Ecoengineering with Ecohydrology: Successes and failures in estuarine restoration

© 2016 Elsevier Ltd. Ecological Engineering (or Ecoengineering) is increasingly used in estuaries to re-create and restore ecosystems degraded by human activities, including reduced water flow or land poldered for agricultural use. Here we focus on ecosystem recolonization by the biota and their functioning and we separate Type A Ecoengineering where the physico-chemical structure is modified on the basis that ecological structure and functioning will then follow, and Type B Ecoengineering where the biota are engineered directly such as through restocking or replanting. Modifying the physical system to create and restore natural processes and habitats relies on successfully applying Ecohydrology, where suitable physical conditions, especially hydrography and sedimentology, are created to recover estuarine ecology by natural or human-mediated colonisation of primary producers and consumers, or habitat creation. This successional process then allows wading birds and fish to reoccupy the rehabilitated areas, thus restoring the natural food web and recreating nursery areas for aquatic biota. We describe Ecohydrology principles applied during Ecoengineering restoration projects in Europe, Australia, Asia, South Africa and North America. These show some successful and sustainable approaches but also others that were less than successful and not sustainable despite the best of intentions (and which may even have harmed the ecology). Some schemes may be 'good for the ecologists', as conservationists consider it successful that at least some habitat was created, albeit in the short-term, but arguably did little for the overall ecology of the area in space or time. We indicate the trade-offs between the short- and long-term value of restored and created ecosystems, the success at developing natural structure and functioning in disturbed estuaries, the role of this in estuarine and wetland management, and the costs and benefits of Ecoengineering to the socio-ecological system. These global case studies provide important lessons for both the science and management of estuaries, including that successful estuarine restoration is a complex and often difficult process, and that Ecoengineering with Ecohydrology aims to control and/or simulate natural ecosystem processes

Evaluation of the ecological impacts of beaver reintroduction on aquatic systems

The extent and quality of freshwater systems is declining globally. Combined with past drainage, straightening and flow regulation, current systems are often functional but not pristine. Conservation, creation and restoration of freshwater systems is common but requires significant planning, resources and active monitoring and may only be a short-term solution to the long-term problem of destruction and loss of riparian zones. Beavers (Castor spp.) have the ability to create physical and biological habitat heterogeneity through the construction of woody debris dams, thereby restoring lost natural discontinuities in freshwater systems. Beavers may thus offer a natural, more passive solution to the need for wetland restoration or creation and the problem of homogenisation of watercourses. As such, numerous beaver reintroductions and introductions have been undertaken based in part on restoring this lost natural heritage. However, it is crucial to be able to predict the potential effects on existing biota of physical modifications by beavers to ecosystems, especially in the light of further population expansion, whilst also disentangling these effects from other influences, namely herbivory. The impact of beavers on aquatic systems was studied using a combination of field-based surveys and experiments, using aquatic plants and macro-invertebrates as indicators of hydromorphological changes and to quantify the effects of direct foraging. The research presented in this thesis demonstrates beaver adaptive foraging behaviours between terrestrial and aquatic habitats, whilst feeding highly selectively, optimally and opportunistically, using the white water lily (Nymphaea alba) as a model species. The effects of beaver foraging on the aquatic plant resource and diversity was low over short time spans (e.g. 1 year), but when selective foraging was assessed over greater time scales (e.g. 10 years) the effects of foraging were distinct. Significant changes in aquatic plant height, biomass, richness, diversity and composition were observed over this time period due to selective grazing on large rhizomatous species (e.g. Menyanthes trifoliata). These direct effects occurred even though changes in water levels, which are commonly believed to be the main driver of beaver influence on aquatic vegetation, were negligible. In a separate study in Sweden where beavers commonly constructed dams, with ponds then forming upstream, the aquatic plant and coleoptera species richness and composition differed in comparison to adjacent non-beaver created wetlands. Therefore, having a range of wetland types in the environment increases physical and biological heterogeneity creating unique niches that are exploited by disparate taxa. The construction of a series of dams within a single reach of stream flowing through a Scottish agricultural landscape also increased physical habitat diversity. Distinctive macroinvertebrate assemblages and modified functional diversity were associated with each dominant habitat type in the stream, resulting in increased landscape scale richness. The findings of this thesis confirm that beaver engineering and foraging has the potential to create unique and highly heterogeneous wetland and stream habitats within landscapes that enhances richness and diversity for multiple species groups. This thesis also supports part of the rationale for the trial reintroduction of beaver to Scotland that beavers can restore degraded habitats

