Dense Vision in Image-guided Surgery

Image-guided surgery needs an efficient and effective camera tracking system in order to perform augmented reality for overlaying preoperative models or label cancerous tissues on the 2D video images of the surgical scene. Tracking in endoscopic/laparoscopic scenes however is an extremely difficult task primarily due to tissue deformation, instrument invasion into the surgical scene and the presence of specular highlights. State of the art feature-based SLAM systems such as PTAM fail in tracking such scenes since the number of good features to track is very limited. When the scene is smoky and when there are instrument motions, it will cause feature-based tracking to fail immediately. The work of this thesis provides a systematic approach to this problem using dense vision. We initially attempted to register a 3D preoperative model with multiple 2D endoscopic/laparoscopic images using a dense method but this approach did not perform well. We subsequently proposed stereo reconstruction to directly obtain the 3D structure of the scene. By using the dense reconstructed model together with robust estimation, we demonstrate that dense stereo tracking can be incredibly robust even within extremely challenging endoscopic/laparoscopic scenes. Several validation experiments have been conducted in this thesis. The proposed stereo reconstruction algorithm has turned out to be the state of the art method for several publicly available ground truth datasets. Furthermore, the proposed robust dense stereo tracking algorithm has been proved highly accurate in synthetic environment (< 0.1 mm RMSE) and qualitatively extremely robust when being applied to real scenes in RALP prostatectomy surgery. This is an important step toward achieving accurate image-guided laparoscopic surgery.Open Acces

Sparse variational regularization for visual motion estimation

The computation of visual motion is a key component in numerous computer vision tasks such as object detection, visual object tracking and activity recognition. Despite exten- sive research effort, efficient handling of motion discontinuities, occlusions and illumina- tion changes still remains elusive in visual motion estimation. The work presented in this thesis utilizes variational methods to handle the aforementioned problems because these methods allow the integration of various mathematical concepts into a single en- ergy minimization framework. This thesis applies the concepts from signal sparsity to the variational regularization for visual motion estimation. The regularization is designed in such a way that it handles motion discontinuities and can detect object occlusions

Computational intelligence approaches to robotics, automation, and control [Volume guest editors]

No abstract available

Contents lists available at ScienceDirect Pattern Recognition

journal homepage: www.elsevier.com/locate/pr Edge-preserving smoothing using a similarity measure in adaptive geodesi

On the Importance of Accurate Geometry Data for Dense 3D Vision Tasks

Learning-based methods to solve dense 3D vision problems typically train on 3D sensor data. The respectively used principle of measuring distances provides advantages and drawbacks. These are typically not compared nor discussed in the literature due to a lack of multi-modal datasets. Texture-less regions are problematic for structure from motion and stereo, reflective material poses issues for active sensing, and distances for translucent objects are intricate to measure with existing hardware. Training on inaccurate or corrupt data induces model bias and hampers generalisation capabilities. These effects remain unnoticed if the sensor measurement is considered as ground truth during the evaluation. This paper investigates the effect of sensor errors for the dense 3D vision tasks of depth estimation and reconstruction. We rigorously show the significant impact of sensor characteristics on the learned predictions and notice generalisation issues arising from various technologies in everyday household environments. For evaluation, we introduce a carefully designed dataset\footnote{dataset available at https://github.com/Junggy/HAMMER-dataset} comprising measurements from commodity sensors, namely D-ToF, I-ToF, passive/active stereo, and monocular RGB+P. Our study quantifies the considerable sensor noise impact and paves the way to improved dense vision estimates and targeted data fusion.Comment: Accepted at CVPR 2023, Main Paper + Supp. Mat. arXiv admin note: substantial text overlap with arXiv:2205.0456

An evaluation of partial differential equations based digital inpainting algorithms

