Use of Hyperspectral Remote Sensing to Estimate Water Quality

Approximating and forecasting water variables like phosphorus, nitrogen, chlorophyll, dissolved organic matter, and turbidity are of supreme importance due to their strong influence on water resource quality. This chapter is aimed at showing the practicability of merging water quality observations from remote sensing with water quality modeling for efficient and effective monitoring of water quality. We examine the spatial dynamics of water quality with hyperspectral remote sensing and present approaches that can be used to estimate water quality using hyperspectral images. The methods presented here have been embraced because the blue-green and green algae peak wavelengths reflectance are close together and make their distinction more challenging. It has also been established that hyperspectral imagers permit an improved recognition of chlorophyll and hereafter algae, due to acquired narrow spectral bands between 450 nm and 600 nm. We start by describing the practical application of hyperspectral remote sensing data in water quality modeling. The surface inherent optical properties of absorption and backscattering of chlorophyll a, colored dissolved organic matter (CDOM), and turbidity are estimated, and a detailed approach on analyzing ARCHER data for water quality estimation is presented

Evaluating Radiometric Sensitivity of LandSat 8 Over Coastal-Inland Waters

The operational Land Imager (OLI) aboard Landsat 8 was launched in February 2013 to continue the Landsat's mission of monitoring earth resources at relatively high spatial resolution. Compared to Landsat heritage sensors, OLI has an additional 443-nm band (termed coastal/aerosol (CA) band), which extends its potential for mapping/monitoring water quality in coastal/inland waters. In addition, OLI's pushbroom design allows for longer integration time and, as a result, higher signal-to-noise ratio (SNR). Using a series of radiative transfer simulations, we provide insights into the radiometric sensitivity of OLI when studying coastal/inland waters. This will address how the changes in water constituents manifest at top-of-atmosphere (TOA) and whether the changes are resolvable at TOA (focal plane) relative to OLI's overall noise

Monitoring Water Siltation Caused by Small-Scale Gold Mining in Amazonian Rivers Using Multi-Satellite Images

The small-scale mining techniques applied all over the Amazon river basin use water from streams, including digging and riverbed suctioning, rarely preventing environmental impacts or recovery of the impacted areas. As a consequence, thousands of tons of inorganic sediment (which can contain mercury) have been discharged directly into the rivers creating sediment plumes that travel hundreds of kilometers downstream with unknown consequences to the water quality and aquatic biota. We hypothesize that because of intensification of mining activities in the Brazilian Amazon, clear water rivers such as the Tapajós and Xingu rivers and its tributaries are becoming permanently turbid waters (so-called white waters in the Amazonian context). To investigate this hypothesis, satellite images have been used to monitor the sediment plume caused by gold mining in Amazonian rivers. Given the threat of intense water siltation of the Amazonian rivers combined with the technological capacity of detecting it from satellite images, the objective of this chapter is to inform the main activities carried out to develop a monitoring system for quantifying water siltation caused by small-scale gold mining (SSGM) in the Amazon rivers using multi-satellite data

Ocean Color Measurements with the Operational Land Imager on Landsat-8: Implementation and Evaluation in SeaDAS

The Operational Land Imager (OLI) is a multispectral radiometer hosted on the recently launched Landsat8 satellite. OLI includes a suite of relatively narrow spectral bands at 30 m spatial resolution in the visible to shortwave infrared, which makes it a potential tool for ocean color radiometry: measurement of the reflected spectral radiance upwelling from beneath the ocean surface that carries information on the biogeochemical constituents of the upper ocean euphotic zone. To evaluate the potential of OLI to measure ocean color, processing support was implemented in Sea-viewing Wide Field-of-View Sensor (SeaWiFS) Data Analysis System (SeaDAS), which is an open-source software package distributed by NASA for processing, analysis, and display of ocean remote sensing measurements from a variety of spaceborne multispectral radiometers. Here we describe the implementation of OLI processing capabilities within SeaDAS, including support for various methods of atmospheric correction to remove the effects of atmospheric scattering and absorption and retrieve the spectral remote sensing reflectance (Rrs; sr1). The quality of the retrieved Rrs imagery will be assessed, as will the derived water column constituents, such as the concentration of the phytoplankton pigment chlorophyll a

Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems

© The Author(s), 2018. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecological Applications 28 (2018): 749-760, doi: 10.1002/eap.1682.The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a small fraction of these areas. Satellite‐based sensors can repeatedly record the visible and near‐infrared reflectance spectra that contain the absorption, scattering, and fluorescence signatures of functional phytoplankton groups, colored dissolved matter, and particulate matter near the surface ocean, and of biologically structured habitats (floating and emergent vegetation, benthic habitats like coral, seagrass, and algae). These measures can be incorporated into Essential Biodiversity Variables (EBVs), including the distribution, abundance, and traits of groups of species populations, and used to evaluate habitat fragmentation. However, current and planned satellites are not designed to observe the EBVs that change rapidly with extreme tides, salinity, temperatures, storms, pollution, or physical habitat destruction over scales relevant to human activity. Making these observations requires a new generation of satellite sensors able to sample with these combined characteristics: (1) spatial resolution on the order of 30 to 100‐m pixels or smaller; (2) spectral resolution on the order of 5 nm in the visible and 10 nm in the short‐wave infrared spectrum (or at least two or more bands at 1,030, 1,240, 1,630, 2,125, and/or 2,260 nm) for atmospheric correction and aquatic and vegetation assessments; (3) radiometric quality with signal to noise ratios (SNR) above 800 (relative to signal levels typical of the open ocean), 14‐bit digitization, absolute radiometric calibration <2%, relative calibration of 0.2%, polarization sensitivity <1%, high radiometric stability and linearity, and operations designed to minimize sunglint; and (4) temporal resolution of hours to days. We refer to these combined specifications as H4 imaging. Enabling H4 imaging is vital for the conservation and management of global biodiversity and ecosystem services, including food provisioning and water security. An agile satellite in a 3‐d repeat low‐Earth orbit could sample 30‐km swath images of several hundred coastal habitats daily. Nine H4 satellites would provide weekly coverage of global coastal zones. Such satellite constellations are now feasible and are used in various applications.National Center for Ecological Analysis and Synthesis (NCEAS); National Aeronautics and Space Administration (NASA) Grant Numbers: NNX16AQ34G, NNX14AR62A; National Ocean Partnership Program; NOAA US Integrated Ocean Observing System/IOOS Program Office; Bureau of Ocean and Energy Management Ecosystem Studies program (BOEM) Grant Number: MC15AC0000

Satellite sensor requirements for monitoring essential biodiversity variables of coastal ecosystems

The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a small fraction of these areas. Satellite-based sensors can repeatedly record the visible and near-infrared reflectance spectra that contain the absorption, scattering, and fluorescence signatures of functional phytoplankton groups, colored dissolved matter, and particulate matter near the surface ocean, and of biologically structured habitats (floating and emergent vegetation, benthic habitats like coral, seagrass, and algae). These measures can be incorporated into Essential Biodiversity Variables (EBVs), including the distribution, abundance, and traits of groups of species populations, and used to evaluate habitat fragmentation. However, current and planned satellites are not designed to observe the EBVs that change rapidly with extreme tides, salinity, temperatures, storms, pollution, or physical habitat destruction over scales relevant to human activity. Making these observations requires a new generation of satellite sensors able to sample with these combined characteristics: (1) spatial resolution on the order of 30 to 100-m pixels or smaller; (2) spectral resolution on the order of 5 nm in the visible and 10 nm in the short-wave infrared spectrum (or at least two or more bands at 1,030, 1,240, 1,630, 2,125, and/or 2,260 nm) for atmospheric correction and aquatic and vegetation assessments; (3) radiometric quality with signal to noise ratios (SNR) above 800 (relative to signal levels typical of the open ocean), 14-bit digitization, absolute radiometric calibration \u3c2%, relative calibration of 0.2%, polarization sensitivity \u3c1%, high radiometric stability and linearity, and operations designed to minimize sunglint; and (4) temporal resolution of hours to days. We refer to these combined specifications as H4 imaging. Enabling H4 imaging is vital for the conservation and management of global biodiversity and ecosystem services, including food provisioning and water security. An agile satellite in a 3-d repeat low-Earth orbit could sample 30-km swath images of several hundred coastal habitats daily. Nine H4 satellites would provide weekly coverage of global coastal zones. Such satellite constellations are now feasible and are used in various applications

Satellite Sensor Requirements for Monitoring Essential Biodiversity Variables of Coastal Ecosystems

