Cancer diagnosis using deep learning: A bibliographic review

In this paper, we first describe the basics of the field of cancer diagnosis, which includes steps of cancer diagnosis followed by the typical classification methods used by doctors, providing a historical idea of cancer classification techniques to the readers. These methods include Asymmetry, Border, Color and Diameter (ABCD) method, seven-point detection method, Menzies method, and pattern analysis. They are used regularly by doctors for cancer diagnosis, although they are not considered very efficient for obtaining better performance. Moreover, considering all types of audience, the basic evaluation criteria are also discussed. The criteria include the receiver operating characteristic curve (ROC curve), Area under the ROC curve (AUC), F1 score, accuracy, specificity, sensitivity, precision, dice-coefficient, average accuracy, and Jaccard index. Previously used methods are considered inefficient, asking for better and smarter methods for cancer diagnosis. Artificial intelligence and cancer diagnosis are gaining attention as a way to define better diagnostic tools. In particular, deep neural networks can be successfully used for intelligent image analysis. The basic framework of how this machine learning works on medical imaging is provided in this study, i.e., pre-processing, image segmentation and post-processing. The second part of this manuscript describes the different deep learning techniques, such as convolutional neural networks (CNNs), generative adversarial models (GANs), deep autoencoders (DANs), restricted Boltzmann’s machine (RBM), stacked autoencoders (SAE), convolutional autoencoders (CAE), recurrent neural networks (RNNs), long short-term memory (LTSM), multi-scale convolutional neural network (M-CNN), multi-instance learning convolutional neural network (MIL-CNN). For each technique, we provide Python codes, to allow interested readers to experiment with the cited algorithms on their own diagnostic problems. The third part of this manuscript compiles the successfully applied deep learning models for different types of cancers. Considering the length of the manuscript, we restrict ourselves to the discussion of breast cancer, lung cancer, brain cancer, and skin cancer. The purpose of this bibliographic review is to provide researchers opting to work in implementing deep learning and artificial neural networks for cancer diagnosis a knowledge from scratch of the state-of-the-art achievements

PREDICTION OF RESPIRATORY MOTION

Radiation therapy is a cancer treatment method that employs high-energy radiation beams to destroy cancer cells by damaging the ability of these cells to reproduce. Thoracic and abdominal tumors may change their positions during respiration by as much as three centimeters during radiation treatment. The prediction of respiratory motion has become an important research area because respiratory motion severely affects precise radiation dose delivery. This study describes recent radiotherapy technologies including tools for measuring target position during radiotherapy and tracking-based delivery systems. In the first part of our study we review three prediction approaches of respiratory motion, i.e., model-based methods, model-free heuristic learning algorithms, and hybrid methods. In the second part of our work we propose respiratory motion estimation with hybrid implementation of extended Kalman filter. The proposed method uses the recurrent neural network as the role of the predictor and the extended Kalman filter as the role of the corrector. In the third part of our work we further extend our research work to present customized prediction of respiratory motion with clustering from multiple patient interactions. For the customized prediction we construct the clustering based on breathing patterns of multiple patients using the feature selection metrics that are composed of a variety of breathing features. In the fourth part of our work we retrospectively categorize breathing data into several classes and propose a new approach to detect irregular breathing patterns using neural networks. We have evaluated the proposed new algorithm by comparing the prediction overshoot and the tracking estimation value. The experimental results of 448 patients’ breathing patterns validated the proposed irregular breathing classifier

Health Risk Measurement and Assessment Technology: Current State and Future Prospect

With accelerated technologies, different kinds of health technology devices have been provided to customers that continuously record bio and vital signals. Some of these products are wearable that can be used all day long and during sleeping time. Due to the wearability feature and continuous recording, a vast amount of data can be achieved and analyzed. The recorded data are usually shared with a cloud to implement comprehensive analysis methods where deep and machine learning algorithms play the main role. Finally, they can assess some health factors of the customer and most likely predict future health risks. This chapter shall review the role of the clinical scanners and their valuable data in risk detection, more portable modalities, home-used commercial devices, and emerging techniques which are so potent for future home-used health risks analysis. In the end, we conclude the state-of-the-art and provide our vision about the future of health risk analysis

A Fast Neural Network Approach to Predict Lung Tumor Motion during Respiration for Radiation Therapy Applications

