Systematic Literature Review: Current Products, Topic, and Implementation of Graph Database

Planning, developing, and updating software cannot be separated from the role of the database. From various types of databases, graph databases are considered to have various advantages over their predecessor, relational databases. Graph databases then become the latest trend in the software and data science industry, apart from the development of graph theory itself. The proliferation of research on GDB in the last decade raises questions about what topics are associated with GDB, what industries use GDB in its data processing, what the GDB models are, and what types of GDB have been used most frequently by users in the last few years. This article aims to answer these questions through a Literature Review, which is carried out by determining objectives, determining the limits of review coverage, determining inclusion and exclusion criteria for data retrieval, data extraction, and quality assessment. Based on a review of 60 studies, several research topics related to GDB are Semantic Web, Big Data, and Parallel computing. A total of 19 (30%) studies used Neo4j as their database. Apart from Social Networks, the industries that implement GDB the most are the Transportation sector, Scientific Article Networks, and general sectors such as Enterprise Data, Biological data, and History data. This Literature Review concludes that research on the topic of the Graph Database is still developing in the future. This is shown by the breadth of application and the variety of new derivatives of GDB products offered by researchers to address existing problems

A Knowledge Graph Based Integration Approach for Industry 4.0

The fourth industrial revolution, Industry 4.0 (I40) aims at creating smart factories employing among others Cyber-Physical Systems (CPS), Internet of Things (IoT) and Artificial Intelligence (AI). Realizing smart factories according to the I40 vision requires intelligent human-to-machine and machine-to-machine communication. To achieve this communication, CPS along with their data need to be described and interoperability conflicts arising from various representations need to be resolved. For establishing interoperability, industry communities have created standards and standardization frameworks. Standards describe main properties of entities, systems, and processes, as well as interactions among them. Standardization frameworks classify, align, and integrate industrial standards according to their purposes and features. Despite being published by official international organizations, different standards may contain divergent definitions for similar entities. Further, when utilizing the same standard for the design of a CPS, different views can generate interoperability conflicts. Albeit expressive, standardization frameworks may represent divergent categorizations of the same standard to some extent, interoperability conflicts need to be resolved to support effective and efficient communication in smart factories. To achieve interoperability, data need to be semantically integrated and existing conflicts conciliated. This problem has been extensively studied in the literature. Obtained results can be applied to general integration problems. However, current approaches fail to consider specific interoperability conflicts that occur between entities in I40 scenarios. In this thesis, we tackle the problem of semantic data integration in I40 scenarios. A knowledge graphbased approach allowing for the integration of entities in I40 while considering their semantics is presented. To achieve this integration, there are challenges to be addressed on different conceptual levels. Firstly, defining mappings between standards and standardization frameworks; secondly, representing knowledge of entities in I40 scenarios described by standards; thirdly, integrating perspectives of CPS design while solving semantic heterogeneity issues; and finally, determining real industry applications for the presented approach. We first devise a knowledge-driven approach allowing for the integration of standards and standardization frameworks into an Industry 4.0 knowledge graph (I40KG). The standards ontology is used for representing the main properties of standards and standardization frameworks, as well as relationships among them. The I40KG permits to integrate standards and standardization frameworks while solving specific semantic heterogeneity conflicts in the domain. Further, we semantically describe standards in knowledge graphs. To this end, standards of core importance for I40 scenarios are considered, i.e., the Reference Architectural Model for I40 (RAMI4.0), AutomationML, and the Supply Chain Operation Reference Model (SCOR). In addition, different perspectives of entities describing CPS are integrated into the knowledge graphs. To evaluate the proposed methods, we rely on empirical evaluations as well as on the development of concrete use cases. The attained results provide evidence that a knowledge graph approach enables the effective data integration of entities in I40 scenarios while solving semantic interoperability conflicts, thus empowering the communication in smart factories

Theory and Practice of Data Citation

Citations are the cornerstone of knowledge propagation and the primary means of assessing the quality of research, as well as directing investments in science. Science is increasingly becoming "data-intensive", where large volumes of data are collected and analyzed to discover complex patterns through simulations and experiments, and most scientific reference works have been replaced by online curated datasets. Yet, given a dataset, there is no quantitative, consistent and established way of knowing how it has been used over time, who contributed to its curation, what results have been yielded or what value it has. The development of a theory and practice of data citation is fundamental for considering data as first-class research objects with the same relevance and centrality of traditional scientific products. Many works in recent years have discussed data citation from different viewpoints: illustrating why data citation is needed, defining the principles and outlining recommendations for data citation systems, and providing computational methods for addressing specific issues of data citation. The current panorama is many-faceted and an overall view that brings together diverse aspects of this topic is still missing. Therefore, this paper aims to describe the lay of the land for data citation, both from the theoretical (the why and what) and the practical (the how) angle.Comment: 24 pages, 2 tables, pre-print accepted in Journal of the Association for Information Science and Technology (JASIST), 201

Applying the levels of conceptual interoperability model in support of integratability, interoperability, and composability for system-of-systems engineering

