Non-Standard Imaging Techniques

The first objective of the thesis is to investigate the problem of reconstructing a small-scale object (a few millimeters or smaller) in 3D. In Chapter 3, we show how this problem can be solved effectively by a new multifocus multiview 3D reconstruction procedure which includes a new Fixed-Lens multifocus image capture and a calibrated image registration technique using analytic homography transformation. The experimental results using the real and synthetic images demonstrate the effectiveness of the proposed solutions by showing that both the fixed-lens image capture and multifocus stacking with calibrated image alignment significantly reduce the errors in the camera poses and produce more complete 3D reconstructed models as compared with those by the conventional moving lens image capture and multifocus stacking. The second objective of the thesis is modelling the dual-pixel (DP) camera. In Chapter 4, to understand the potential of the DP sensor for computer vision applications, we study the formation of the DP pair which links the blur and the depth information. A mathematical DP model is proposed which can benefit depth estimation by the blur. These explorations motivate us to propose an end-to-end DDDNet (DP-based Depth and Deblur Network) to jointly estimate the depth and restore the image . Moreover, we define a reblur loss, which reflects the relationship of the DP image formation process with depth information, to regularize our depth estimate in training. To meet the requirement of a large amount of data for learning, we propose the first DP image simulator which allows us to create datasets with DP pairs from any existing RGBD dataset. As a side contribution, we collect a real dataset for further research. Extensive experimental evaluation on both synthetic and real datasets shows that our approach achieves competitive performance compared to state-of-the-art approaches. Another (third) objective of this thesis is to tackle the multifocus image fusion problem, particularly for long multifocus image sequences. Multifocus image stacking/fusion produces an in-focus image of a scene from a number of partially focused images of that scene in order to extend the depth of field. One of the limitations of the current state of the art multifocus fusion methods is not considering image registration/alignment before fusion. Consequently, fusing unregistered multifocus images produces an in-focus image containing misalignment artefacts. In Chapter 5, we propose image registration by projective transformation before fusion to remove the misalignment artefacts. We also propose a method based on 3D deconvolution to retrieve the in-focus image by formulating the multifocus image fusion problem as a 3D deconvolution problem. The proposed method achieves superior performance compared to the state of the art methods. It is also shown that, the proposed projective transformation for image registration can improve the quality of the fused images. Moreover, we implement a multifocus simulator to generate synthetic multifocus data from any RGB-D dataset. The fourth objective of this thesis is to explore new ways to detect the polarization state of light. To achieve the objective, in Chapter 6, we investigate a new optical filter namely optical rotation filter for detecting the polarization state with a fewer number of images. The proposed method can estimate polarization state using two images, one with the filter and another without. The accuracy of estimating the polarization parameters using the proposed method is almost similar to that of the existing state of the art method. In addition, the feasibility of detecting the polarization state using only one RGB image captured with the optical rotation filter is also demonstrated by estimating the image without the filter from the image with the filter using a generative adversarial network

Point-and-Shoot All-in-Focus Photo Synthesis from Smartphone Camera Pair

All-in-Focus (AIF) photography is expected to be a commercial selling point for modern smartphones. Standard AIF synthesis requires manual, time-consuming operations such as focal stack compositing, which is unfriendly to ordinary people. To achieve point-and-shoot AIF photography with a smartphone, we expect that an AIF photo can be generated from one shot of the scene, instead of from multiple photos captured by the same camera. Benefiting from the multi-camera module in modern smartphones, we introduce a new task of AIF synthesis from main (wide) and ultra-wide cameras. The goal is to recover sharp details from defocused regions in the main-camera photo with the help of the ultra-wide-camera one. The camera setting poses new challenges such as parallax-induced occlusions and inconsistent color between cameras. To overcome the challenges, we introduce a predict-and-refine network to mitigate occlusions and propose dynamic frequency-domain alignment for color correction. To enable effective training and evaluation, we also build an AIF dataset with 2686 unique scenes. Each scene includes two photos captured by the main camera, one photo captured by the ultrawide camera, and a synthesized AIF photo. Results show that our solution, termed EasyAIF, can produce high-quality AIF photos and outperforms strong baselines quantitatively and qualitatively. For the first time, we demonstrate point-and-shoot AIF photo synthesis successfully from main and ultra-wide cameras.Comment: Early Access by IEEE Transactions on Circuits and Systems for Video Technology 202

Multiscale image denoising using goodness-of-fit test based on EDF statistics.