During radiotherapy treatment for thoracic and abdomen cancers, for example, lung cancers, respiratory motion moves the target tumor and thus badly affects the accuracy of radiation dose delivery into the target. A real-time image-guided technique can be used to monitor such lung tumor motion for accurate dose delivery, but the system latency up to several hundred milliseconds for repositioning the radiation beam also affects the accuracy. In order to compensate the latency, neural network prediction technique with real-time retraining can be used. We have investigated real-time prediction of 3D time series of lung tumor motion on a classical linear model, perceptron model, and on a class of higher-order neural network model that has more attractive attributes regarding its optimization convergence and computational efficiency. The implemented static feed-forward neural architectures are compared when using gradient descent adaptation and primarily the Levenberg-Marquardt batch algorithm as the ones of the most common and most comprehensible learning algorithms. The proposed technique resulted in fast real-time retraining, so the total computational time on a PC platform was equal to or even less than the real treatment time. For one-second prediction horizon, the proposed techniques achieved accuracy less than one millimeter of 3D mean absolute error in one hundred seconds of total treatment time

Intelligent image-driven motion modelling for adaptive radiotherapy

Internal anatomical motion (e.g. respiration-induced motion) confounds the precise delivery of radiation to target volumes during external beam radiotherapy. Precision is, however, critical to ensure prescribed radiation doses are delivered to the target (tumour) while surrounding healthy tissues are preserved from damage. If the motion itself can be accurately estimated, the treatment plan and/or delivery can be adapted to compensate. Current methods for motion estimation rely either on invasive implanted fiducial markers, imperfect surrogate models based, for example, on external optical measurements or breathing traces, or expensive and rare systems like in-treatment MRI. These methods have limitations such as invasiveness, imperfect modelling, or high costs, underscoring the need for more efficient and accessible approaches to accurately estimate motion during radiation treatment. This research, in contrast, aims to achieve accurate motion prediction using only relatively low-quality, but almost universally available planar X-ray imaging. This is challenging since such images have poor soft tissue contrast and provide only 2D projections through the anatomy. However, our hypothesis suggests that, with strong priors in the form of learnt models for anatomical motion and image appearance, these images can provide sufficient information for accurate 3D motion reconstruction. We initially proposed an end-to-end graph neural network (GNN) architecture aimed at learning mesh regression using a patient-specific template organ geometry and deep features extracted from kV images at arbitrary projection angles. However, this approach proved to be more time-consuming during training. As an alternative, a second framework was proposed, based on a self-attention convolutional neural network (CNN) architecture. This model focuses on learning mappings between deep semantic angle-dependent X-ray image features and the corresponding encoded deformation latent representations of deformed point clouds of the patient's organ geometry. Both frameworks underwent quantitative testing on synthetic respiratory motion scenarios and qualitative assessment on in-treatment images obtained over a full scan series for liver cancer patients. For the first framework, the overall mean prediction errors on synthetic motion test datasets were 0.16±0.13 mm, 0.18±0.19 mm, 0.22±0.34 mm, and 0.12±0.11 mm, with mean peak prediction errors of 1.39 mm, 1.99 mm, 3.29 mm, and 1.16 mm. As for the second framework, the overall mean prediction errors on synthetic motion test datasets were 0.065±0.04 mm, 0.088±0.06 mm, 0.084±0.04 mm, and 0.059±0.04 mm, with mean peak prediction errors of 0.29 mm, 0.39 mm, 0.30 mm, and 0.25 mm

XXII International Conference on Mechanics in Medicine and Biology - Abstracts Book

This book contain the abstracts presented the XXII ICMMB, held in Bologna in September 2022. The abstracts are divided following the sessions scheduled during the conference

Networking Architecture and Key Technologies for Human Digital Twin in Personalized Healthcare: A Comprehensive Survey

Digital twin (DT), refers to a promising technique to digitally and accurately represent actual physical entities. One typical advantage of DT is that it can be used to not only virtually replicate a system's detailed operations but also analyze the current condition, predict future behaviour, and refine the control optimization. Although DT has been widely implemented in various fields, such as smart manufacturing and transportation, its conventional paradigm is limited to embody non-living entities, e.g., robots and vehicles. When adopted in human-centric systems, a novel concept, called human digital twin (HDT) has thus been proposed. Particularly, HDT allows in silico representation of individual human body with the ability to dynamically reflect molecular status, physiological status, emotional and psychological status, as well as lifestyle evolutions. These prompt the expected application of HDT in personalized healthcare (PH), which can facilitate remote monitoring, diagnosis, prescription, surgery and rehabilitation. However, despite the large potential, HDT faces substantial research challenges in different aspects, and becomes an increasingly popular topic recently. In this survey, with a specific focus on the networking architecture and key technologies for HDT in PH applications, we first discuss the differences between HDT and conventional DTs, followed by the universal framework and essential functions of HDT. We then analyze its design requirements and challenges in PH applications. After that, we provide an overview of the networking architecture of HDT, including data acquisition layer, data communication layer, computation layer, data management layer and data analysis and decision making layer. Besides reviewing the key technologies for implementing such networking architecture in detail, we conclude this survey by presenting future research directions of HDT