Women in Science 2015

Women in Science 2015 summarizes research done by Smith College’s Summer Research Fellowship (SURF) Program participants. Ever since its 1967 start, SURF has been a cornerstone of Smith’s science education. In 2015, 162 students participated in SURF (153 hosted on campus and nearby eld sites), supervised by 60 faculty mentor-advisors drawn from the Clark Science Center and connected to its eighteen science, mathematics, and engineering departments and programs and associated centers and units. At summer’s end, SURF participants were asked to summarize their research experiences for this publication.https://scholarworks.smith.edu/clark_womeninscience/1002/thumbnail.jp

Flood alleviation and restoration on the Lourens river, Somerset west, South Africa

>Magister Scientiae - MScSomerset West and Strand in the Western Cape, South Africa, were developed on the Lourens River floodplain. This hardened the catchment and reduced the capacity of the river to transport and store floodwaters. The result was recurrent flooding of residential and industrial areas and a fear that this could lead to loss of human life. In response to these concerns, the City of Cape Town implemented flood alleviation measures with a ‘soft’ engineering approach that incorporated geomorphological and ecological principles into their design. This was one of the first engineer/ecologist collaborations in South Africa, which attempted to make better decisions for the river ecosystem within the constraints imposed on it by urban development; and in so doing to create a self-sustaining river that requires little ongoing manipulation. The aim of this dissertation was to assess the extent to which ecological considerations were incorporated into the flood alleviation works on the Lourens River and whether this improved physical habitat and the diversity of riverine biota. Physical habitat was mapped from 1:50 000 topographic maps and aerial imagery in a GIS, and cross-sectional profiles, diversity of hydraulic biotopes and subtsrate composition were surveyed in the field

Multiple Sclerosis Identification Based on Fractional Fourier Entropy and a Modified Jaya Algorithm

Aim: Currently, identifying multiple sclerosis (MS) by human experts may come across the problem of “normal-appearing white matter”, which causes a low sensitivity. Methods: In this study, we presented a computer vision based approached to identify MS in an automatic way. This proposed method first extracted the fractional Fourier entropy map from a specified brain image. Afterwards, it sent the features to a multilayer perceptron trained by a proposed improved parameter-free Jaya algorithm. We used cost-sensitivity learning to handle the imbalanced data problem. Results: The 10 × 10-fold cross validation showed our method yielded a sensitivity of 97.40 ± 0.60%, a specificity of 97.39 ± 0.65%, and an accuracy of 97.39 ± 0.59%. Conclusions: We validated by experiments that the proposed improved Jaya performs better than plain Jaya algorithm and other latest bioinspired algorithms in terms of classification performance and training speed. In addition, our method is superior to four state-of-the-art MS identification approaches

Science-based restoration monitoring of coastal habitats, Volume Two: Tools for monitoring coastal habitats

Healthy coastal habitats are not only important ecologically; they also support healthy coastal communities and improve the quality of people’s lives. Despite their many benefits and values, coastal habitats have been systematically modified, degraded, and destroyed throughout the United States and its protectorates beginning with European colonization in the 1600’s (Dahl 1990). As a result, many coastal habitats around the United States are in desperate need of restoration. The monitoring of restoration projects, the focus of this document, is necessary to ensure that restoration efforts are successful, to further the science, and to increase the efficiency of future restoration efforts

Brook trout response to canopy and large woody debris manipulations in Appalachian streams

