Improving Transitive Embeddings in Neural Reasoning Tasks via Knowledge-Based Policy Networks

This paper proposes an approach to embed ontologies in order to deal with reasoning based on transitive relations, using the datasets provided for the SemRec Challenge at ISWC 2022. Knowledge Graph Embedding (KGE) methods provide a low-dimensional representation of the entities and relationships extracted from the knowledge graph and have been successfully used for a variety of applications such as question answering, reasoning, inference, and link prediction. However, most KGE methods cannot handle the underlying constraints and characteristics of ontologies, preventing them from performing important reasoning tasks such as subsumption and instance checking. We propose to extend translation-based embedding methods to include subsumption and instance checking reasoning by leveraging transitive relations. Experimental results show that our approach can achieve Hits@10 as high as %73 using samples generated by a policy network

Relations as patterns: bridging the gap between OBO and OWL.

BACKGROUND: Most biomedical ontologies are represented in the OBO Flatfile Format, which is an easy-to-use graph-based ontology language. The semantics of the OBO Flatfile Format 1.2 enforces a strict predetermined interpretation of relationship statements between classes. It does not allow flexible specifications that provide better approximations of the intuitive understanding of the considered relations. If relations cannot be accurately expressed then ontologies built upon them may contain false assertions and hence lead to false inferences. Ontologies in the OBO Foundry must formalize the semantics of relations according to the OBO Relationship Ontology (RO). Therefore, being able to accurately express the intended meaning of relations is of crucial importance. Since the Web Ontology Language (OWL) is an expressive language with a formal semantics, it is suitable to de ne the meaning of relations accurately. RESULTS: We developed a method to provide definition patterns for relations between classes using OWL and describe a novel implementation of the RO based on this method. We implemented our extension in software that converts ontologies in the OBO Flatfile Format to OWL, and also provide a prototype to extract relational patterns from OWL ontologies using automated reasoning. The conversion software is freely available at http://bioonto.de/obo2owl, and can be accessed via a web interface. CONCLUSIONS: Explicitly defining relations permits their use in reasoning software and leads to a more flexible and powerful way of representing biomedical ontologies. Using the extended langua0067e and semantics avoids several mistakes commonly made in formalizing biomedical ontologies, and can be used to automatically detect inconsistencies. The use of our method enables the use of graph-based ontologies in OWL, and makes complex OWL ontologies accessible in a graph-based form. Thereby, our method provides the means to gradually move the representation of biomedical ontologies into formal knowledge representation languages that incorporates an explicit semantics. Our method facilitates the use of OWL-based software in the back-end while ontology curators may continue to develop ontologies with an OBO-style front-end

Knowledge formalization in experience feedback processes : an ontology-based approach

Because of the current trend of integration and interoperability of industrial systems, their size and complexity continue to grow making it more difficult to analyze, to understand and to solve the problems that happen in their organizations. Continuous improvement methodologies are powerful tools in order to understand and to solve problems, to control the effects of changes and finally to capitalize knowledge about changes and improvements. These tools involve suitably represent knowledge relating to the concerned system. Consequently, knowledge management (KM) is an increasingly important source of competitive advantage for organizations. Particularly, the capitalization and sharing of knowledge resulting from experience feedback are elements which play an essential role in the continuous improvement of industrial activities. In this paper, the contribution deals with semantic interoperability and relates to the structuring and the formalization of an experience feedback (EF) process aiming at transforming information or understanding gained by experience into explicit knowledge. The reuse of such knowledge has proved to have significant impact on achieving themissions of companies. However, the means of describing the knowledge objects of an experience generally remain informal. Based on an experience feedback process model and conceptual graphs, this paper takes domain ontology as a framework for the clarification of explicit knowledge and know-how, the aim of which is to get lessons learned descriptions that are significant, correct and applicable

Predicting Network Attacks Using Ontology-Driven Inference

Graph knowledge models and ontologies are very powerful modeling and re asoning tools. We propose an effective approach to model network attacks and attack prediction which plays important roles in security management. The goals of this study are: First we model network attacks, their prerequisites and consequences using knowledge representation methods in order to provide description logic reasoning and inference over attack domain concepts. And secondly, we propose an ontology-based system which predicts potential attacks using inference and observing information which provided by sensory inputs. We generate our ontology and evaluate corresponding methods using CAPEC, CWE, and CVE hierarchical datasets. Results from experiments show significant capability improvements comparing to traditional hierarchical and relational models. Proposed method also reduces false alarms and improves intrusion detection effectiveness.Comment: 9 page

Challenges in Bridging Social Semantics and Formal Semantics on the Web

This paper describes several results of Wimmics, a research lab which names stands for: web-instrumented man-machine interactions, communities, and semantics. The approaches introduced here rely on graph-oriented knowledge representation, reasoning and operationalization to model and support actors, actions and interactions in web-based epistemic communities. The re-search results are applied to support and foster interactions in online communities and manage their resources

Higher-order Representation and Reasoning for Automated Ontology Evolution

Abstract: The GALILEO system aims at realising automated ontology evolution. This is necessary to enable intelligent agents to manipulate their own knowledge autonomously and thus reason and communicate effectively in open, dynamic digital environments characterised by the heterogeneity of data and of representation languages. Our approach is based on patterns of diagnosis of faults detected across multiple ontologies. Such patterns allow to identify the type of repair required when conflicting ontologies yield erroneous inferences. We assume that each ontology is locally consistent, i.e. inconsistency arises only across ontologies when they are merged together. Local consistency avoids the derivation of uninteresting theorems, so the formula for diagnosis can essentially be seen as an open theorem over the ontologies. The system’s application domain is physics; we have adopted a modular formalisation of physics, structured by means of locales in Isabelle, to perform modular higher-order reasoning, and visualised by means of development graphs.

Drawing OWL 2 ontologies with Eddy the editor

In this paper we introduce Eddy, a new open-source tool for the graphical editing of OWL~2 ontologies. Eddy is specifically designed for creating ontologies in Graphol, a completely visual ontology language that is equivalent to OWL~2. Thus, in Eddy ontologies are easily drawn as diagrams, rather than written as sets of formulas, as commonly happens in popular ontology design and engineering environments. This makes Eddy particularly suited for usage by people who are more familiar with diagramatic languages for conceptual modeling rather than with typical ontology formalisms, as is often required in non-academic and industrial contexts. Eddy provides intuitive functionalities for specifying Graphol diagrams, guarantees their syntactic correctness, and allows for exporting them in standard OWL 2 syntax. A user evaluation study we conducted shows that Eddy is perceived as an easy and intuitive tool for ontology specification