XML for Domain Viewpoints

Within research institutions like CERN (European Organization for Nuclear Research) there are often disparate databases (different in format, type and structure) that users need to access in a domain-specific manner. Users may want to access a simple unit of information without having to understand detail of the underlying schema or they may want to access the same information from several different sources. It is neither desirable nor feasible to require users to have knowledge of these schemas. Instead it would be advantageous if a user could query these sources using his or her own domain models and abstractions of the data. This paper describes the basis of an XML (eXtended Markup Language) framework that provides this functionality and is currently being developed at CERN. The goal of the first prototype was to explore the possibilities of XML for data integration and model management. It shows how XML can be used to integrate data sources. The framework is not only applicable to CERN data sources but other environments too.Comment: 9 pages, 6 figures, conference report from SCI'2001 Multiconference on Systemics & Informatics, Florid

DIN Spec 91345 RAMI 4.0 compliant data pipelining: An approach to support data understanding and data acquisition in smart manufacturing environments

Today, data scientists in the manufacturing domain are confronted with a set of challenges associated to data acquisition as well as data processing including the extraction of valuable in-formation to support both, the work of the manufacturing equipment as well as the manufacturing processes behind it. One essential aspect related to data acquisition is the pipelining, including various commu-nication standards, protocols and technologies to save and transfer heterogenous data. These circumstances make it hard to understand, find, access and extract data from the sources depend-ing on use cases and applications. In order to support this data pipelining process, this thesis proposes the use of the semantic model. The selected semantic model should be able to describe smart manufacturing assets them-selves as well as to access their data along their life-cycle. As a matter of fact, there are many research contributions in smart manufacturing, which already came out with reference architectures or standards for semantic-based meta data descrip-tion or asset classification. This research builds upon these outcomes and introduces a novel se-mantic model-based data pipelining approach using as a basis the Reference Architecture Model for Industry 4.0 (RAMI 4.0).Hoje em dia, os cientistas de dados no domínio da manufatura são confrontados com várias normas, protocolos e tecnologias de comunicação para gravar, processar e transferir vários tipos de dados. Estas circunstâncias tornam difícil compreender, encontrar, aceder e extrair dados necessários para aplicações dependentes de casos de utilização, desde os equipamentos aos respectivos processos de manufatura. Um aspecto essencial poderia ser um processo de canalisação de dados incluindo vários normas de comunicação, protocolos e tecnologias para gravar e transferir dados. Uma solução para suporte deste processo, proposto por esta tese, é a aplicação de um modelo semântico que descreva os próprios recursos de manufactura inteligente e o acesso aos seus dados ao longo do seu ciclo de vida. Muitas das contribuições de investigação em manufatura inteligente já produziram arquitecturas de referência como a RAMI 4.0 ou normas para a descrição semântica de meta dados ou classificação de recursos. Esta investigação baseia-se nestas fontes externas e introduz um novo modelo semântico baseado no Modelo de Arquitectura de Referência para Indústria 4.0 (RAMI 4.0), em conformidade com a abordagem de canalisação de dados no domínio da produção inteligente como caso exemplar de utilização para permitir uma fácil exploração, compreensão, descoberta, selecção e extracção de dados

Towards Interoperability in Genome Databases: The MAtDB (MIPS Arabidopsis Thaliana Database) Experience

Increasing numbers of whole-genome sequences are available, but to interpret them fully requires more than listing all genes. Genome databases are faced with the challenges of integrating heterogenous data and enabling data mining. In comparison to a data warehousing approach, where integration is achieved through replication of all relevant data in a unified schema, distributed approaches provide greater flexibility and maintainability. These are important in a field where new data is generated rapidly and our understanding of the data changes. Interoperability between distributed data sources allows data maintenance to be separated from integration and analysis. Simple ways to access the data can facilitate the development of new data mining tools and the transition from model genome analysis to comparative genomics. With the MIPS Arabidopsis thaliana genome database (MAtDB, http://mips.gsf.de/proj/thal/db) our aim is to go beyond a data repository towards creating an integrated knowledge resource. To this end, the Arabidopsis genome has been a backbone against which to structure and integrate heterogenous data. The challenges to be met are continuous updating of data, the design of flexible data models that can evolve with new data, the integration of heterogenous data, e.g. through the use of ontologies, comprehensive views and visualization of complex information, simple interfaces for application access locally or via the Internet, and knowledge transfer across species