The forested riparian area along many central Appalachian streams contains large volumes of harvestable timber. Best management practices (BMP) and streamside management zones (SMZ) have been developed to minimize the impacts of riparian timber harvest. Large woody debris (LWD) is an important component of forested streams and its role in chemical, biological, and physical processes in streams is complex. The extraction of timber within the streamside management zone reduces the amount of material available for aquatic structure.;Three-250 m study reaches were established on eight Appalachian headwater streams. Four of the streams were assigned the treatment of having a 50% basal area removal of SMZ timber and four were assigned a 90% basal area removal of SMZ timber. The down and up sections of each stream were then randomly assigned to be either basal area removal (removal) treatment or basal area removal plus instream LWD addition (removal + LWD) treatment, with reference sections located upstream of the treatment sections.;Pool habitat features changed substantially in all three sections, with variation between post-harvest study years. However, pool area did not increase after the addition of LWD. Post-harvest stream temperature exhibited a constant pattern of increased warming as water moved downstream through the harvest zones. Mean maximum daily temperature downstream of timber harvest in 90% removal streams was an average of 3.1°C warmer than above harvest sections, and mean daily temperature was 1.1°C warmer. The 50% removal streams did not exhibit the large increases in stream warming seen in the 90% removal streams.;Seasonal population estimates of brook trout were conducted in 2005 (pre-treatment) 2007 and 2008 (post-treatment). Brook trout populations fluctuated over time, but did not show a consistent increase following treatment. Mean total length of YOY brook trout did vary across some streams and sections but was not significant among treatments. The condition (Wr) of age 1+ brook trout (\u3e120 mm) did not differ between treatment and reference sections in 50% or 90% streams. Overall percent retention of resident fish differed significantly between sections. Percent immigration was high in all sections (60--71%) suggesting high rates of movement.;Consumption estimates by origin of prey varied significantly within sections over the course of the study. Brook trout consumed a greater proportion of terrestrial invertebrates in reference sections than in timber removal sections during the study. Increased timber harvest intensity resulted in decreased consumption of terrestrial invertebrates by brook trout. Terrestrial invertebrates represent a greater proportion of the abundance, biomass and energy for brook trout in reference sites and may be greatly reduced in timbered areas. Brook trout in removal and reference sections exploited particular prey taxa at significantly different rates.;The results of our study show that it is necessary to assess trends in habitat changes, and brook trout populations over several years as there are several unknowns associated with the possible response to varying basal area removal. In addition, our study suggests that there could be changes in brook trout diet in the removal sections and a potential shift in the feeding habits of brook trout, and a reduction of terrestrial invertebrate availability to brook trout may result in decreased growth of Appalachian brook trout in these sections

The influence of signal crayfish on fine sediment dynamics and macroinvertebrate communities in lowland rivers

The spread of non-native species is a global threat and the rate at which biological invasions occur is likely to increase in the future. This thesis examines the implications of the invasive signal crayfish, Pacifastacus leniusculus (Dana), for instream communities and abiotic processes within lowland rivers in England. The potential effects on lotic macroinvertebrate communities and fine sediment dynamics are investigated at a range of spatial and temporal scales, from the examination of national long-term datasets through to short-term detailed mesocosm experiments. Interrogation of macroinvertebrate community data from three English regions was undertaken to understand the temporal and spatial extent of signal crayfish effects. Invasive crayfish had significant long-term and persistent effects on resident macroinvertebrate communities regardless of the lithology or other environmental characteristics of the region. The resultant modifications to community composition had repercussions for several widely employed freshwater biomonitoring tools which employ faunal abundance in their derivation. A reach-scale field study was undertaken at two sites, one invaded by crayfish and one which did not support populations of crayfish (control), to assess the potential contribution of signal crayfish for fine sediment dynamics (ingress, fluxes and ultimately the overall implications for sediment budgets). Reach-scale field experiments examining the effect of crayfish invasion on resident macroinvertebrate communities over a 126-day period indicated that once crayfish populations are well-established their effects are persistent. However, separating the effects of crayfish from wider macroinvertebrate community dynamics and life-history characteristics of the invader and resident taxa means that attributing the effects is far from clear. The thesis presents the results of a series of novel mesocosm experiments which examined the dynamic and two-way interactions of predator-prey relationships and potential zoogeomorphological effects of signal crayfish and the freshwater shrimp, Gammarus pulex. Signal crayfish had a significant effect on the mass of fine sediment infiltrating into the gravel matrix associated with foraging and predatory activity; however this was strongly controlled by prey availability. Finally, through the development of conceptual models, the thesis illustrates the need for greater integration of ecological and geomorphological theories, at relevant environmental scales (temporal and spatial) to achieve truly interdisciplinary research

Macrobenthos used to validate multi-criteria derived marine biodiversity spatial zones in KwaZulu-Natal, South Africa.