Two novel image denoising algorithms are proposed which employ goodness of fit (GoF) test at multiple image scales. Proposed methods operate by employing the GoF tests locally on the wavelet coefficients of a noisy image obtained via discrete wavelet transform (DWT) and the dual tree complex wavelet transform (DT-CWT) respectively. We next formulate image denoising as a binary hypothesis testing problem with the null hypothesis indicating the presence of noise and the alternate hypothesis representing the presence of desired signal only. The decision that a given wavelet coefficient corresponds to the null hypothesis or the alternate hypothesis involves the GoF testing based on empirical distribution function (EDF), applied locally on the noisy wavelet coefficients. The performance of the proposed methods is validated by comparing them against the state of the art image denoising methods

From Calibration to Large-Scale Structure from Motion with Light Fields

Classic pinhole cameras project the multi-dimensional information of the light flowing through a scene onto a single 2D snapshot. This projection limits the information that can be reconstructed from the 2D acquisition. Plenoptic (or light field) cameras, on the other hand, capture a 4D slice of the plenoptic function, termed the “light field”. These cameras provide both spatial and angular information on the light flowing through a scene; multiple views are captured in a single photographic exposure facilitating various applications. This thesis is concerned with the modelling of light field (or plenoptic) cameras and the development of structure from motion pipelines using such cameras. Specifically, we develop a geometric model for a multi-focus plenoptic camera, followed by a complete pipeline for the calibration of the suggested model. Given a calibrated light field camera, we then remap the captured light field to a grid of pinhole images. We use these images to obtain metric 3D reconstruction through a novel framework for structure from motion with light fields. Finally, we suggest a linear and efficient approach for absolute pose estimation for light fields

Modeling and applications of the focus cue in conventional digital cameras

El enfoque en cámaras digitales juega un papel fundamental tanto en la calidad de la imagen como en la percepción del entorno. Esta tesis estudia el enfoque en cámaras digitales convencionales, tales como cámaras de móviles, fotográficas, webcams y similares. Una revisión rigurosa de los conceptos teóricos detras del enfoque en cámaras convencionales muestra que, a pasar de su utilidad, el modelo clásico del thin lens presenta muchas limitaciones para aplicación en diferentes problemas relacionados con el foco. En esta tesis, el focus profile es propuesto como una alternativa a conceptos clásicos como la profundidad de campo. Los nuevos conceptos introducidos en esta tesis son aplicados a diferentes problemas relacionados con el foco, tales como la adquisición eficiente de imágenes, estimación de profundidad, integración de elementos perceptuales y fusión de imágenes. Los resultados experimentales muestran la aplicación exitosa de los modelos propuestos.The focus of digital cameras plays a fundamental role in both the quality of the acquired images and the perception of the imaged scene. This thesis studies the focus cue in conventional cameras with focus control, such as cellphone cameras, photography cameras, webcams and the like. A deep review of the theoretical concepts behind focus in conventional cameras reveals that, despite its usefulness, the widely known thin lens model has several limitations for solving different focus-related problems in computer vision. In order to overcome these limitations, the focus profile model is introduced as an alternative to classic concepts, such as the near and far limits of the depth-of-field. The new concepts introduced in this dissertation are exploited for solving diverse focus-related problems, such as efficient image capture, depth estimation, visual cue integration and image fusion. The results obtained through an exhaustive experimental validation demonstrate the applicability of the proposed models

Efficient and Accurate Disparity Estimation from MLA-Based Plenoptic Cameras

This manuscript focuses on the processing images from microlens-array based plenoptic cameras. These cameras enable the capturing of the light field in a single shot, recording a greater amount of information with respect to conventional cameras, allowing to develop a whole new set of applications. However, the enhanced information introduces additional challenges and results in higher computational effort. For one, the image is composed of thousand of micro-lens images, making it an unusual case for standard image processing algorithms. Secondly, the disparity information has to be estimated from those micro-images to create a conventional image and a three-dimensional representation. Therefore, the work in thesis is devoted to analyse and propose methodologies to deal with plenoptic images. A full framework for plenoptic cameras has been built, including the contributions described in this thesis. A blur-aware calibration method to model a plenoptic camera, an optimization method to accurately select the best microlenses combination, an overview of the different types of plenoptic cameras and their representation. Datasets consisting of both real and synthetic images have been used to create a benchmark for different disparity estimation algorithm and to inspect the behaviour of disparity under different compression rates. A robust depth estimation approach has been developed for light field microscopy and image of biological samples

