Enhancing Energy Production with Exascale HPC Methods

High Performance Computing (HPC) resources have become the key actor for achieving more ambitious challenges in many disciplines. In this step beyond, an explosion on the available parallelism and the use of special purpose processors are crucial. With such a goal, the HPC4E project applies new exascale HPC techniques to energy industry simulations, customizing them if necessary, and going beyond the state-of-the-art in the required HPC exascale simulations for different energy sources. In this paper, a general overview of these methods is presented as well as some specific preliminary results.The research leading to these results has received funding from the European Union's Horizon 2020 Programme (2014-2020) under the HPC4E Project (www.hpc4e.eu), grant agreement n° 689772, the Spanish Ministry of Economy and Competitiveness under the CODEC2 project (TIN2015-63562-R), and from the Brazilian Ministry of Science, Technology and Innovation through Rede Nacional de Pesquisa (RNP). Computer time on Endeavour cluster is provided by the Intel Corporation, which enabled us to obtain the presented experimental results in uncertainty quantification in seismic imagingPostprint (author's final draft

Applying future Exascale HPC methodologies in the energy sector

The appliance of new exascale HPC techniques to energy industry simulations is absolutely needed nowadays. In this sense, the common procedure is to customize these techniques to the specific energy sector they are of interest in order to go beyond the state-of-the-art in the required HPC exascale simulations. With this aim, the HPC4E project is developing new exascale methodologies to three different energy sources that are the present and the future of energy: wind energy production and design, efficient combustion systems for biomass-derived fuels (biogas), and exploration geophysics for hydrocarbon reservoirs. In this work, the general exascale advances proposed as part of HPC4E and its outcome to specific results in different domains are presented.The research leading to these results has received funding from the European Union's Horizon 2020 Programme (2014-2020) under the HPC4E Project (www.hpc4e.eu), grant agreement n° 689772, the Spanish Ministry of Economy and Competitiveness under the CODEC2 project (TIN2015-63562-R), and from the Brazilian Ministry of Science, Technology and Innovation through Rede Nacional de Pesquisa (RNP). Computer time on Endeavour cluster is provided by the Intel Corporation, which enabled us to obtain the presented experimental results in uncertainty quantification in seismic imaging.Postprint (author's final draft

Parallel fast fourier transform in SPMD style of cilk

Copyright © 2019 Inderscience Enterprises Ltd. In this paper, we propose a parallel one-dimensional non-recursive fast Fourier transform (FFT) program based on conventional Cooley-Tukey’s algorithm written in C using Cilk in single program multiple data (SPMD) style. As a highly compact designed code, this code is compared with a highly tuned parallel recursive fast Fourier transform (FFT) using Cilk, which is included in Cilk package of version 5.4.6. Both algorithms are executed on multicore servers, and experimental results show that the performance of the SPMD style of Cilk fast Fourier transform (FFT) parallel code is highly competitive and promising

Overlay virtualized wireless sensor networks for application in industrial internet of things : a review

Abstract: In recent times, Wireless Sensor Networks (WSNs) are broadly applied in the Industrial Internet of Things (IIoT) in order to enhance the productivity and efficiency of existing and prospective manufacturing industries. In particular, an area of interest that concerns the use of WSNs in IIoT is the concept of sensor network virtualization and overlay networks. Both network virtualization and overlay networks are considered contemporary because they provide the capacity to create services and applications at the edge of existing virtual networks without changing the underlying infrastructure. This capability makes both network virtualization and overlay network services highly beneficial, particularly for the dynamic needs of IIoT based applications such as in smart industry applications, smart city, and smart home applications. Consequently, the study of both WSN virtualization and overlay networks has become highly patronized in the literature, leading to the growth and maturity of the research area. In line with this growth, this paper provides a review of the development made thus far concerning virtualized sensor networks, with emphasis on the application of overlay networks in IIoT. Principally, the process of virtualization in WSN is discussed along with its importance in IIoT applications. Different challenges in WSN are also presented along with possible solutions given by the use of virtualized WSNs. Further details are also presented concerning the use of overlay networks as the next step to supporting virtualization in shared sensor networks. Our discussion closes with an exposition of the existing challenges in the use of virtualized WSN for IIoT applications. In general, because overlay networks will be contributory to the future development and advancement of smart industrial and smart city applications, this review may be considered by researchers as a reference point for those particularly interested in the study of this growing field

Breaking Computational Barriers to Perform Time Series Pattern Mining at Scale and at the Edge

Uncovering repeated behavior in time series is an important problem in many domains such as medicine, geophysics, meteorology, and many more. With the continuing surge of smart/embedded devices generating time series data, there is an ever growing need to perform analysis on datasets of increasing size. Additionally, there is an increasing need for analysis at low power edge devices due to latency problems inherent to the speed of light and the sheer amount of data being recorded. The matrix profile has proven to be a tool highly suitable for pattern mining in time series; however, a naive approach to computing the matrix profile makes it impossible to use effectively in both the cloud and at the edge. This dissertation shows how, through the use of GPUs and machine learning, the matrix profile is computed more feasibly, both at cloud-scale and at sensor-scale. In addition, it illustrates why both of these types of computation are important and what new insights they can provide to practitioners working with time series data

Internet Predictions

More than a dozen leading experts give their opinions on where the Internet is headed and where it will be in the next decade in terms of technology, policy, and applications. They cover topics ranging from the Internet of Things to climate change to the digital storage of the future. A summary of the articles is available in the Web extras section

Etude de l'adéquation des machines Exascale pour les algorithmes implémentant la méthode du Reverse Time Migation