Conclave: Writing programs to understand programs

Software maintainers are often challenged with source code changes to improve software systems, or eliminate defects, in unfamiliar programs. To undertake these tasks a sufficient understanding of the system, or at least a small part of it, is required. One of the most time consuming tasks of this process is locating which parts of the code are responsible for some key functionality or feature. This paper introduces Conclave, an environment for software analysis, that enhances program comprehension activities. Programmers use natural languages to describe and discuss the problem domain, programming languages to write source code, and markup languages to have programs talking with other programs, and so this system has to cope with this heterogeneity of dialects, and provide tools in all these areas to effectively contribute to the understanding process. The source code, the problem domain, and the side effects of running the program are represented in the system using ontologies. A combination of tools (specialized in different kinds of languages) create mappings between the different domains. Conclave provides facilities for feature location, code search, and views of the software that ease the process of understanding the code, devising changes. The underlying feature location technique explores natural language terms used in programs (e.g. function and variable names); using textual analysis and a collection of Natural Language Processing techniques, computes synonymous sets of terms. These sets are used to score relatedness between program elements, and search queries or problem domain concepts, producing sorted ranks of program elements that address the search criteria, or concepts respectively. © Nuno Ramos Carvalho, José João Almeida, Maria João Varanda Pereira, and Pedro Rangel Henriques.(undefined)info:eu-repo/semantics/publishedVersio

an approach for semantic integration of heterogeneous data sources

Integrating data from multiple heterogeneous data sources entails dealing with data distributed among heterogeneous information sources, which can be structured, semi-structured or unstructured, and providing the user with a unified view of these data. Thus, in general, gathering information is challenging, and one of the main reasons is that data sources are designed to support specific applications. Very often their structure is unknown to the large part of users. Moreover, the stored data is often redundant, mixed with information only needed to support enterprise processes, and incomplete with respect to the business domain. Collecting, integrating, reconciling and efficiently extracting information from heterogeneous and autonomous data sources is regarded as a major challenge. In this paper, we present an approach for the semantic integration of heterogeneous data sources, DIF (Data Integration Framework), and a software prototype to support all aspects of a complex data integration process. The proposed approach is an ontology-based generalization of both Global-as-View and Local-as-View approaches. In particular, to overcome problems due to semantic heterogeneity and to support interoperability with external systems, ontologies are used as a conceptual schema to represent both data sources to be integrated and the global view

Data and knowledge manangement in field studies A case for semantic technologies

Ship design is a knowledge-intensive industry. To design safe ship systems for demanding operations, there is an increasing need for comprehensive knowledge of the operational context. Field studies is an important source of relevant knowledge, but current methods and information systems do not realise their full potential. In this paper, we discuss how the field data can be modelled semantically, integrated with relevant domain models, and be more effectively made available to the organisation. We propose a data model and a software architecture to facilitate the collaborative data analysis and modelling process favoured by designers

Security policy refinement using data integration: a position paper.

In spite of the wide adoption of policy-based approaches for security management, and many existing treatments of policy verification and analysis, relatively little attention has been paid to policy refinement: the problem of deriving lower-level, runnable policies from higher-level policies, policy goals, and specifications. In this paper we present our initial ideas on this task, using and adapting concepts from data integration. We take a view of policies as governing the performance of an action on a target by a subject, possibly with certain conditions. Transformation rules are applied to these components of a policy in a structured way, in order to translate the policy into more refined terms; the transformation rules we use are similar to those of global-as-view database schema mappings, or to extensions thereof. We illustrate our ideas with an example. Copyright 2009 ACM

Data integration support for offshore decommissioning waste management

Offshore oil and gas platforms have a design life of about 25 years whereas the techniques and tools used for managing their data are constantly evolving. Therefore, data captured about platforms during their lifetimes will be in varying forms. Additionally, due to the many stakeholders involved with a facility over its life cycle, information representation of its components varies. These challenges make data integration difficult. Over the years, data integration technology application in the oil and gas industry has focused on meeting the needs of asset life cycle stages other than decommissioning. This is the case because most assets are just reaching the end of their design lives. Currently, limited work has been done on integrating life cycle data for offshore decommissioning purposes, and reports by industry stakeholders underscore this need. This thesis proposes a method for the integration of the common data types relevant in oil and gas decommissioning. The key features of the method are that it (i) ensures semantic homogeneity using knowledge representation languages (Semantic Web) and domain specific reference data (ISO 15926); and (ii) allows stakeholders to continue to use their current applications. Prototypes of the framework have been implemented using open source software applications and performance measures made. The work of this thesis has been motivated by the business case of reusing offshore decommissioning waste items. The framework developed is generic and can be applied whenever there is a need to integrate and query disparate data involving oil and gas assets. The prototypes presented show how the data management challenges associated with assessing the suitability of decommissioned offshore facility items for reuse can be addressed. The performance of the prototypes show that significant time and effort is saved compared to the state-of‐the‐art solution. The ability to do this effectively and efficiently during decommissioning will advance the oil the oil and gas industry’s transition toward a circular economy and help save on cost

