Relational visual cluster validity

The assessment of cluster validity plays a very important role in cluster analysis. Most commonly used cluster validity methods are based on statistical hypothesis testing or finding the best clustering scheme by computing a number of different cluster validity indices. A number of visual methods of cluster validity have been produced to display directly the validity of clusters by mapping data into two- or three-dimensional space. However, these methods may lose too much information to correctly estimate the results of clustering algorithms. Although the visual cluster validity (VCV) method of Hathaway and Bezdek can successfully solve this problem, it can only be applied for object data, i.e. feature measurements. There are very few validity methods that can be used to analyze the validity of data where only a similarity or dissimilarity relation exists – relational data. To tackle this problem, this paper presents a relational visual cluster validity (RVCV) method to assess the validity of clustering relational data. This is done by combining the results of the non-Euclidean relational fuzzy c-means (NERFCM) algorithm with a modification of the VCV method to produce a visual representation of cluster validity. RVCV can cluster complete and incomplete relational data and adds to the visual cluster validity theory. Numeric examples using synthetic and real data are presente

Median evidential c-means algorithm and its application to community detection

Median clustering is of great value for partitioning relational data. In this paper, a new prototype-based clustering method, called Median Evidential C-Means (MECM), which is an extension of median c-means and median fuzzy c-means on the theoretical framework of belief functions is proposed. The median variant relaxes the restriction of a metric space embedding for the objects but constrains the prototypes to be in the original data set. Due to these properties, MECM could be applied to graph clustering problems. A community detection scheme for social networks based on MECM is investigated and the obtained credal partitions of graphs, which are more refined than crisp and fuzzy ones, enable us to have a better understanding of the graph structures. An initial prototype-selection scheme based on evidential semi-centrality is presented to avoid local premature convergence and an evidential modularity function is defined to choose the optimal number of communities. Finally, experiments in synthetic and real data sets illustrate the performance of MECM and show its difference to other methods

Partitioning Relational Matrices of Similarities or Dissimilarities using the Value of Information

In this paper, we provide an approach to clustering relational matrices whose entries correspond to either similarities or dissimilarities between objects. Our approach is based on the value of information, a parameterized, information-theoretic criterion that measures the change in costs associated with changes in information. Optimizing the value of information yields a deterministic annealing style of clustering with many benefits. For instance, investigators avoid needing to a priori specify the number of clusters, as the partitions naturally undergo phase changes, during the annealing process, whereby the number of clusters changes in a data-driven fashion. The global-best partition can also often be identified.Comment: Submitted to the IEEE International Conference on Acoustics, Speech, and Signal Processing (ICASSP

Unsupervised and semi-supervised clustering with learnable cluster dependent kernels.

Despite the large number of existing clustering methods, clustering remains a challenging task especially when the structure of the data does not correspond to easily separable categories, and when clusters vary in size, density and shape. Existing kernel based approaches allow to adapt a specific similarity measure in order to make the problem easier. Although good results were obtained using the Gaussian kernel function, its performance depends on the selection of the scaling parameter. Moreover, since one global parameter is used for the entire data set, it may not be possible to find one optimal scaling parameter when there are large variations between the distributions of the different clusters in the feature space. One way to learn optimal scaling parameters is through an exhaustive search of one optimal scaling parameter for each cluster. However, this approach is not practical since it is computationally expensive especially when the data includes a large number of clusters and when the dynamic range of possible values of the scaling parameters is large. Moreover, it is not trivial to evaluate the resulting partition in order to select the optimal parameters. To overcome this limitation, we introduce two new fuzzy relational clustering techniques that learn cluster dependent Gaussian kernels. The first algorithm called clustering and Local Scale Learning algorithm (LSL) minimizes one objective function for both the optimal partition and for cluster dependent scaling parameters that reflect the intra-cluster characteristics of the data. The second algorithm, called Fuzzy clustering with Learnable Cluster dependent Kernels (FLeCK) learns the scaling parameters by optimizing both the intra-cluster and the inter-cluster dissimilarities. Consequently, the learned scale parameters reflect the relative density, size, and position of each cluster with respect to the other clusters. We also introduce semi-supervised versions of LSL and FLeCK. These algorithms generate a fuzzy partition of the data and learn the optimal kernel resolution of each cluster simultaneously. We show that the incorporation of a small set of constraints can guide the clustering process to better learn the scaling parameters and the fuzzy memberships in order to obtain a better partition of the data. In particular, we show that the partial supervision is even more useful on real high dimensional data sets where the algorithms are more susceptible to local minima. All of the proposed algorithms are optimized iteratively by dynamically updating the partition and the scaling parameter in each iteration. This makes these algorithms simple and fast. Moreover, our algorithms are formulated to work on relational data. This makes them applicable to data where objects cannot be represented by vectors or when clusters of similar objects cannot be represented efficiently by a single prototype. Our extensive experiments show that FLeCK and SS-FLeCK outperform existing algorithms. In particular, we show that when data include clusters with various inter-cluster and intra-cluster distances, learning cluster dependent kernel is crucial in obtaining a good partition

Unsupervised and semi-supervised fuzzy clustering with multiple kernels.

