Development of soft computing and applications in agricultural and biological engineering

Soft computing is a set of “inexact” computing techniques, which are able to model and analyze very complex problems. For these complex problems, more conventional methods have not been able to produce cost-effective, analytical, or complete solutions. Soft computing has been extensively studied and applied in the last three decades for scientific research and engineering computing. In agricultural and biological engineering, researchers and engineers have developed methods of fuzzy logic, artificial neural networks, genetic algorithms, decision trees, and support vector machines to study soil and water regimes related to crop growth, analyze the operation of food processing, and support decision-making in precision farming. This paper reviews the development of soft computing techniques. With the concepts and methods, applications of soft computing in the field of agricultural and biological engineering are presented, especially in the soil and water context for crop management and decision support in precision agriculture. The future of development and application of soft computing in agricultural and biological engineering is discussed

Estimating foliar and wood lignin concentrations, and leaf area index (LAI) of Eucalyptus clones in Zululand using hyperspectral imagery.

Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.To produce high quality paper, lignin should be removed from the pulp. Quantification of lignin concentrations using standard wet chemistry is accurate but time consuming and costly, thus not appropriate for a large number of samples. The ability of hyperspectral remote sensing to predict foliar lignin concentrations could be utilized to estimate wood lignin concentrations if meaningful relationships between wood and foliar chemistry are established. LAI (leaf area index) is a useful parameter that is incorporated into physiological models in forest assessment. Measuring LAI over vast areas is labour intensive and expensive; therefore, LAI has been correlated to vegetation indices using remote sensing. Broadband indices use average spectral information over broad bandwidths; therefore details on the characteristics of the forest canopy are compromised and averaged. Moreover, the broadband indices are known to be highly affected by soil background at low vegetation cover. The aim of this study is to determine foliar and wood lignin concentrations of Eucalyptus clones using hyperspectral lignin indices, and to estimate LAI of Eucalyptus clones from narrowband vegetation indices in Zululand, South Africa Twelve Eucalyptus compartments of ages between 6 and 9 years were selected and 5 trees were randomly sampled from each compartment. A Hyperion image was acquired within ten days of field sampling, SI and LAI measurements. Leaf samples were analyzed in the laboratory using the Klason method as per Tappi standards (Tappi, 1996-1997). Wood samples were analyzed for lignin concentrations using a NIRS (Near Infrared Spectroscopy) instrument. The results showed that there is no general model for predicting wood lignin concentrations from foliar lignin concentrations in Eucalyptus clones of ages between 6 and 9 years. Regression analysis performed for individual compartments and on compartments grouped according to age and SI showed that the relationship between wood and foliar lignin concentration is site and age specific. A Hyperion image was georeferenced and atmospherically corrected using ENVI FLAASH 4.2. The equation to calculate lignin indices for this study was: L1R= ~n5il: A'''''y . 1750 AI680 The relationship between the lignin index and laboratory-measured foliar lignin was significant with R2 = 0.79. This relationship was used to calculate imagepredicted foliar lignin concentrations. Firstly, the compartment specific equations were used to calculate predicted wood lignin concentrations from predicted foliar lignin concentrations. The relationship between the laboratorymeasured wood lignin concentrations and predicted wood lignin concentrations was significant with R2 = 0.91. Secondly, the age and site-specific equations were used to convert foliar lignin concentration to wood lignin concentrations. The wood lignin concentrations predicted from these equations were then compared to the laboratory-measured wood lignin concentrations using linear regression and the R2 was 0.79 with a p-value lower than 0.001. Two bands were used to calculate nine vegetation indices; one band from the near infrared (NIR) region and the other from the short wave infrared (SWIR). Correlations between the Vis and the LAI measurements were generated and . then evaluated to determine the most effective VI for estimating LAI of Eucalyptus plantations. All the results obtained were significant but the NU and MNU showed possible problems of saturation. The MNDVI*SR and SAVI*SR produced the most significant relationships with LAI with R2 values of 0.899 and 0.897 respectively. The standard error for both correlations was very low, at 0.080, and the p-value of 0.001. It was concluded that the Eucalyptus wood lignin concentrations can be predicted using hyperspectral remote sensing, hence wood and foliar lignin concentrations can be fairly accurately mapped across compartments. LAI significantly correlated to eight of the nine selected vegetation indices. Seven Vis are more suitable for LAI estimations in the Eucalyptus plantations in Zululand. The NU and MNU can only be used for LAI estimations in arid or semi-arid areas

