. However, there still exist the moments that the text disambiguation task would remain a hard challenge for the human readers. In case of machine readers, it has been a long-term challenge to develop the ability to do natural language processing and machine learning. Different interpretation can change the broad range of topics and targets. The different in interpretation can cause serious impacts when it is used in critical domains that need high precision. Thus, the correctly inferring the ambiguous words would be highly crucial. To tackle it, two tasks have been developed: Word Sense Disambiguation (WSD) to infer the sense (i.e. meaning) of ambiguous words, when the word has multiple meanings, and Entity Linking (EL) (also called, Named Entity Disambiguation–NED, Named Entity Recognition and Disambiguation–NERD, or Named Entity Normalization–NEN) which is used to explore the correct reference of Named Entity (NE) mentions occurring in documents. The solution to these problems impacts other computer-related writing, such as discourse, improving relevance of search engines, anaphora resolution, coherence, and inference. This document summarizes the works towards developing an unsupervised Entity Linking (EL) system using graph-based semantic similarity aiming to disambiguate Named Entity (NE) mentions occurring in a target document. The EL task is highly challenging since each entity can usually be referred to by several NE mentions (synonymy). In addition, a NE mention may be used to indicate distinct entities (polysemy). Thus, much effort is necessary to tackle these challenges. Our EL system disambiguates the NE mentions in several steps. For each step, we have proposed, implemented, and evaluated several approaches. We evaluated our EL system in TAC-KBP4 English EL evaluation framework in which the system input consists of a set of queries, each containing a query name (target NE mention) along with start and end offsets of that mention in the target document. The output is either a NE entry id in a reference Knowledge Base (KB) or a Not-in-KB (NIL) id in the case that system could not find any appropriate entry for that query. At the end, we have analyzed our result in different aspects. To disambiguate query name we apply a graph-based semantic similarity approach to extract the network of the semantic knowledge existing in the content of target document.Este documento es un resumen del trabajo realizado para la construccion de un sistema de Entity Linking (EL) destinado a desambiguar menciones de Entidades Nombradas (Named Entities, NE) que aparecen en un documento de referencia. La tarea de EL presenta una gran dificultad ya que cada entidad puede ser mencionada de varias maneras (sinonimia). Ademas cada mencion puede referirse a mas de una entidad (polisemia). Asi pues, se debe realizar un gran esfuerzo para hacer frente a estos retos. Nuestro sistema de EL lleva a cabo la desambiguacion de las menciones de NE en varias etapas. Para cada etapa hemos propuesto, implementado y evaluado varias aproximaciones. Hemos evaluado nuestro sistema de EL en el marco del TAC-KBP English EL evaluation framework. En este marco la evaluacion se realiza a partir de una entrada que consiste en un conjunto de consultas cada una de las cuales consta de un nombre (query name) que corresponde a una mencion objetivo cuya posicion en un documento de referencia se indica. La salida debe indicar a que entidad en una base de conocimiento (Knowledge Base, KB) corresponde la mencion. En caso de no existir un referente apropiado la respuesta sera Not-in-KB (NIL). La tesis concluye con un analisis pormenorizado de los resultados obtenidos en la evaluacion.Postprint (published version

Entity Linking meets Word Sense Disambiguation: A Unified Approach

Entity Linking (EL) and Word Sense Disambiguation (WSD) both address the lexical ambiguity of language. But while the two tasks are pretty similar, they differ in a fundamental respect: in EL the textual mention can be linked to a named entity which may or may not contain the exact mention, while in WSD there is a perfect match between the word form (better, its lemma) and a suitable word sense. In this paper we present Babelfy, a unified graph-based approach to EL and WSD based on a loose identification of candidate meanings coupled with a densest subgraph heuristic which selects high-coherence semantic interpretations. Our experiments show state-ofthe-art performances on both tasks on 6 different datasets, including a multilingual setting. Babelfy is online at http://babelfy.orgEntity Linking (EL) and Word Sense Disambiguation (WSD) both address the lexical ambiguity of language. But while the two tasks are pretty similar, they differ in a fundamental respect: in EL the textual mention can be linked to a named entity which may or may not contain the exact mention, while in WSD there is a perfect match between the word form (better, its lemma) and a suitable word sense. In this paper we present Babelfy, a unified graph-based approach to EL and WSD based on a loose identification of candidate meanings coupled with a densest subgraph heuristic which selects high-coherence semantic interpretations. Our experiments show state-ofthe-art performances on both tasks on 6 different datasets, including a multilingual setting. Babelfy is online at http://babelfy.or

A Qualitative Literature Review on Linkage Techniques for Data Integration

The data linkage techniques ”entity linking” and ”record linkage” get rising attention as they enable the integration of multiple data sources for data, web, and text mining approaches. This has resulted in the development of numerous algorithms and systems for these techniques in recent years. The goal of this publication is to provide an overview of these numerous data linkage techniques. Most papers deal with record linkage and structured data. Processing unstructured data through entity linking is rising attention with the trend Big Data. Currently, deep learning algorithms are being explored for both linkage techniques. Most publications focus their research on a single process step or the entire process of ”entity linking” or ”record linkage”. However, the papers have the limitation that the used approaches and techniques have always been optimized for only a few data sources

Knowledge-Based Techniques for Scholarly Data Access: Towards Automatic Curation

Accessing up-to-date and quality scientific literature is a critical preliminary step in any research activity. Identifying relevant scholarly literature for the extents of a given task or application is, however a complex and time consuming activity. Despite the large number of tools developed over the years to support scholars in their literature surveying activity, such as Google Scholar, Microsoft Academic search, and others, the best way to access quality papers remains asking a domain expert who is actively involved in the field and knows research trends and directions. State of the art systems, in fact, either do not allow exploratory search activity, such as identifying the active research directions within a given topic, or do not offer proactive features, such as content recommendation, which are both critical to researchers. To overcome these limitations, we strongly advocate a paradigm shift in the development of scholarly data access tools: moving from traditional information retrieval and filtering tools towards automated agents able to make sense of the textual content of published papers and therefore monitor the state of the art. Building such a system is however a complex task that implies tackling non trivial problems in the fields of Natural Language Processing, Big Data Analysis, User Modelling, and Information Filtering. In this work, we introduce the concept of Automatic Curator System and present its fundamental components.openDottorato di ricerca in InformaticaopenDe Nart, Dari