Estimation of expiratory time constants via fuzzy clustering

Objective. In mechanically ventilated patients the expiratorytime constant provides information about respiratory mechanics. In thepresent study a new method, fuzzy clustering, is proposed to determine expiratory time constants. Fuzzy clustering differs from other methods since it neither interferes with expiration nor presumes any functional relationship between the variables analysed. Furthermore, time constantbehaviour during expiration can be assessed, instead of an average timeconstant. The time constants obtained with fuzzy clustering are comparedto time constants conventionally calculated from the same expirations. Methods. 20 mechanically ventilated patients, including 10 patients with COPD, were studied. The data of flow, volume and pressure were sampled. From these data, four local linear models were detected by fuzzy clustering. The

Paradigm of tunable clustering using binarization of consensus partition matrices (Bi-CoPaM) for gene discovery

Copyright @ 2013 Abu-Jamous et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Clustering analysis has a growing role in the study of co-expressed genes for gene discovery. Conventional binary and fuzzy clustering do not embrace the biological reality that some genes may be irrelevant for a problem and not be assigned to a cluster, while other genes may participate in several biological functions and should simultaneously belong to multiple clusters. Also, these algorithms cannot generate tight clusters that focus on their cores or wide clusters that overlap and contain all possibly relevant genes. In this paper, a new clustering paradigm is proposed. In this paradigm, all three eventualities of a gene being exclusively assigned to a single cluster, being assigned to multiple clusters, and being not assigned to any cluster are possible. These possibilities are realised through the primary novelty of the introduction of tunable binarization techniques. Results from multiple clustering experiments are aggregated to generate one fuzzy consensus partition matrix (CoPaM), which is then binarized to obtain the final binary partitions. This is referred to as Binarization of Consensus Partition Matrices (Bi-CoPaM). The method has been tested with a set of synthetic datasets and a set of five real yeast cell-cycle datasets. The results demonstrate its validity in generating relevant tight, wide, and complementary clusters that can meet requirements of different gene discovery studies.National Institute for Health Researc

Motion Challenge of Thoracic Tumors at Radiotherapy by Introducing an Available Compensation Strategy

In this chapter a description is explained about radiotherapy as common available method in treatment of thoracic tumors located at thorax region of patient body and move mainly due to respiration. In radiotherapy of dynamic tumors, the correct and accurate information of tumor position during the therapeutic irradiation determine the degree of treatment success. In this chapter we investigate quantitatively the effect of tumor motion on treatment quality by considering to possible drawbacks and errors at external surrogate’s radiotherapy as clinical treatment modality. For this aim, tumor motion information of a group of real patients treated with Cybeknife Synchrony system (from Georgetown University Hospital) was taken into account. A fuzzy logic based correlation model was employed for tumor motion tracking. Final results represent graphically the amount of tumor motion estimated by our utilized correlation model on three dimensions with targeting error calculation. It’s worth mentioning that each strategy that can improve targeting accuracy of dynamic tumors may strongly enhance treatment quality by saving healthy tissues against additional high dose. In this chapter we just tried to introduce readers with thoracic tumor motion error as challenging issue in radiotherapy and motion compensation solutions, implemented clinically up to now

PREDICTION OF RESPIRATORY MOTION

Radiation therapy is a cancer treatment method that employs high-energy radiation beams to destroy cancer cells by damaging the ability of these cells to reproduce. Thoracic and abdominal tumors may change their positions during respiration by as much as three centimeters during radiation treatment. The prediction of respiratory motion has become an important research area because respiratory motion severely affects precise radiation dose delivery. This study describes recent radiotherapy technologies including tools for measuring target position during radiotherapy and tracking-based delivery systems. In the first part of our study we review three prediction approaches of respiratory motion, i.e., model-based methods, model-free heuristic learning algorithms, and hybrid methods. In the second part of our work we propose respiratory motion estimation with hybrid implementation of extended Kalman filter. The proposed method uses the recurrent neural network as the role of the predictor and the extended Kalman filter as the role of the corrector. In the third part of our work we further extend our research work to present customized prediction of respiratory motion with clustering from multiple patient interactions. For the customized prediction we construct the clustering based on breathing patterns of multiple patients using the feature selection metrics that are composed of a variety of breathing features. In the fourth part of our work we retrospectively categorize breathing data into several classes and propose a new approach to detect irregular breathing patterns using neural networks. We have evaluated the proposed new algorithm by comparing the prediction overshoot and the tracking estimation value. The experimental results of 448 patients’ breathing patterns validated the proposed irregular breathing classifier

EEG-Based User Reaction Time Estimation Using Riemannian Geometry Features

Riemannian geometry has been successfully used in many brain-computer interface (BCI) classification problems and demonstrated superior performance. In this paper, for the first time, it is applied to BCI regression problems, an important category of BCI applications. More specifically, we propose a new feature extraction approach for Electroencephalogram (EEG) based BCI regression problems: a spatial filter is first used to increase the signal quality of the EEG trials and also to reduce the dimensionality of the covariance matrices, and then Riemannian tangent space features are extracted. We validate the performance of the proposed approach in reaction time estimation from EEG signals measured in a large-scale sustained-attention psychomotor vigilance task, and show that compared with the traditional powerband features, the tangent space features can reduce the root mean square estimation error by 4.30-8.30%, and increase the estimation correlation coefficient by 6.59-11.13%.Comment: arXiv admin note: text overlap with arXiv:1702.0291