Remote Sensing Data Compression

A huge amount of data is acquired nowadays by different remote sensing systems installed on satellites, aircrafts, and UAV. The acquired data then have to be transferred to image processing centres, stored and/or delivered to customers. In restricted scenarios, data compression is strongly desired or necessary. A wide diversity of coding methods can be used, depending on the requirements and their priority. In addition, the types and properties of images differ a lot, thus, practical implementation aspects have to be taken into account. The Special Issue paper collection taken as basis of this book touches on all of the aforementioned items to some degree, giving the reader an opportunity to learn about recent developments and research directions in the field of image compression. In particular, lossless and near-lossless compression of multi- and hyperspectral images still remains current, since such images constitute data arrays that are of extremely large size with rich information that can be retrieved from them for various applications. Another important aspect is the impact of lossless compression on image classification and segmentation, where a reasonable compromise between the characteristics of compression and the final tasks of data processing has to be achieved. The problems of data transition from UAV-based acquisition platforms, as well as the use of FPGA and neural networks, have become very important. Finally, attempts to apply compressive sensing approaches in remote sensing image processing with positive outcomes are observed. We hope that readers will find our book useful and interestin

Remote Sensing as a Precision Farming Tool in the Nile Valley, Egypt

Detecting stress in plants resulting from different stressors including nitrogen deficiency, salinity, moisture, contamination and diseases, is crucial in crop production. In the Nile Valley, crop production is hindered perhaps more fundamentally by issues of water supply and salinity. Predicting stress in crops by conventional methods is tedious, laborious and costly and is perhaps unreliable in providing a spatial context of stress patterns. Accurate and quick monitoring techniques for crop status to detect stress in crops at early growth stages are needed to maximize crop productivity. In this context, remotely sensed data may provide a useful tool in precision farming. This research aims to evaluate the role of in situ hyperspectral and high spatial resolution satellite remote sensing data to detect stress in wheat and maize crops and assess whether moisture induced stress can be distinguished from salinity induced stress spectrally. A series of five greenhouse based experiments on wheat and maize were undertaken subjecting both crops to a range of salinity and moisture stress levels. Spectroradiometry measurements were collected at different growth stages of each crop to assess the relationship between crop biophysical and biochemical properties and reflectance measurements from plant canopies. Additionally, high spatial resolution satellite images including two QuickBird, one ASTER and two SPOT HRV were acquired in south-west Alexandria, Egypt to assess the potential of high spectral and spatial resolution satellite imagery to detect stress in wheat and maize at local and regional scales. Two field work visits were conducted in Egypt to collect ground reference data and coupled with Hyperion imagery acquisition, during winter and summer seasons of 2007 in March (8-30: wheat) and July (12-17: maize). Despite efforts, Hyperion imagery was not acquired due to factors out with the control of this research. Strong significant correlations between crop properties and different vegetation indices derived from both ground based and satellite platforms were observed. RDVI showed a sensitive index to different wheat properties (r > 0.90 with different biophysical properties). In maize, GNDVIbr and Cgreen had strong significant correlations with maize biophysical properties (r > 0.80). PCA showed the possibility to distinguish between moisture and salinity induced stress at the grain filling stages. The results further showed that a combined approach of high (2-5 m) and moderate (15-20) spatial resolution satellite imagery can provide a better mechanistic interpretation of the distribution and sources of stress, despite the typical small size of fields (20-50 m scale). QuickBird imagery successfully detects stress within field and local scales, whereas SPOT HRV imagery is useful in detecting stress at a regional scale, and therefore, can be a robust tool in identifying issues of crop management at a regional scale. Due to the limited spectral capabilities of high spatial resolution images, distinguishing different sources of stress is not directly possible, and therefore, hyperspectral satellite imagery (e.g. Hyperion or HyspIRI) is required to distinguish between moisture and salinity induced stress. It is evident from the results that remotely sensed data acquired by both in situ hyperspectral and high spatial resolution satellite remote sensing can be used as a useful tool in precision farming in the Nile Valley, Egypt. A combined approach of using reliable high spatial and spectral satellite remote sensing data could provide better insight about stress at local and regional scales. Using this technique as a precision farming and management tool will lead to improved crop productivity by limiting stress and consequently provide a valuable tool in combating issues of food supply at a time of rapid population growth