A Better Looking Brain: Image Pre-Processing Approaches for fMRI Data

Researchers in the field of functional neuroimaging have faced a long standing problem in pre-processing low spatial resolution data without losing meaningful details within. Commonly, the brain function is recorded by a technique known as echo-planar imaging that represents the measure of blood flow (BOLD signal) through a particular location in the brain as an array of intensity values changing over time. This approach to record a movie of blood flow in the brain is known as fMRI. The neural activity is then studied from the temporal correlation patterns existing within the fMRI time series. However, the resulting images are noisy and contain low spatial detail, thus making it imperative to pre-process them appropriately to derive meaningful activation patterns. Two of the several standard preprocessing steps employed just before the analysis stage are denoising and normalization. Fundamentally, it is difficult to perfectly remove noise from an image without making assumptions about signal and noise distributions. A convenient and commonly used alternative is to smooth the image with a Gaussian filter, but this method suffers from various obvious drawbacks, primarily loss of spatial detail. A greater challenge arises when we attempt to derive average activation patterns from fMRI images acquired from a group of individuals. The brain of one individual differs from others in a structural sense as well as in a functional sense. Commonly, the inter-individual differences in anatomical structures are compensated for by co-registering each subject\u27s data to a common normalization space, known as spatial normalization. However, there are no existing methods to compensate for the differences in functional organization of the brain. This work presents first steps towards data-driven robust algorithms for fMRI image denoising and multi-subject image normalization by utilizing inherent information within fMRI data. In addition, a new validation approach based on spatial shape of the activation regions is presented to quantify the effects of preprocessing and also as a tool to record the differences in activation patterns between individual subjects or within two groups such as healthy controls and patients with mental illness. Qualititative and quantitative results of the proposed framework compare favorably against existing and widely used model-driven approaches such as Gaussian smoothing and structure-based spatial normalization. This work is intended to provide neuroscience researchers tools to derive more meaningful activation patterns to accurately identify imaging biomarkers for various neurodevelopmental diseases and also maximize the specificity of a diagnosis

Quantitative analysis of microscopy

Particle tracking is an essential tool for the study of dynamics of biological processes. The dynamics of these processes happens in three-dimensional (3D) space as the biological structures themselves are 3D. The focus of this thesis is on the development of single particle tracking methods for analysis of the dynamics of biological processes through the use of image processing techniques. Firstly, introduced is a novel particle tracking method that works with two-dimensional (2D) image data. This method uses the theory of Haar-like features for particle detection and trajectory linking is achieved using a combination of three Kalman filters within an interacting multiple models framework. The trajectory linking process utilises an extended state space variable which better describe the morphology and intensity profiles of the particles under investigation at their current position. This tracking method is validated using both 2D synthetically generated images as well as 2D experimentally collected images. It is shown that this method outperforms 14 other stateof-the-art methods. Next this method is used to analyse the dynamics of fluorescently labelled particles using a live-cell fluorescence microscopy technique, specifically a variant of the super-resolution (SR) method PALM, spt-PALM. From this application, conclusions about the organisation of the proteins under investigation at the cell membrane are drawn. Introduced next is a second particle tracking method which is highly efficient and capable of working with both 2D and 3D image data. This method uses a novel Haar-inspired feature for particle detection, drawing inspiration from the type of particles to be detected which are typically circular in 2D space and spherical in 3D image space. Trajectory linking in this method utilises a global nearest neighbour methodology incorporating both motion models to describe the motion of the particles under investigation and a further extended state space variable describing many more aspects of the particles to be linked. This method is validated using a variety of both 2D and 3D synthetic image data. The methods performance is compared with 14 other state-of-the-art methods showing it to be one of the best overall performing methods. Finally, analysis tools to study a SR image restoration method developed by our research group, referred to as Translation Microscopy (TRAM) are investigated [1]. TRAM can be implemented on any standardised microscope and deliver an improvement in resolution of up to 7-fold. However, the results from TRAM and other SR imaging methods require specialised tools to validate and analyse them. Tools have been developed to validate that TRAM performs correctly using a specially designed ground truth. Furthermore, through analysis of results on a biological sample corroborate other published results based on the size of biological structures, showing again that TRAM performs as expected.EPSC

画像復元のための多重露光画像の統合

一般的なカメラのCCDやCMOSセンサーのダイナミックレンジは狭く，人間が知覚可能な範囲の全ての輝度を捉えることができない．これは，露光を変え撮影した多重露光画像を統合することにより高ダイナミックレンジ画像を生成することで改善できる．本論文では，多重露光画像の統合で問題となるセンサーノイズや焦点ボケによる劣化を復元する新たな多重露光画像統合手法を提案し，従来の統合手法と比較実験を行いその有効性を示した．北九州市立大

Image Restoration

This book represents a sample of recent contributions of researchers all around the world in the field of image restoration. The book consists of 15 chapters organized in three main sections (Theory, Applications, Interdisciplinarity). Topics cover some different aspects of the theory of image restoration, but this book is also an occasion to highlight some new topics of research related to the emergence of some original imaging devices. From this arise some real challenging problems related to image reconstruction/restoration that open the way to some new fundamental scientific questions closely related with the world we interact with