The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a small fraction of these areas. Satellite-based sensors can repeatedly record the visible and near-infrared reflectance spectra that contain the absorption, scattering, and fluorescence signatures of functional phytoplankton groups, colored dissolved matter, and particulate matter near the surface ocean, and of biologically structured habitats (floating and emergent vegetation, benthic habitats like coral, seagrass, and algae). These measures can be incorporated into Essential Biodiversity Variables (EBVs), including the distribution, abundance, and traits of groups of species populations, and used to evaluate habitat fragmentation. However, current and planned satellites are not designed to observe the EBVs that change rapidly with extreme tides, salinity, temperatures, storms, pollution, or physical habitat destruction over scales relevant to human activity. Making these observations requires a new generation of satellite sensors able to sample with these combined characteristics: (1) spatial resolution on the order of 30 to 100-m pixels or smaller; (2) spectral resolution on the order of 5 nm in the visible and 10 nm in the short-wave infrared spectrum (or at least two or more bands at 1,030, 1,240, 1,630, 2,125, and/or 2,260 nm) for atmospheric correction and aquatic and vegetation assessments; (3) radiometric quality with signal to noise ratios (SNR) above 800 (relative to signal levels typical of the open ocean), 14-bit digitization, absolute radiometric calibratio

Hyperspectral retrievals of phytoplankton absorption and chlorophyll-a in inland and nearshore coastal waters

Following more than two decades of research and developments made possible through various proof-of-concept hyperspectral remote sensing missions, it has been anticipated that hyperspectral imaging would enhance the accuracy of remotely sensed in-water products. This study investigates such expected improvements and demonstrates the utility of hyperspectral radiometric measurements for the retrieval of near-surface phytoplankton properties1, i.e., phytoplankton absorption spectra (aph) and biomass evaluated through examining the concentration of chlorophyll-a (Chla). Using hyperspectral data (409–800 nm at ~5 nm resolution) and a class of neural networks known as Mixture Density Networks (MDN) (Pahlevan et al., 2020), we show that the median error in aph retrievals is reduced two-to-three times (N = 722) compared to that from heritage ocean color algorithms. The median error associated with our aph retrieval across all the visible bands varies between 20 and 30%. Similarly, Chla retrievals exhibit significant improvements (i.e., more than two times; N = 1902), with respect to existing algorithms that rely on select spectral bands. Using an independent matchup dataset acquired near-concurrently with the acquisition of the Hyperspectral Imager for the Coastal Ocean (HICO) images, the models are found to perform well, but at reduced levels due to uncertainties in the atmospheric correction. The mapped spatial distribution of Chla maps and aph spectra for selected HICO swaths further solidify MDNs as promising machine-learning models that have the potential to generate highly accurate aquatic remote sensing products in inland and coastal waters. For aph retrieval to improve further, two immediate research avenues are recommended: a) the network architecture requires additional optimization to enable a simultaneous retrieval of multiple in-water parameters (e.g., aph, Chla, absorption by colored dissolved organic matter), and b) the training dataset should be extended to enhance model generalizability. This feasibility analysis using MDNs provides strong evidence that high-quality, global hyperspectral data will open new pathways toward a better understanding of biodiversity in aquatic ecosystems

Mapping and monitoring of agricultural drought across different land uses and land cover in the North-Eastern KwaZulu Natal

A dissertation submitted to the School of Geography, Archaeology and Environmental Studies, Faculty of Science, University of Witwatersrand in fulfilment of the academic requirements for the degree of Master of Science in Environmental Sciences June 2018. Johannesburg, South Africa.Drought is complex and one of the least understood natural hazards in Southern Africa. Timely information about the extent, the intensity, duration and impacts of the agricultural drought is essential for adaptation and management. In this study, the research aims, are made to monitor and map agricultural drought across different land uses and land cover in north-eastern KwaZulu-Natal as it was declared a disaster area in 2016 (AgriSA, 2016). Droughts occurred throughout South Africa during the summer season of 2014 to 2015 and 2015 to 2016. In this study the adopted methodology was through the use of remote sensing and Geographic Information System (GIS) techniques. Remote sensing and GIS was used to map and monitor the agricultural drought in the study area. To understand the impacts of the drought across different agricultural land use and other land cover types, the land uses and land cover was classified using Landsat earth observation data and maximum likelihood algorithm in the study area, and multi-temporal Normalized Difference Vegetation Index (NDVI) (1997-2017) with a twenty year interval used to map and monitor the agricultural drought and the meteorological (rainfall) in order to validate the NDVIs. Agricultural drought was then determined from investigating changes between 2015 and 2017 which were years that experienced severe conditions. The rainfall data was interpolated using Inverse Distance Weighted (IDW) interpolation to understand the mean rainfall from the weather stations services. Thereafter, Standardized Precipitation Index (SPI) values were determined from the rainfall data in order to understand the severity of the droughts in certain parts of the study area from the weather station data. The meteorological analysis was cross compared with agricultural drought. The mean NDVI and mean rainfall interpolated shows that their relationship is inversely proportional, because where rainfall is low; NDVI is high for the years 2015 to 2017. The land use and land cover in the study is largely dominated by bush, cultivated cane crop, grassland and plantations. Looking at the overall classification in the year 2015, it is clear that bush land use and land cover was largely dominated in the study area, with other land use and land cover classes which were also part of the year 2015. During the year 2016 the other classes of land use and land cover where also dominating the study area for example grasslands and plantations. In the year 2017 we see cultivated cane crop start to emerge in the study area but land use and land cover is largely dominated by bush land use and land cover. The overall accuracy of the study was 74.2%. Keywords: Agricultural drought, Land use/land cover, Remote sensing, Landsat 8 OLI/TIRS, Normalized Difference Vegetation Index, Standardized Precipitation Index, Accuracy Assessment.LG201