Summaries of the Fifth Annual JPL Airborne Earth Science Workshop. Volume 1: AVIRIS Workshop

This publication is the first of three containing summaries for the Fifth Annual JPL Airborne Earth Science Workshop, held in Pasadena, California, on January 23-26, 1995. The main workshop is divided into three smaller workshops as follows: (1) The Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) workshop, on January 23-24. The summaries for this workshop appear in this volume; (2) The Airborne Synthetic Aperture Radar (AIRSAR) workshop, on January 25-26. The summaries for this workshop appear in Volume 3; and (3) The Thermal Infrared Multispectral Scanner (TIMS) workshop, on January 26. The summaries for this workshop appear in Volume 2

Very High Resolution (VHR) Satellite Imagery: Processing and Applications

Recently, growing interest in the use of remote sensing imagery has appeared to provide synoptic maps of water quality parameters in coastal and inner water ecosystems;, monitoring of complex land ecosystems for biodiversity conservation; precision agriculture for the management of soils, crops, and pests; urban planning; disaster monitoring, etc. However, for these maps to achieve their full potential, it is important to engage in periodic monitoring and analysis of multi-temporal changes. In this context, very high resolution (VHR) satellite-based optical, infrared, and radar imaging instruments provide reliable information to implement spatially-based conservation actions. Moreover, they enable observations of parameters of our environment at greater broader spatial and finer temporal scales than those allowed through field observation alone. In this sense, recent very high resolution satellite technologies and image processing algorithms present the opportunity to develop quantitative techniques that have the potential to improve upon traditional techniques in terms of cost, mapping fidelity, and objectivity. Typical applications include multi-temporal classification, recognition and tracking of specific patterns, multisensor data fusion, analysis of land/marine ecosystem processes and environment monitoring, etc. This book aims to collect new developments, methodologies, and applications of very high resolution satellite data for remote sensing. The works selected provide to the research community the most recent advances on all aspects of VHR satellite remote sensing

Remote Sensing

This dual conception of remote sensing brought us to the idea of preparing two different books; in addition to the first book which displays recent advances in remote sensing applications, this book is devoted to new techniques for data processing, sensors and platforms. We do not intend this book to cover all aspects of remote sensing techniques and platforms, since it would be an impossible task for a single volume. Instead, we have collected a number of high-quality, original and representative contributions in those areas

