Blending Learning and Inference in Structured Prediction

In this paper we derive an efficient algorithm to learn the parameters of structured predictors in general graphical models. This algorithm blends the learning and inference tasks, which results in a significant speedup over traditional approaches, such as conditional random fields and structured support vector machines. For this purpose we utilize the structures of the predictors to describe a low dimensional structured prediction task which encourages local consistencies within the different structures while learning the parameters of the model. Convexity of the learning task provides the means to enforce the consistencies between the different parts. The inference-learning blending algorithm that we propose is guaranteed to converge to the optimum of the low dimensional primal and dual programs. Unlike many of the existing approaches, the inference-learning blending allows us to learn efficiently high-order graphical models, over regions of any size, and very large number of parameters. We demonstrate the effectiveness of our approach, while presenting state-of-the-art results in stereo estimation, semantic segmentation, shape reconstruction, and indoor scene understanding

Differentiation of recurrent glioblastoma from radiation necrosis using diffusion radiomics with machine learning model development and external validation

The purpose of this study was to establish a high-performing radiomics strategy with machine learning from conventional and diffusion MRI to differentiate recurrent glioblastoma (GBM) from radiation necrosis (RN) after concurrent chemoradiotherapy (CCRT) or radiotherapy. Eighty-six patients with GBM were enrolled in the training set after they underwent CCRT or radiotherapy and presented with new or enlarging contrast enhancement within the radiation field on follow-up MRI. A diagnosis was established either pathologically or clinicoradiologically (63 recurrent GBM and 23 RN). Another 41 patients (23 recurrent GBM and 18 RN) from a different institution were enrolled in the test set. Conventional MRI sequences (T2-weighted and postcontrast T1-weighted images) and ADC were analyzed to extract 263 radiomic features. After feature selection, various machine learning models with oversampling methods were trained with combinations of MRI sequences and subsequently validated in the test set. In the independent test set, the model using ADC sequence showed the best diagnostic performance, with an AUC, accuracy, sensitivity, specificity of 0.80, 78%, 66.7%, and 87%, respectively. In conclusion, the radiomics models models using other MRI sequences showed AUCs ranging from 0.65 to 0.66 in the test set. The diffusion radiomics may be helpful in differentiating recurrent GBM from RN..ope

Minimal supervision for language learning: bootstrapping global patterns from local knowledge

A fundamental step in sentence comprehension involves assigning semantic roles to sentence constituents. To accomplish this, the listener must parse the sentence, find constituents that are candidate arguments, and assign semantic roles to those constituents. Each step depends on prior lexical and syntactic knowledge. Where do children begin in solving this problem when learning their first languages? To experiment with different representations that children may use to begin understanding language, we have built a computational model for this early point in language acquisition. This system, BabySRL, learns from transcriptions of natural child-directed speech and makes use of psycholinguistically plausible background knowledge and realistically noisy semantic feedback to begin to classify sentences at the level of ``who does what to whom.'' Starting with simple, psycholinguistically-motivated representations of sentence structure, the BabySRL is able to learn from full semantic feedback, as well as a supervision signal derived from partial semantic background knowledge. In addition we combine the BabySRL with an unsupervised Hidden Markov Model part-of-speech tagger, linking clusters with syntactic categories using background noun knowledge so that they can be used to parse input for the SRL system. The results show that proposed shallow representations of sentence structure are robust to reductions in parsing accuracy, and that the contribution of alternative representations of sentence structure to successful semantic role labeling varies with the integrity of the parsing and argument-identification stages. Finally, we enable the BabySRL to improve both an intermediate syntactic representation and its final semantic role classification. Using this system we show that it is possible for a simple learner in a plausible (noisy) setup to begin comprehending simple semantics when initialized with a small amount of concrete noun knowledge and some simple syntax-semantics mapping biases, before acquiring any specific verb knowledge

