Learning-based Automatic Parameter Tuning for Big Data Analytics Frameworks

Big data analytics frameworks (BDAFs) have been widely used for data processing applications. These frameworks provide a large number of configuration parameters to users, which leads to a tuning issue that overwhelms users. To address this issue, many automatic tuning approaches have been proposed. However, it remains a critical challenge to generate enough samples in a high-dimensional parameter space within a time constraint. In this paper, we present AutoTune--an automatic parameter tuning system that aims to optimize application execution time on BDAFs. AutoTune first constructs a smaller-scale testbed from the production system so that it can generate more samples, and thus train a better prediction model, under a given time constraint. Furthermore, the AutoTune algorithm produces a set of samples that can provide a wide coverage over the high-dimensional parameter space, and searches for more promising configurations using the trained prediction model. AutoTune is implemented and evaluated using the Spark framework and HiBench benchmark deployed on a public cloud. Extensive experimental results illustrate that AutoTune improves on default configurations by 63.70% on average, and on the five state-of-the-art tuning algorithms by 6%-23%.Comment: 12 pages, submitted to IEEE BigData 201

ALOJA: A framework for benchmarking and predictive analytics in Hadoop deployments

This article presents the ALOJA project and its analytics tools, which leverages machine learning to interpret Big Data benchmark performance data and tuning. ALOJA is part of a long-term collaboration between BSC and Microsoft to automate the characterization of cost-effectiveness on Big Data deployments, currently focusing on Hadoop. Hadoop presents a complex run-time environment, where costs and performance depend on a large number of configuration choices. The ALOJA project has created an open, vendor-neutral repository, featuring over 40,000 Hadoop job executions and their performance details. The repository is accompanied by a test-bed and tools to deploy and evaluate the cost-effectiveness of different hardware configurations, parameters and Cloud services. Despite early success within ALOJA, a comprehensive study requires automation of modeling procedures to allow an analysis of large and resource-constrained search spaces. The predictive analytics extension, ALOJA-ML, provides an automated system allowing knowledge discovery by modeling environments from observed executions. The resulting models can forecast execution behaviors, predicting execution times for new configurations and hardware choices. That also enables model-based anomaly detection or efficient benchmark guidance by prioritizing executions. In addition, the community can benefit from ALOJA data-sets and framework to improve the design and deployment of Big Data applications.This project has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement No 639595). This work is partially supported by the Ministry of Economy of Spain under contracts TIN2012-34557 and 2014SGR1051.Peer ReviewedPostprint (published version

Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

A Survey on Automatic Parameter Tuning for Big Data Processing Systems

Big data processing systems (e.g., Hadoop, Spark, Storm) contain a vast number of configuration parameters controlling parallelism, I/O behavior, memory settings, and compression. Improper parameter settings can cause significant performance degradation and stability issues. However, regular users and even expert administrators grapple with understanding and tuning them to achieve good performance. We investigate existing approaches on parameter tuning for both batch and stream data processing systems and classify them into six categories: rule-based, cost modeling, simulation-based, experiment-driven, machine learning, and adaptive tuning. We summarize the pros and cons of each approach and raise some open research problems for automatic parameter tuning.Peer reviewe