Masters Degree. University of KwaZulu-Natal, Durban.Compared to terrestrial ecosystems, the characteristics of marine ecosystems remain largely under-explored. Marine and coastal ecosystems provide a number of ecological services and societal benefits (resources for commercial opportunity, food, recreation, and transport) which, in turn, has developed a strong reliance on these ecosystems. However, the increasing direct extraction of living and non-living resources and effects of urbanisation of adjacent coasts has placed a significant loss of habitats and associated essential diversity. To conserve biodiversity and retain specific goods and services provided by these ecosystems, marine conservation plans aim to protect spatial areas that are critical in the support of these benefits. Due to the paucity of adequate biological data and the prohibitive cost of directly sampling benthic biota over large areas, the most effective means of developing benthic habitat maps, used as biodiversity surrogates, is to use commonly available marine abiotic attributes. In KwaZulu-Natal (KZN), through marine spatial planning (MSP) the derivation of a marine conservation plan is well underway. The next step is to expedite the plan by investigating whether surrogates for biodiversity exist at different ecosystem levels, one being the infauna of unconsolidated sediments, mid-shelf 50-80 m. This work presents an outcome of the ACEP ‘Surrogacy Project’ that assessed whether predefined biodiversity zones (biozones) represent the taxonomic/functional attributes of macrobenthic communities. Biozones were subdivided into various subclusters from Richards Bay to uMkhomazi with 19 (57 replicates) stations sampled during the winter of 2014 across the biozones to represent replicate ‘treatments’. Macrobenthic communities were classified taxonomically, to the lowest level possible, and then on biological traits. Community patterns were investigated along the mid-shelf, and related to measurable biophysical factors. Environmental parameters measured included sedimentary characteristics as well as the bottom 5 m of water column characteristics per station. A total 33 215 individuals belonging to 634 taxa were recorded along the mid-shelf, of which the majority were Polychaeta and Crustacea, with the latter being highly abundant. Cluster analysis resolved into seven taxonomic groups distributed according to different habitats that are characteristic to the KZN shelf. The use of coarser taxonomic resolution (Phylum-Genus) or indicator taxa (Polychaeta and Amphipoda) as surrogates for total community richness were independently investigated using the same macrofaunal abundance data. Results showed similar clustering of samples to total fauna (Species-level) when data were analysed at Family-Genus taxonomic level and at Polychaeta indicator taxa, suggesting that the same amount of information was being gained using data based on these taxonomic level and indicator taxa. The results of the BIOENV analyses were also broadly similar for both taxonomic levels of analyses, in terms of both the proportion of the variation in assemblage structure explained by the selected environmental variables and the choice of selected variables. These results suggested that the information gathered at Family-Genus level and Polychaeta indicator can be used as a proxy for the whole macrobenthic community. This has important implications for future studies and for MSP. Using nine traits, across 51 categories, four main functional groups were found off Thukela, Zinkwazi to Durban, and Durban to uMkhomazi. The groups were characterised as being free-living carnivores, hard-skeleton direct-developing omnivores, and soft-bodied or hard-shelled omnivores with planktotrophic larvae. These patterns were explained by the KZN shelf habitat complexity, including level of different sediment grains, TOC, carbonates, water column turbidity, salinity, dissolved oxygen and temperature. Thus far, distribution patterns and functional attributes of the macrobenthos do not fully agree with modelled biozone separations (KZN MSP biozone model). Because they are an important component of marine ecosystem functioning, biozone model derivations require the addition of a macrobenthic component, in particular information about diversity patterns, to identify areas for conservation. Suggested, is a refinement of the current benthic habitat layer by incorporating biological data. Further, by using validated sediment distribution, taxonomic and functional attributes that determine soft-bottom macrofaunal distribution at a variety of spatial scales, an alternative biozone model to the current MSP predefined biozones was proposed. This multi-approach resolved into a simplified model with four biozones. These are likely better predictors of spatial variation in ecosystem processes and biodiversity as domains that are biologically informed, and are a key requirement for effective marine management. This study demonstrates the critical importance of testing assumptions about surrogacy and an approach for refining surrogates. Further studies are required to establish whether the proposed model adequately represents other ecological components (e.g. epifauna). The findings of this study contribute significantly to existing local knowledge, including augmenting and refining taxonomic information of the KZN shelf. In addition, this study subsidises poor information for large spatial areas in local and national marine conservation plans. The proposed biozone model may facilitate an understating of ecosystem process in the region and contributes to integrated marine management