Adaptable processes

We propose the concept of adaptable processes as a way of overcoming the limitations that process calculi have for describing patterns of dynamic process evolution. Such patterns rely on direct ways of controlling the behavior and location of running processes, and so they are at the heart of the adaptation capabilities present in many modern concurrent systems. Adaptable processes have a location and are sensible to actions of dynamic update at runtime; this allows to express a wide range of evolvability patterns for concurrent processes. We introduce a core calculus of adaptable processes and propose two verification problems for them: bounded and eventual adaptation. While the former ensures that the number of consecutive erroneous states that can be traversed during a computation is bound by some given number k, the latter ensures that if the system enters into a state with errors then a state without errors will be eventually reached. We study the (un)decidability of these two problems in several variants of the calculus, which result from considering dynamic and static topologies of adaptable processes as well as different evolvability patterns. Rather than a specification language, our calculus intends to be a basis for investigating the fundamental properties of evolvable processes and for developing richer languages with evolvability capabilities

Multi-level Visualization of Concurrent and Distributed Computation in Erlang

This paper describes a prototype visualization system for concurrent and distributed applications programmed using Erlang, providing two levels of granularity of view. Both visualizations are animated to show the dynamics of aspects of the computation. At the low level, we show the concurrent behaviour of the Erlang schedulers on a single instance of the Erlang virtual machine, which we call an Erlang node. Typically there will be one scheduler per core on a multicore system. Each scheduler maintains a run queue of processes to execute, and we visualize the migration of Erlang concurrent processes from one run queue to another as work is redistributed to fully exploit the hardware. The schedulers are shown as a graph with a circular layout. Next to each scheduler we draw a variable length bar indicating the current size of the run queue for the scheduler. At the high level, we visualize the distributed aspects of the system, showing interactions between Erlang nodes as a dynamic graph drawn with a force model. Speci?cally we show message passing between nodes as edges and lay out nodes according to their current connections. In addition, we also show the grouping of nodes into “s_groups” using an Euler diagram drawn with circles

CCS Dynamic Bisimulation is Progressing

Weak Observational Congruence (woc) defined on CCS agents is not a bisimulation since it does not require two states reached by bisimilar computations of woc agents to be still woc, e.g.\ $\alpha.\tau.\beta.nil$ and $\alpha.\beta.nil$ are woc but $\tau.\beta.nil$ and $\beta.nil$ are not. This fact prevents us from characterizing CCS semantics (when $\tau$ is considered invisible) as a final algebra, since the semantic function would induce an equivalence over the agents that is both a congruence and a bisimulation. In the paper we introduce a new behavioural equivalence for CCS agents, which is the coarsest among those bisimulations which are also congruences. We call it Dynamic Observational Congruence because it expresses a natural notion of equivalence for concurrent systems required to simulate each other in the presence of dynamic, i.e.\ run time, (re)configurations. We provide an algebraic characterization of Dynamic Congruence in terms of a universal property of finality. Furthermore we introduce Progressing Bisimulation, which forces processes to simulate each other performing explicit steps. We provide an algebraic characterization of it in terms of finality, two characterizations via modal logic in the style of HML, and a complete axiomatization for finite agents. Finally, we prove that Dynamic Congruence and Progressing Bisimulation coincide for CCS agents. Thus the title of the paper

Master of Science

thesisConcurrent programs are extremely important for efficiently programming future HPC systems. Large scientific programs may employ multiple processes or threads to run on HPC systems for days. Reliability is an essential requirement of existing concurrent programs. Therefore, verification of concurrent programs becomes increasingly important. Today we have two significant challenges in developing concurrent program verification tools: The first is scalability. Since new types of concurrent programs keep being created, verification tools need to scale to handle all these new types of programs. The second is providing formal coverage guarantee. Dynamic verification tools always face a huge schedule space. Both these capabilities must exist for testing programs that follow multiple concurrency models. Most current dynamic verification tools can only explore either thread level or process level schedules. Consequently, they fail to verify hybrid programs. Exploring mixed process and thread level schedules is not an ideal solution because the state space will grow exponentially in both levels. It is hard to systematically traverse these mixed schedules. Therefore, our approach is to determinize all concurrent APIs except one API whose schedules will then be explored. To improve search efficiency, we proposed a random-walk based heuristic algorithm. We observed many concurrent programs and concluded some common structures of them. Based on the existence of these structures, we can make dynamic verification tools focusing on specific regions and bypassing regions of less interest. We propose a random sampling of executions in the regions of less interest

Dynamic Congruence vs. Progressing Bisimulation for CCS

Weak Observational Congruence (woc) defined on CCS agents is not a bisimulation since it does not require two states reached by bisimilar computations of woc agents to be still woc, e.g. \alpha.\tau.\beta.nil and \alpha.\beta.nil are woc but \tau.\beta.nil and \beta.nil are not. This fact prevent us from characterizing CCS semantics (when \tau is considered invisible) as a final algebra, since the semantic function would induce an equivalence over the agents that is both a congruence and a bisimulation. In the paper we introduce a new behavioural equivalence for CCS agents, which is the coarsest among those bisimulations which are also congruences. We call it Dynamic Observational Congruence because it expresses a natural notion of equivalence for concurrent systems required to simulate each other in the presence of dynamic, i.e. run time, (re)configurations. We provide an algebraic characterization of Dynamic Congruence in terms of a universal property of finality. Furthermore we introduce Progressing Bisimulation, which forces processes to simulate each other performing explicit steps. We provide an algebraic characterization of it in terms of finality, two logical characterizations via modal logic in the style of HML and a complete axiomatization for finite agents (consisting of the axioms for Strong Observational Congruence and of two of the three Milner's $\tau$-laws). Finally, we prove that Dynamic Congruence and Progressing Bisimulation coincide for CCS agents

Learning Petri net models of non-linear gene interactions

Understanding how an individual's genetic make-up influences their risk of disease is a problem of paramount importance. Although machine-learning techniques are able to uncover the relationships between genotype and disease, the problem of automatically building the best biochemical model or “explanation” of the relationship has received less attention. In this paper, I describe a method based on random hill climbing that automatically builds Petri net models of non-linear (or multi-factorial) disease-causing gene–gene interactions. Petri nets are a suitable formalism for this problem, because they are used to model concurrent, dynamic processes analogous to biochemical reaction networks. I show that this method is routinely able to identify perfect Petri net models for three disease-causing gene–gene interactions recently reported in the literature

Insensitivity of visual short-term memory to irrelevant visual information

Several authors have hypothesised that visuo-spatial working memory is functionally analogous to verbal working memory. Irrelevant background speech impairs verbal short-term memory. We investigated whether irrelevant visual information has an analogous effect on visual short-term memory, using a dynamic visual noise (DVN) technique known to disrupt visual imagery (Quinn & McConnell, 1996a). Experiment 1 replicated the effect of DVN on pegword imagery. Experiments 2 and 3 showed no effect of DVN on recall of static matrix patterns, despite a significant effect of a concurrent spatial tapping task. Experiment 4 showed no effect of DVN on encoding or maintenance of arrays of matrix patterns, despite testing memory by a recognition procedure to encourage visual rather than spatial processing. Serial position curves showed a one-item recency effect typical of visual short-term memory. Experiment 5 showed no effect of DVN on short-term recognition of Chinese characters, despite effects of visual similarity and a concurrent colour memory task that confirmed visual processing of the characters. We conclude that irrelevant visual noise does not impair visual short-term memory. Visual working memory may not be functionally analogous to verbal working memory, and different cognitive processes may underlie visual short-term memory and visual imagery