As we are expecting Exascale systems for the 2018-2020 time frame, performance analysis and characterization of applications for new processor architectures and large scale systems are important tasks that permit to anticipate the required changes to efficiently exploit the future HPC systems. This thesis focuses on seismic imaging applications used for modeling complex physical phenomena, in particular the depth imaging application called Reverse Time Migration (RTM). My first contribution consists in characterizing and modeling the performance of the computational core of RTM which is based on finite-difference time-domain (FDTD) computations. I identify and explore the major tuning parameters influencing performance and the interaction between the architecture and the application. The second contribution is an analysis to identify the challenges for a hybrid and heterogeneous implementation of FDTD for manycore architectures. We target Intel’s first Xeon Phi co-processor, the Knights Corner. This architecture is an interesting proxy for our study since it contains some of the expected features of an Exascale system: concurrency and heterogeneity.My third contribution is an extension of the performance analysis and modeling to the full RTM. This adds communications and IOs to the computation part. RTM is a data intensive application and requires the storage of intermediate values of the computational field resulting in expensive IO accesses. My fourth contribution is the final measurement and model validation of my hybrid RTM implementation on a large system. This has been done on Stampede, a machine of the Texas Advanced Computing Center (TACC), which allows us to test the scalability up to 64 nodes each containing one 61-core Xeon Phi and two 8-core CPUs for a total close to 5000 heterogeneous coresLa caractérisation des applications en vue de les préparer pour les nouvelles architectures et les porter sur des systèmes très étendus est une étape importante pour pouvoir anticiper les modifications nécessaires. Comme les machines Exascale sont prévues pour la période 2018-2020, l'étude des applications et leur préparation pour ces machines s'avèrent donc essentielles. Nous nous intéressons aux applications d'imagerie sismique et en particulier à l'application Reverse Time Migration (RTM) car elle est très utilisée par les pétroliers dans le cadre de l'exploration sismique.La première partie de nos travaux a porté sur l'étude du cœur de calcul de l'application RTM qui consiste en un calcul de différences finies dans le domaine temporel (FDTD). Nous avons caractérisé cette partie de l'application en soulevant les aspects architecturaux des machines actuelles ayant un fort impact sur la performance, notamment les caches, les bandes passantes et le prefetching. Cette étude a abouti à l'élaboration d'un modèle de performance permettant de prédire le trafic DRAM des FDTD. La deuxième partie de la thèse se focalise sur l'impact de l'hétérogénéité et le parallélisme sur la FDTD et sur RTM. Nous avons choisi l'architecture manycore d’Intel, Xeon Phi, et nous avons étudié une implémentation "native" et une implémentation hétérogène et hybride, la version "symmetric". Enfin, nous avons porté l'application RTM sur un cluster hétérogène, Stampede du Texas Advanced Computing Center (TACC), où nous avons effectué des tests de scalabilité allant jusqu'à 64 nœuds contenant des coprocesseurs Xeon Phi et des processeurs Sandy Bridge ce qui correspond à presque 5000 cœur

Curracurrong: a stream processing system for distributed environments

Advances in technology have given rise to applications that are deployed on wireless sensor networks (WSNs), the cloud, and the Internet of things. There are many emerging applications, some of which include sensor-based monitoring, web traffic processing, and network monitoring. These applications collect large amount of data as an unbounded sequence of events and process them to generate a new sequences of events. Such applications need an adequate programming model that can process large amount of data with minimal latency; for this purpose, stream programming, among other paradigms, is ideal. However, stream programming needs to be adapted to meet the challenges inherent in running it in distributed environments. These challenges include the need for modern domain specific language (DSL), the placement of computations in the network to minimise energy costs, and timeliness in real-time applications. To overcome these challenges we developed a stream programming model that achieves easy-to-use programming interface, energy-efficient actor placement, and timeliness. This thesis presents Curracurrong, a stream data processing system for distributed environments. In Curracurrong, a query is represented as a stream graph of stream operators and communication channels. Curracurrong provides an extensible stream operator library and adapts to a wide range of applications. It uses an energy-efficient placement algorithm that optimises communication and computation. We extend the placement problem to support dynamically changing networks, and develop a dynamic program with polynomially bounded runtime to solve the placement problem. In many stream-based applications, real-time data processing is essential. We propose an approach that measures time delays in stream query processing; this model measures the total computational time from input to output of a query, i.e., end-to-end delay

Curracurrong: a stream processing system for distributed environments

Advances in technology have given rise to applications that are deployed on wireless sensor networks (WSNs), the cloud, and the Internet of things. There are many emerging applications, some of which include sensor-based monitoring, web traffic processing, and network monitoring. These applications collect large amount of data as an unbounded sequence of events and process them to generate a new sequences of events. Such applications need an adequate programming model that can process large amount of data with minimal latency; for this purpose, stream programming, among other paradigms, is ideal. However, stream programming needs to be adapted to meet the challenges inherent in running it in distributed environments. These challenges include the need for modern domain specific language (DSL), the placement of computations in the network to minimise energy costs, and timeliness in real-time applications. To overcome these challenges we developed a stream programming model that achieves easy-to-use programming interface, energy-efficient actor placement, and timeliness. This thesis presents Curracurrong, a stream data processing system for distributed environments. In Curracurrong, a query is represented as a stream graph of stream operators and communication channels. Curracurrong provides an extensible stream operator library and adapts to a wide range of applications. It uses an energy-efficient placement algorithm that optimises communication and computation. We extend the placement problem to support dynamically changing networks, and develop a dynamic program with polynomially bounded runtime to solve the placement problem. In many stream-based applications, real-time data processing is essential. We propose an approach that measures time delays in stream query processing; this model measures the total computational time from input to output of a query, i.e., end-to-end delay