Predicting Linguistic Structure with Incomplete and Cross-Lingual Supervision

Contemporary approaches to natural language processing are predominantly based on statistical machine learning from large amounts of text, which has been manually annotated with the linguistic structure of interest. However, such complete supervision is currently only available for the world's major languages, in a limited number of domains and for a limited range of tasks. As an alternative, this dissertation considers methods for linguistic structure prediction that can make use of incomplete and cross-lingual supervision, with the prospect of making linguistic processing tools more widely available at a lower cost. An overarching theme of this work is the use of structured discriminative latent variable models for learning with indirect and ambiguous supervision; as instantiated, these models admit rich model features while retaining efficient learning and inference properties. The first contribution to this end is a latent-variable model for fine-grained sentiment analysis with coarse-grained indirect supervision. The second is a model for cross-lingual word-cluster induction and the application thereof to cross-lingual model transfer. The third is a method for adapting multi-source discriminative cross-lingual transfer models to target languages, by means of typologically informed selective parameter sharing. The fourth is an ambiguity-aware self- and ensemble-training algorithm, which is applied to target language adaptation and relexicalization of delexicalized cross-lingual transfer parsers. The fifth is a set of sequence-labeling models that combine constraints at the level of tokens and types, and an instantiation of these models for part-of-speech tagging with incomplete cross-lingual and crowdsourced supervision. In addition to these contributions, comprehensive overviews are provided of structured prediction with no or incomplete supervision, as well as of learning in the multilingual and cross-lingual settings. Through careful empirical evaluation, it is established that the proposed methods can be used to create substantially more accurate tools for linguistic processing, compared to both unsupervised methods and to recently proposed cross-lingual methods. The empirical support for this claim is particularly strong in the latter case; our models for syntactic dependency parsing and part-of-speech tagging achieve the hitherto best published results for a wide number of target languages, in the setting where no annotated training data is available in the target language

Automatic inference of causal reasoning chains from student essays

While there has been an increasing focus on higher-level thinking skills arising from the Common Core Standards, many high-school and middle-school students struggle to combine and integrate information from multiple sources when writing essays. Writing is an important learning skill, and there is increasing evidence that writing about a topic develops a deeper understanding in the student. However, grading essays is time consuming for teachers, resulting in an increasing focus on shallower forms of assessment that are easier to automate, such as multiple-choice tests. Existing essay grading software has attempted to ease this burden but relies on shallow lexico-syntactic features and is unable to understand the structure or validity of a student’s arguments or explanations. Without the ability to understand a student’s reasoning processes, it is impossible to write automated formative assessment systems to assist students with improving their thinking skills through essay writing. In order to understand the arguments put forth in an explanatory essay in the science domain, we need a method of representing the causal structure of a piece of explanatory text. Psychologists use a representation called a causal model to represent a student\u27s understanding of an explanatory text. This consists of a number of core concepts, and a set of causal relations linking them into one or more causal chains, forming a causal model. In this thesis I present a novel system for automatically constructing causal models from student scientific essays using Natural Language Processing (NLP) techniques. The problem was decomposed into 4 sub-problems - assigning essay concepts to words, detecting causal-relations between these concepts, resolving coreferences within each essay, and using the structure of the whole essay to reconstruct a causal model. Solutions to each of these sub-problems build upon the predictions from the solutions to earlier problems, forming a sequential pipeline of models. Designing a system in this way allows later models to correct for false positive predictions from downstream models. However, this also has the disadvantage that errors made in earlier models can propagate through the system, negatively impacting the upstream models, and limiting their accuracy. Producing robust solutions for the initial 2 sub problems, detecting concepts, and parsing causal relations between them, was critical in building a robust system. A number of sequence labeling models were trained to classify the concepts associated with each word, with the most effective approach being a bidirectional recurrent neural network (RNN), a deep learning model commonly applied to word labeling problems. This is because the RNN used pre-trained word embeddings to better generalize to rarer words, and was able to use information from both ends of each sentence to infer a word\u27s concept. The concepts predicted by this model were then used to develop causal relation parsing models for detecting causal connections between these concepts. A shift-reduce dependency parsing model was trained using the SEARN algorithm and out-performed a number of other approaches by better utilizing the structure of the problem and directly optimizing the error metric used. Two pre-trained coreference resolution systems were used to resolve coreferences within the essays. However a word tagging model trained to predict anaphors combined with a heuristic for determining the antecedent out-performed these two systems. Finally, a model was developed for parsing a causal model from an entire essay, utilizing the solutions to the three previous problems. A beam search algorithm was used to produce multiple parses for each sentence, which in turn were combined to generate multiple candidate causal models for each student essay. A reranking algorithm was then used to select the optimal causal model from all of the generated candidates. An important contribution of this work is that it represents a system for parsing a complete causal model of a scientific essay from a student\u27s written answer. Existing systems have been developed to parse individual causal relations, but no existing system attempts to parse a sequence of linked causal relations forming a causal model from an explanatory scientific essay. It is hoped that this work can lead to the development of more robust essay grading software and formative assessment tools, and can be extended to build solutions for extracting causality from text in other domains. In addition, I also present 2 novel approaches for optimizing the micro-F1 score within the design of two of the algorithms studied: the dependency parser and the reranking algorithm. The dependency parser uses a custom cost function to estimate the impact of parsing mistakes on the overall micro-F1 score, while the reranking algorithm allows the micro-F1 score to be optimized by tuning the beam search parameter to balance recall and precision