A data estimation for failing nodes using fuzzy logic with integrated microcontroller in wireless sensor networks

Continuous data transmission in wireless sensor networks (WSNs) is one of the most important characteristics which makes sensors prone to failure. a backup strategy needs to co-exist with the infrastructure of the network to assure that no data is missing. The proposed system relies on a backup strategy of building a history file that stores all collected data from these nodes. This file is used later on by fuzzy logic to estimate missing data in case of failure. An easily programmable microcontroller unit is equipped with a data storage mechanism used as cost worthy storage media for these data. An error in estimation is calculated constantly and used for updating a reference “optimal table” that is used in the estimation of missing data. The error values also assure that the system doesn’t go into an incremental error state. This paper presents a system integrated of optimal data table, microcontroller, and fuzzy logic to estimate missing data of failing sensors. The adapted approach is guided by the minimum error calculated from previously collected data. Experimental findings show that the system has great potentials of continuing to function with a failing node, with very low processing capabilities and storage requirements

Logic mining with hybridized 3-satisfiability fuzzy logic and harmony search algorithm in Hopfield neural network for Covid-19 death cases

Since the beginning of the Covid-19 infections in December 2019, the virus has emerged as the most lethally contagious in world history. In this study, the Hopfield neural network and logic mining technique merged to extract data from a model to provide insight into the link between factors influencing the Covid-19 datasets. The suggested technique uses a 3-satisfiability-based reverse analysis (3SATRA) and a hybridized Hopfield neural network to identify the relationships relating to the variables in a set of Covid-19 data. The list of data is to identify the relationships between the key characteristics that lead to a more prolonged time of death of the patients. The learning phase of the hybridized 3-satisfiability (3SAT) Hopfield neural network and the reverse analysis (RA) method has been optimized using a new method of fuzzy logic and two metaheuristic algorithms: Genetic and harmony search algorithms. The performance assessment metrics, such as energy analysis, error analysis, computational time, and accuracy, were computed at the end of the algorithms. The multiple performance metrics demonstrated that the 3SATRA with the fuzzy logic metaheuristic algorithm model outperforms other logic mining models. Furthermore, the experimental findings have demonstrated that the best-induced logic identifies important variables to detect critical patients that need more attention. In conclusion, the results validate the efficiency of the suggested approach, which occurs from the fact that the new version has a positive effect

Fuzzy PD control of an optically guided long reach robot

This thesis describes the investigation and development of a fuzzy controller for a manipulator with a single flexible link. The novelty of this research is due to the fact that the controller devised is suitable for flexible link manipulators with a round cross section. Previous research has concentrated on control of flexible slender structures that are relatively easier to model as the vibration effects of torsion can be ignored. Further novelty arises due to the fact that this is the first instance of the application of fuzzy control in the optical Tip Feedback Sensor (TFS) based configuration. A design methodology has been investigated to develop a fuzzy controller suitable for application in a safety critical environment such as the nuclear industry. This methodology provides justification for all the parameters of the fuzzy controller including membership fUllctions, inference and defuzzification techniques and the operators used in the algorithm. Using the novel modified phase plane method investigated in this thesis, it is shown that the derivation of complete, consistent and non-interactive rules can be achieved. This methodology was successfully applied to the derivation of fuzzy rules even when the arm was subjected to different payloads. The design approach, that targeted real-time embedded control applicat.ions from the outset, results in a controller implementation that is suitable for cheaper CPU constrained and memory challenged embedded processors. The controller comprises of a fuzzy supervisor that is used to alter the derivative term of a linear classical Proportional + Derivative (PD) controller. The derivative term is updated in relation to the measured tip error and its derivative obtained through the TFS based configuration. It is shown that by adding 'intelligence' to the control loop in this way, the performance envelope of the classical controller can be enhanced. A 128% increase in payload, 73.5% faster settling time and a reduction of steady state of over 50% is achieved using fuzzy control over its classical counterpart

Protein Tertiary Model Assessment Using Granular Machine Learning Techniques

The automatic prediction of protein three dimensional structures from its amino acid sequence has become one of the most important and researched fields in bioinformatics. As models are not experimental structures determined with known accuracy but rather with prediction it’s vital to determine estimates of models quality. We attempt to solve this problem using machine learning techniques and information from both the sequence and structure of the protein. The goal is to generate a machine that understands structures from PDB and when given a new model, predicts whether it belongs to the same class as the PDB structures (correct or incorrect protein models). Different subsets of PDB (protein data bank) are considered for evaluating the prediction potential of the machine learning methods. Here we show two such machines, one using SVM (support vector machines) and another using fuzzy decision trees (FDT). First using a preliminary encoding style SVM could get around 70% in protein model quality assessment accuracy, and improved Fuzzy Decision Tree (IFDT) could reach above 80% accuracy. For the purpose of reducing computational overhead multiprocessor environment and basic feature selection method is used in machine learning algorithm using SVM. Next an enhanced scheme is introduced using new encoding style. In the new style, information like amino acid substitution matrix, polarity, secondary structure information and relative distance between alpha carbon atoms etc is collected through spatial traversing of the 3D structure to form training vectors. This guarantees that the properties of alpha carbon atoms that are close together in 3D space and thus interacting are used in vector formation. With the use of fuzzy decision tree, we obtained a training accuracy around 90%. There is significant improvement compared to previous encoding technique in prediction accuracy and execution time. This outcome motivates to continue to explore effective machine learning algorithms for accurate protein model quality assessment. Finally these machines are tested using CASP8 and CASP9 templates and compared with other CASP competitors, with promising results. We further discuss the importance of model quality assessment and other information from proteins that could be considered for the same