The Levels of Conceptual Interoperability Model (LCIM) was developed to cope with the different layers of interoperation of modeling & simulation applications. It introduced technical, syntactic, semantic, pragmatic, dynamic, and conceptual layers of interoperation and showed how they are related to the ideas of integratability, interoperability, and composability. The model was successfully applied in various domains of systems, cybernetics, and informatics

Systematic Literature Review: Current Products, Topic, and Implementation of Graph Database

Planning, developing, and updating software cannot be separated from the role of the database. From various types of databases, graph databases are considered to have various advantages over their predecessor, relational databases. Graph databases then become the latest trend in the software and data science industry, apart from the development of graph theory itself. The proliferation of research on GDB in the last decade raises questions about what topics are associated with GDB, what industries use GDB in its data processing, what the GDB models are, and what types of GDB have been used most frequently by users in the last few years. This article aims to answer these questions through a Literature Review, which is carried out by determining objectives, determining the limits of review coverage, determining inclusion and exclusion criteria for data retrieval, data extraction, and quality assessment. Based on a review of 60 studies, several research topics related to GDB are Semantic Web, Big Data, and Parallel computing. A total of 19 (30%) studies used Neo4j as their database. Apart from Social Networks, the industries that implement GDB the most are the Transportation sector, Scientific Article Networks, and general sectors such as Enterprise Data, Biological data, and History data. This Literature Review concludes that research on the topic of the Graph Database is still developing in the future. This is shown by the breadth of application and the variety of new derivatives of GDB products offered by researchers to address existing problems

Applying the Levels of Conceptual Interoperability Model in Support of Integratability, Interoperability, and Composability for System-of-Systems Engineering

The Levels of Conceptual Interoperability Model (LCIM) was developed to cope with the different layers of interoperation of modeling & simulation applications. It introduced technical, syntactic, semantic, pragmatic, dynamic, and conceptual layers of interoperation and showed how they are related to the ideas of integratability, interoperability, and composability. The model was successfully applied in various domains of systems, cybernetics, and informatics

A Learning Health System for Radiation Oncology

The proposed research aims to address the challenges faced by clinical data science researchers in radiation oncology accessing, integrating, and analyzing heterogeneous data from various sources. The research presents a scalable intelligent infrastructure, called the Health Information Gateway and Exchange (HINGE), which captures and structures data from multiple sources into a knowledge base with semantically interlinked entities. This infrastructure enables researchers to mine novel associations and gather relevant knowledge for personalized clinical outcomes. The dissertation discusses the design framework and implementation of HINGE, which abstracts structured data from treatment planning systems, treatment management systems, and electronic health records. It utilizes disease-specific smart templates for capturing clinical information in a discrete manner. HINGE performs data extraction, aggregation, and quality and outcome assessment functions automatically, connecting seamlessly with local IT/medical infrastructure. Furthermore, the research presents a knowledge graph-based approach to map radiotherapy data to an ontology-based data repository using FAIR (Findable, Accessible, Interoperable, Reusable) concepts. This approach ensures that the data is easily discoverable and accessible for clinical decision support systems. The dissertation explores the ETL (Extract, Transform, Load) process, data model frameworks, ontologies, and provides a real-world clinical use case for this data mapping. To improve the efficiency of retrieving information from large clinical datasets, a search engine based on ontology-based keyword searching and synonym-based term matching tool was developed. The hierarchical nature of ontologies is leveraged to retrieve patient records based on parent and children classes. Additionally, patient similarity analysis is conducted using vector embedding models (Word2Vec, Doc2Vec, GloVe, and FastText) to identify similar patients based on text corpus creation methods. Results from the analysis using these models are presented. The implementation of a learning health system for predicting radiation pneumonitis following stereotactic body radiotherapy is also discussed. 3D convolutional neural networks (CNNs) are utilized with radiographic and dosimetric datasets to predict the likelihood of radiation pneumonitis. DenseNet-121 and ResNet-50 models are employed for this study, along with integrated gradient techniques to identify salient regions within the input 3D image dataset. The predictive performance of the 3D CNN models is evaluated based on clinical outcomes. Overall, the proposed Learning Health System provides a comprehensive solution for capturing, integrating, and analyzing heterogeneous data in a knowledge base. It offers researchers the ability to extract valuable insights and associations from diverse sources, ultimately leading to improved clinical outcomes. This work can serve as a model for implementing LHS in other medical specialties, advancing personalized and data-driven medicine

CHORUS Deliverable 2.1: State of the Art on Multimedia Search Engines

Based on the information provided by European projects and national initiatives related to multimedia search as well as domains experts that participated in the CHORUS Think-thanks and workshops, this document reports on the state of the art related to multimedia content search from, a technical, and socio-economic perspective. The technical perspective includes an up to date view on content based indexing and retrieval technologies, multimedia search in the context of mobile devices and peer-to-peer networks, and an overview of current evaluation and benchmark inititiatives to measure the performance of multimedia search engines. From a socio-economic perspective we inventorize the impact and legal consequences of these technical advances and point out future directions of research