The effect of spatial resolution in remote sensing estimates of total evaporation in the uMgeni catchment.

M. Sc. University of KwaZulu-Natal, Durban 2014.The estimation of total evaporation plays a vital role in water resources monitoring and management, especially in water-limited environments. In South Africa, the increasing water demand, due to population growth and economic development, threatens the long-term water supply. This, therefore, underscores the need to account for water by different consumers, for well-informed management, allocation and future planning. Currently, there are different methods (i.e. ground-based and remote sensing-based methods), which have been developed and implemented to quantify total evaporation at different spatial and temporal scales. However, previous studies have shown that ground-based methods are inadequate for understanding the spatial variations of total evaporation, within a heterogeneous landscape; they only represent a small area, when compared to remotely sensed methods. The advent of remote sensing therefore provides an invaluable opportunity for the spatial characterization of total evaporation at different spatial scales. This study is primarily aimed at estimating variations of total evaporation across a heterogeneous catchment in KwaZulu-Natal, South Africa, using remote sensing data. The first part provides an overview of total evaporation, its importance within the water balance and consequently in the management of water resources. It also covers various methods developed to estimate total evaporation, highlighting their applications, limitations, and finally, the need for further research. Secondly, the study determines the effect of sensor spatial resolution in estimating variations of total evaporation within a heterogeneous uMngeni Catchment. Total evaporation estimates were derived, using multispectral 30 m Landsat 8 and 1000 m MODIS, based on the Surface Energy Balance (SEBS) model. The results have shown that different sensors, with varying spatial resolutions, have different abilities in representing variations of total evaporation at catchment scale. It was found that Landsat-based estimates were significantly different (p < 0.05) from MODIS. The study finally estimates spatial variations of total evaporation from Landsat 8 and MODIS datasets for the uMngeni Catchment. It was found that the Landsat 8 dataset has greater potential for the detection of spatial variations of total evaporation, when compared to the MODIS dataset. For instance, MODIS-based daily total evaporation estimates did not show any significant difference across different land cover types (One way ANOVA; F1.924 = 1.412, p= 0.186), when compared to the 30 m Landsat 8, which yielded significantly different estimates between different land cover types (One way ANOVA; F1.993= 5.185, p < 0.001). The validation results further indicate that Landsat-based estimates were more comparable to ground-based eddy covariance measurements (R2 = 0.72, with a RMSE of 32.34 mm per month (30.30% of the mean)). In contrast, MODIS performed poorly (R2 = 0.44), with a RMSE of 93.63 mm per month (87.74% of the mean). In addition, land cover-based estimates have shown that, not only does the land cover type have an effect on total evaporation, but also the land cover characteristics, such as areal extent and patchiness. Overall, findings from this study underscore the importance of the sensor type, especially spatial resolution, and land cover type characteristics, such as areal extent and patchiness, in accurately and reliably estimating total evaporation at a catchment scale. It is also evident from the study that the spatial and temporal variations in SEBS inputs (e.g., LAI, NDVI and FVC) and energy fluxes (e.g., Rn) calculated by SEBS for the two sensors can affect the spatial and temporal variations in total evaporation estimates. For instance, spatial variations in total evaporation reflected similar spatial variations in Rn. Areas with high NDVI, FVC and LAI (which denotes dense vegetation cover) tend to have higher total evaporation estimates, compared to areas with lower vegetation cover. In addition, the MODIS sensor at 1000 m spatial resolution showed lower estimates of SEBS inputs with less variability across the catchment. This resulted in lower total evaporation estimates, with less variability, compared to the 30 m Landsat 8. In addition, with regard to inputs derived from remote sensing, it was found that the spatial variations in total evaporation are not determined by individual variables (e.g., LST), but are influenced by a combination of many biophysical variables, such as LAI, FVC and NDVI. These findings lay a foundation for a better approach to estimate total evaporation using remote sensing for use in the management and allocation of water