Simulations and Modelling for Biological Invasions

Biological invasions are characterized by the movement of organisms from their native geographic region to new, distinct regions in which they may have significant impacts. Biological invasions pose one of the most serious threats to global biodiversity, and hence significant resources are invested in predicting, preventing, and managing them. Biological systems and processes are typically large, complex, and inherently difficult to study naturally because of their immense scale and complexity. Hence, computational modelling and simulation approaches can be taken to study them. In this dissertation, I applied computer simulations to address two important problems in invasion biology. First, in invasion biology, the impact of genetic diversity of introduced populations on their establishment success is unknown. We took an individual-based modelling approach to explore this, leveraging an ecosystem simulation called EcoSim to simulate biological invasions. We conducted reciprocal transplants of prey individuals across two simulated environments, over a gradient of genetic diversity. Our simulation results demonstrated that a harsh environment with low and spatially-varying resource abundance mediated a relationship between genetic diversity and short-term establishment success of introduced populations rather than the degree of difference between native and introduced ranges. We also found that reducing Allee effects by maintaining compactness, a measure of spatial density, was key to the establishment success of prey individuals in EcoSim, which were sexually reproducing. Further, we found evidence of a more complex relationship between genetic diversity and long-term establishment success, assuming multiple introductions were occurring. Low-diversity populations seemed to benefit more strongly from multiple introductions than high-diversity populations. Our results also corroborated the evolutionary imbalance hypothesis: the environment that yielded greater diversity produced better invaders and itself was less invasible. Finally, our study corroborated a mechanical explanation for the evolutionary imbalance hypothesis – the populations evolved in a more intense competitive environment produced better invaders. Secondly, an important advancement in invasion biology is the use of genetic barcoding or metabarcoding, in conjunction with next-generation sequencing, as a potential means of early detection of aquatic introduced species. Barcoding and metabarcoding invariably requires some amount of computational DNA sequence processing. Unfortunately, optimal processing parameters are not known in advance and the consequences of suboptimal parameter selection are poorly understood. We aimed to determine the optimal parameterization of a common sequence processing pipeline for both early detection of aquatic nonindigenous species and conducting species richness assessments. We then aimed to determine the performance of optimized pipelines in a simulated inoculation of sequences into community samples. We found that early detection requires relatively lenient processing parameters. Further, optimality depended on the research goal – what was optimal for early detection was suboptimal for estimating species richness and vice-versa. Finally, with optimal parameter selection, fewer than 11 target sequences were required in order to detect 90% of nonindigenous species

A real-time data mining technique applied for critical ECG rhythm on handheld device

Sudden cardiac arrest is often caused by ventricular arrhythmias and these episodes can lead to death for patients with chronic heart disease. Hence, detection of such arrhythmia is crucial in mobile ECG monitoring. In this research, a systematic study is carried out to investigate the possible limitations that are preventing the realisation of a real-time ECG arrhythmia data-mining algorithm suitable for application on mobile devices. Based on the findings, a computationally lightweight algorithm is devised and tested. Ventricular tachycardia (VT) is the most common type of ventricular arrhythmias and is also the deadliest.. A ventricular tachycardia (VT) episode is due to a disorder ofthe regular contractions ofthe heart. It occurs when the human heart ventricles generate a rapid heartbeat which disrupts the regular physiology cycle. The normal sinus rhythm (NSR) of a regular human heart beat signal has its signature PQRST waveform and in regular pattern. Whereas, the characteristics of a ventricular tachycardia (VT) signal waveforms are short R-R intervals, widen QRS duration and the absence of P-waves. Each type of ECG arrhythmia previously mentioned has a unique waveform signature that can be exploited as features to be used for the realization of an automated ECG analysis application. In order to extract this known ECG waveform feature, a time-domain analysis is proposed for feature extraction. Cross-correlation allows the computation of a co-efficient that quantifies the similarity between two times-series. Hence, by cross-correlating known ECG waveform templates with an unknown ECG signal, the coefficient can indicate the similarities. In previous published work, a preliminary study was carried out. The cross-correlation coefficient wave (CCW) technique was introduced for feature extraction. The outcome ofthis work presents CCW as a promising feature to differentiate between NSR, VT and Vfib signals. Moreover, cross-correlation computation does not require high computational overhead. Next, an automated detection algorithm requires a classification mechanism to make sense of the feature extracted. A further study is conducted and published, a fuzzy set k-NN classifier was introduced for the classification of CCW feature extracted from ECG signal segments. A training set of size 180 is used. The outcome of the study indicates that the computationally light-weight fuzzy k-NN classifier can reliably classify between NSR and VT signals, the class detection rate is low for classifying Vfib signal using the fuzzy k-NN classifier. Hence, a modified algorithm known as fuzzy hybrid classifier is proposed. By implementing an expert knowledge based fuzzy inference system for classification of ECG signal; the Vfib signal detection rate was improved. The comparison outcome was that the hybrid fuzzy classifier is able to achieve 91.1% correct rate, 100% sensitivity and 100% specificity. The previously mentioned result outperforms the compared classifiers. The proposed detection and classification algorithm is able to achieve high accuracy in analysing ECG signal feature of NSR, VT and Vfib nature. Moreover, the proposed classifier is successfully implemented on a smart mobile device and it is able to perform data-mining of the ECG signal with satisfiable results