Agricultural Monitoring System using Images through a LPWAN Network

Internet of things (IoT) has turned into an opportunity to connect millions of devices through communication networks in digital environments. Inside IoT and mainly in the technologies of communication networks, it is possible to find Low Power Wide Area Networks (LPWAN). Within these technologies, there are service platforms in unlicensed frequency bands such as the LoRa Wide Area Network (LoRaWAN). It has features such as low power consumption, long-distance operation between gateway and node, and low data transport capacity. LPWAN networks are not commonly used to transport high data rates as in the case of agricultural images. The main goal of this research is to present a methodology to transport images through LPWAN networks using LoRa modulation. The methodology presented in this thesis is composed of three stages mainly. The first one is image processing and classification process. This stage allows preparing the image in order to give the information to the classifier and separate the normal and abnormal images; i.e. to classify the images under the normal conditions of its representation in contrast with the images that can represent some sick or affectation with the consequent presence of a particular pathology. For this activity. it was used some techniques were used classifiers such as Support Vector Machine SVM, K-means clustering, neuronal networks, deep learning and convolutional neuronal networks. The last one offered the best results in classifying the samples of the images. The second stage consists in a compression technique and reconstruction algorithms. In this stage, a method is developed to process the image and entails the reduction of the high amount of information that an image has in its normal features with the goal to transport the lowest amount of information. For this purpose, a technique will be presented for the representation of the information of an image in a common base that improves the reduction process of the information. For this activity, the evaluated components were Wavelet, DCT-2D and Kronecker algorithms. The best results were obtained by Wavelet Transform. On the other hand, the compres- sion process entails a series of iterations in the vector information, therefore, each iteration is a possibility to reduce that vector until a value with a minimum PSNR (peak signal to noise ratio) that allows rebuilding the original vector. In the reconstruction process, Iterative Hard Thresholding (IHT), Ortogonal MAtching Pur- suit (OMP), Gradient Projection for Sparse Reconstruction (GPSR)and Step Iterative Shrinage/Thresholding (Twist) algorithms were evaluated. Twist showed the best performance in the results. Finally, in the third stage, LoRa modulation is implemented through the creation of LoRa symbols in Matlab with the compressed information. The symbols were delivered for transmission to Software Defined Radio (SDR). In the receptor, a SDR device receives the signal, which is converted into symbols that are in turn converted in an information vector. Then, the reconstruction process is carried out following the description in the last part of stage 2 - compression technique and reconstruction algorithms, which is described in more detailed in chapter 3, section 3.2. Finally, the image reconstructed is presented. The original image and the result image were compared in order to find the differences. This comparison used Peak Signal-to-Noise Ratio (PSNR) feature in order to get the fidelity of the reconstructed image with respect of the original image. In the receptor node, it is possible to observe the pathology of the leaf. The methodology is particularly applied for monitoring abnormal leaves samples in potato crops. This work allows finding a methodology to communicate images through LPWAN using the LoRa modulation technique. In this work, a framework was used to classify the images, then, to process them in order to reduce the amount of data, to establish communication between a transmitter and a receiver through a wireless communication system and finally, in the receptor, to obtain a picture that shows the particularity of the pathology in an agricultural crop.Gobernación de Boyacá, Colfuturo, Colciencias, Universidad Santo Tomás, Pontificia Universidad JaverianaInternet of things (IoT) has turned into an opportunity to connect millions of devices through communication networks in digital environments. Inside IoT and mainly in the technologies of communication networks, it is possible to find Low Power Wide Area Networks (LPWAN). Within these technologies, there are service platforms in unlicensed frequency bands such as the LoRa Wide Area Network (LoRaWAN). It has features such as low power consumption, long-distance operation between gateway and node, and low data transport capacity. LPWAN networks are not commonly used to transport high data rates as in the case of agricultural images. The main goal of this research is to present a methodology to transport images through LPWAN networks using LoRa modulation. The methodology presented in this thesis is composed of three stages mainly. The first one is image processing and classification process. This stage allows preparing the image in order to give the information to the classifier and separate the normal and abnormal images; i.e. to classify the images under the normal conditions of its representation in contrast with the images that can represent some sick or affectation with the consequent presence of a particular pathology. For this activity. it was used some techniques were used classifiers such as Support Vector Machine SVM, K-means clustering, neuronal networks, deep learning and convolutional neuronal networks. The last one offered the best results in classifying the samples of the images. The second stage consists in a compression technique and reconstruction algorithms. In this stage, a method is developed to process the image and entails the reduction of the high amount of information that an image has in its normal features with the goal to transport the lowest amount of information. For this purpose, a technique will be presented for the representation of the information of an image in a common base that improves the reduction process of the information. For this activity, the evaluated components were Wavelet, DCT-2D and Kronecker algorithms. The best results were obtained by Wavelet Transform. On the other hand, the compres- sion process entails a series of iterations in the vector information, therefore, each iteration is a possibility to reduce that vector until a value with a minimum PSNR (peak signal to noise ratio) that allows rebuilding the original vector. In the reconstruction process, Iterative Hard Thresholding (IHT), Ortogonal MAtching Pur- suit (OMP), Gradient Projection for Sparse Reconstruction (GPSR)and Step Iterative Shrinage/Thresholding (Twist) algorithms were evaluated. Twist showed the best performance in the results. Finally, in the third stage, LoRa modulation is implemented through the creation of LoRa symbols in Matlab with the compressed information. The symbols were delivered for transmission to Software Defined Radio (SDR). In the receptor, a SDR device receives the signal, which is converted into symbols that are in turn converted in an information vector. Then, the reconstruction process is carried out following the description in the last part of stage 2 - compression technique and reconstruction algorithms, which is described in more detailed in chapter 3, section 3.2. Finally, the image reconstructed is presented. The original image and the result image were compared in order to find the differences. This comparison used Peak Signal-to-Noise Ratio (PSNR) feature in order to get the fidelity of the reconstructed image with respect of the original image. In the receptor node, it is possible to observe the pathology of the leaf. The methodology is particularly applied for monitoring abnormal leaves samples in potato crops. This work allows finding a methodology to communicate images through LPWAN using the LoRa modulation technique. In this work, a framework was used to classify the images, then, to process them in order to reduce the amount of data, to establish communication between a transmitter and a receiver through a wireless communication system and finally, in the receptor, to obtain a picture that shows the particularity of the pathology in an agricultural crop.Doctor en IngenieríaDoctoradohttps://orcid.org/0000-0002-3554-1531https://scholar.google.com/citations?user=5_dx9REAAAAJ&hl=eshttps://scienti.minciencias.gov.co/cvlac/EnRecursoHumano/query.d