Model driven design and data integration in semantic web information systems

The Web is quickly evolving in many ways. It has evolved from a Web of documents into a Web of applications in which a growing number of designers offer new and interactive Web applications with people all over the world. However, application design and implementation remain complex, error-prone and laborious. In parallel there is also an evolution from a Web of documents into a Web of `knowledge' as a growing number of data owners are sharing their data sources with a growing audience. This brings the potential new applications for these data sources, including scenarios in which these datasets are reused and integrated with other existing and new data sources. However, the heterogeneity of these data sources in syntax, semantics and structure represents a great challenge for application designers. The Semantic Web is a collection of standards and technologies that offer solutions for at least the syntactic and some structural issues. If offers semantic freedom and flexibility, but this leaves the issue of semantic interoperability. In this thesis we present Hera-S, an evolution of the Model Driven Web Engineering (MDWE) method Hera. MDWEs allow designers to create data centric applications using models instead of programming. Hera-S especially targets Semantic Web sources and provides a flexible method for designing personalized adaptive Web applications. Hera-S defines several models that together define the target Web application. Moreover we implemented a framework called Hydragen, which is able to execute the Hera-S models to run the desired Web application. Hera-S' core is the Application Model (AM) in which the main logic of the application is defined, i.e. defining the groups of data elements that form logical units or subunits, the personalization conditions, and the relationships between the units. Hera-S also uses a so-called Domain Model (DM) that describes the content and its structure. However, this DM is not Hera-S specific, but instead allows any Semantic Web source representation as its DM, as long as its content can be queried by the standardized Semantic Web query language SPARQL. The same holds for the User Model (UM). The UM can be used for personalization conditions, but also as a source of user-related content if necessary. In fact, the difference between DM and UM is conceptual as their implementation within Hydragen is the same. Hera-S also defines a presentation model (PM) which defines presentation details of elements like order and style. In order to help designers with building their Web applications we have introduced a toolset, Hera Studio, which allows to build the different models graphically. Hera Studio also provides some additional functionality like model checking and deployment of the models in Hydragen. Both Hera-S and its implementation Hydragen are designed to be flexible regarding the user of models. In order to achieve this Hydragen is a stateless engine that queries for relevant information from the models at every page request. This allows the models and data to be changed in the datastore during runtime. We show that one way to exploit this flexibility is by applying aspect-orientation to the AM. Aspect-orientation allows us to dynamically inject functionality that pervades the entire application. Another way to exploit Hera-S' flexibility is in reusing specialized components, e.g. for presentation generation. We present a configuration of Hydragen in which we replace our native presentation generation functionality by the AMACONT engine. AMACONT provides more extensive multi-level presentation generation and adaptation capabilities as well aspect-orientation and a form of semantic based adaptation. Hera-S was designed to allow the (re-)use of any (Semantic) Web datasource. It even opens up the possibility for data integration at the back end, by using an extendible storage layer in our database of choice Sesame. However, even though theoretically possible it still leaves much of the actual data integration issue. As this is a recurring issue in many domains, a broader challenge than for Hera-S design only, we decided to look at this issue in isolation. We present a framework called Relco which provides a language to express data transformation operations as well as a collection of techniques that can be used to (semi-)automatically find relationships between concepts in different ontologies. This is done with a combination of syntactic, semantic and collaboration techniques, which together provide strong clues for which concepts are most likely related. In order to prove the applicability of Relco we explore five application scenarios in different domains for which data integration is a central aspect. This includes a cultural heritage portal, Explorer, for which data from several datasources was integrated and was made available by a mapview, a timeline and a graph view. Explorer also allows users to provide metadata for objects via a tagging mechanism. Another application is SenSee: an electronic TV-guide and recommender. TV-guide data was integrated and enriched with semantically structured data from several sources. Recommendations are computed by exploiting the underlying semantic structure. ViTa was a project in which several techniques for tagging and searching educational videos were evaluated. This includes scenarios in which user tags are related with an ontology, or other tags, using the Relco framework. The MobiLife project targeted the facilitation of a new generation of mobile applications that would use context-based personalization. This can be done using a context-based user profiling platform that can also be used for user model data exchange between mobile applications using technologies like Relco. The final application scenario that is shown is from the GRAPPLE project which targeted the integration of adaptive technology into current learning management systems. A large part of this integration is achieved by using a user modeling component framework in which any application can store user model information, but which can also be used for the exchange of user model data