For real-world clustering tasks, the input data is typically not easily separable due to the highly complex data structure or when clusters vary in size, density and shape. Recently, kernel-based clustering has been proposed to perform clustering in a higher-dimensional feature space spanned by embedding maps and corresponding kernel functions. Although good results were obtained using the Gaussian kernel function, its performance depends on the selection of the scaling parameter among an extensive range of possibilities. This step is often heavily influenced by prior knowledge about the data and by the patterns we expect to discover. Unfortunately, it is often unclear which kernels are more suitable for a particular task. The problem is aggravated for many real-world clustering applications, in which the distributions of the different clusters in the feature space exhibit large variations. Thus, in the absence of a priori knowledge, a single kernel selected from a predefined group is sometimes insufficient to represent the data. One way to learn optimal scaling parameters is through an exhaustive search of one optimal scaling parameter for each cluster. However, this approach is not practical since it is computationally expensive, especially when the data includes a large number of clusters and when the dynamic range of possible values of the scaling parameters is large. Moreover, the evaluation of the resulting partition in order to select the optimal parameters is not an easy task. To overcome the above drawbacks, we introduce two novel fuzzy clustering techniques that use Multiple Kernel Learning to provide an elegant solution for parameter selection. The Fuzzy C-Means with Multiple Kernels algorithm (FCMK) simultaneously finds the optimal partition and the cluster-dependent kernel combination weights that reflect the intrinsic structure of the data. The Relational Fuzzy Clustering with Multiple Kernels (RFCMK) learns the kernel combination weights by optimizing the relational dissimilarities. Consequently, the learned kernel combination weights reflect the relative density, size, and position of each cluster with respect to the other clusters. We also extended FCMK and RFCMK to the semi-supervised paradigms. We show that the incorporation of prior knowledge in the unsupervised clustering task in the form of a small set of constraints on which instances should or should not reside in the same cluster, guides the unsupervised approaches to a better partitioning of the data and avoid local minima, especially for high dimensional real world data. All of the proposed algorithms are optimized iteratively by dynamically updating the partition and the kernel combination weights in each iteration. This makes these algorithms simple and fast. Moreover, our algorithms are formulated to work on both vector and relational data. This makes them applicable to data where objects cannot be represented by vectors or when clusters of similar objects cannot be represented efficiently by a single prototype. We also introduced two relational fuzzy clustering with multiple kernel algorithms for large data to deal with the scalability issue of RFCMK. The random sample and extend RFCMK (rseRFCMK) computes cluster prototypes from a smaller sample of randomly selected objects, and then extends the partition to the remainder of the data. The single pass RFCMK (spRFCMK) sequentially loads manageable sized chunks, clustering the chunks in a single pass, and then combining the results from each chunk. Our extensive experiments show that RFCMK and SS-RFCMK outperform existing algorithms. In particular, we show that when data include clusters with various intrinsic structures and densities, learning kernel weights that vary over clusters is crucial in obtaining a good partition

How Many Dissimilarity/Kernel Self Organizing Map Variants Do We Need?

In numerous applicative contexts, data are too rich and too complex to be represented by numerical vectors. A general approach to extend machine learning and data mining techniques to such data is to really on a dissimilarity or on a kernel that measures how different or similar two objects are. This approach has been used to define several variants of the Self Organizing Map (SOM). This paper reviews those variants in using a common set of notations in order to outline differences and similarities between them. It discusses the advantages and drawbacks of the variants, as well as the actual relevance of the dissimilarity/kernel SOM for practical applications

A kernel-based framework for learning graded relations from data

Driven by a large number of potential applications in areas like bioinformatics, information retrieval and social network analysis, the problem setting of inferring relations between pairs of data objects has recently been investigated quite intensively in the machine learning community. To this end, current approaches typically consider datasets containing crisp relations, so that standard classification methods can be adopted. However, relations between objects like similarities and preferences are often expressed in a graded manner in real-world applications. A general kernel-based framework for learning relations from data is introduced here. It extends existing approaches because both crisp and graded relations are considered, and it unifies existing approaches because different types of graded relations can be modeled, including symmetric and reciprocal relations. This framework establishes important links between recent developments in fuzzy set theory and machine learning. Its usefulness is demonstrated through various experiments on synthetic and real-world data.Comment: This work has been submitted to the IEEE for possible publication. Copyright may be transferred without notice, after which this version may no longer be accessibl

Relational Data Mining Through Extraction of Representative Exemplars

With the growing interest on Network Analysis, Relational Data Mining is becoming an emphasized domain of Data Mining. This paper addresses the problem of extracting representative elements from a relational dataset. After defining the notion of degree of representativeness, computed using the Borda aggregation procedure, we present the extraction of exemplars which are the representative elements of the dataset. We use these concepts to build a network on the dataset. We expose the main properties of these notions and we propose two typical applications of our framework. The first application consists in resuming and structuring a set of binary images and the second in mining co-authoring relation in a research team