Book of short Abstracts of the 11th International Symposium on Digital Earth

The Booklet is a collection of accepted short abstracts of the ISDE11 Symposium

Assessing spring phenology of a temperate woodland : a multiscale comparison of ground, unmanned aerial vehicle and Landsat satellite observations

PhD ThesisVegetation phenology is the study of plant natural life cycle stages. Plant phenological events are related to carbon, energy and water cycles within terrestrial ecosystems, operating from local to global scales. As plant phenology events are highly sensitive to climate fluctuations, the timing of these events has been used as an independent indicator of climate change. The monitoring of forest phenology in a cost-effective manner, at a fine spatial scale and over relatively large areas remains a significant challenge. To address this issue, unmanned aerial vehicles (UAVs) appear to be a potential new platform for forest phenology monitoring. The aim of this research is to assess the potential of UAV data to track the temporal dynamics of spring phenology, from the individual tree to woodland scale, and to cross-compare UAV results against ground and satellite observations, in order to better understand characteristics of UAV data and assess potential for use in validation of satellite-derived phenology. A time series of UAV data were acquired in tandem with an intensive ground campaign during the spring season of 2015, over Hanging Leaves Wood, Northumberland, UK. The radiometric quality of the UAV imagery acquired by two consumer-grade cameras was assessed, in terms of the ability to retrieve reflectance and Normalised Difference Vegetation Index (NDVI), and successfully validated against ground (0.84≤R2≥0.96) and Landsat (0.73≤R2≥0.89) measurements, but only NDVI resulted in stable time series. The start (SOS), middle (MOS) and end (EOS) of spring season dates were estimated at an individual tree-level using UAV time series of NDVI and Green Chromatic Coordinate (GCC), with GCC resulting in a clearer and stronger seasonal signal at a tree crown scale. UAV-derived SOS could be predicted more accurately than MOS and EOS, with an accuracy of less than 1 week for deciduous woodland and within 2 weeks for evergreen. The UAV data were used to map phenological events for individual trees across the whole woodland, demonstrating that contrasting canopy phenological events can occur within the extent of a single Landsat pixel. This accounted for the poor relationships found between UAV- and Landsat-derived phenometrics (R2<0.45) in this study. An opportunity is now available to track very fine scale land surface changes over contiguous vegetation communities, information which could improve characterization of vegetation phenology at multiple scales.The Science without Borders program, managed by CAPES-Brazil (Coordenação de Aperfeiçoamento de Pessoal de Nível Superior)