Partial Differential equations (PDEs) have been used to model various phenomena/tasks in different scientific and engineering endeavours. This thesis is devoted to modelling image inpainting by numerical implementations of certain PDEs. The main objectives of image inpainting include reconstructing damaged parts and filling-in regions in which data/colour information are missing. Different automatic and semi-automatic approaches to image inpainting have been developed including PDE-based, texture synthesis-based, exemplar-based, and hybrid approaches. Various challenges remain unresolved in reconstructing large size missing regions and/or missing areas with highly textured surroundings. Our main aim is to address such challenges by developing new advanced schemes with particular focus on using PDEs of different orders to preserve continuity of textural and geometric information in the surrounding of missing regions. We first investigated the problem of partial colour restoration in an image region whose greyscale channel is intact. A PDE-based solution is known that is modelled as minimising total variation of gradients in the different colour channels. We extend the applicability of this model to partial inpainting in other 3-channels colour spaces (such as RGB where information is missing in any of the two colours), simply by exploiting the known linear/affine relationships between different colouring models in the derivation of a modified PDE solution obtained by using the Euler-Lagrange minimisation of the corresponding gradient Total Variation (TV). We also developed two TV models on the relations between greyscale and colour channels using the Laplacian operator and the directional derivatives of gradients. The corresponding Euler-Lagrange minimisation yields two new PDEs of different orders for partial colourisation. We implemented these solutions in both spatial and frequency domains. We measure the success of these models by evaluating known image quality measures in inpainted regions for sufficiently large datasets and scenarios. The results reveal that our schemes compare well with existing algorithms, but inpainting large regions remains a challenge. Secondly, we investigate the Total Inpainting (TI) problem where all colour channels are missing in an image region. Reviewing and implementing existing PDE-based total inpainting methods reveal that high order PDEs, applied to each colour channel separately, perform well but are influenced by the size of the region and the quantity of texture surrounding it. Here we developed a TI scheme that benefits from our partial inpainting approach and apply two PDE methods to recover the missing regions in the image. First, we extract the (Y, Cb, Cr) of the image outside the missing region, apply the above PDE methods for reconstructing the missing regions in the luminance channel (Y), and then use the colourisation method to recover the missing (Cb, Cr) colours in the region. We shall demonstrate that compared to existing TI algorithms, our proposed method (using 2 PDE methods) performs well when tested on large datasets of natural and face images. Furthermore, this helps understanding of the impact of the texture in the surrounding areas on inpainting and opens new research directions. Thirdly, we investigate existing Exemplar-Based Inpainting (EBI) methods that do not use PDEs but simultaneously propagate the texture and structure into the missing region by finding similar patches within the rest of image and copying them into the boundary of the missing region. The order of patch propagation is determined by a priority function, and the similarity is determined by matching criteria. We shall exploit recently emerging Topological Data Analysis (TDA) tools to create innovative EBI schemes, referred to as TEBI. TDA studies shapes of data/objects to quantify image texture in terms of connectivity and closeness properties of certain data landmarks. Such quantifications help determine the appropriate size of patch propagation and will be used to modify the patch propagation priority function using the geometrical properties of curvature of isophotes, and to improve the matching criteria of patches by calculating the correlation coefficients from the spatial, gradient and Laplacian domains. The performance of this TEBI method will be tested by applying it to natural dataset images, resulting in improved inpainting when compared with other EBI methods. Fourthly, the recent hybrid-based inpainting techniques are reviewed and a number of highly performing innovative hybrid techniques that combine the use of high order PDE methods with the TEBI method for the simultaneous rebuilding of the missing texture and structure regions in an image are proposed. Such a hybrid scheme first decomposes the image into texture and structure components, and then the missing regions in these components are recovered by TEBI and PDE based methods respectively. The performance of our hybrid schemes will be compared with two existing hybrid algorithms. Fifthly, we turn our attention to inpainting large missing regions, and develop an innovative inpainting scheme that uses the concept of seam carving to reduce this problem to that of inpainting a smaller size missing region that can be dealt with efficiently using the inpainting schemes developed above. Seam carving resizes images based on content-awareness of the image for both reduction and expansion without affecting those image regions that have rich information. The missing region of the seam-carved version will be recovered by the TEBI method, original image size is restored by adding the removed seams and the missing parts of the added seams are then repaired using a high order PDE inpainting scheme. The benefits of this approach in dealing with large missing regions are demonstrated. The extensive performance testing of the developed inpainting methods shows that these methods significantly outperform existing inpainting methods for such a challenging task. However, the performance is still not acceptable in recovering large missing regions in high texture and structure images, and hence we shall identify remaining challenges to be investigated in the future. We shall also extend our work by investigating recently developed deep learning based image/video colourisation, with the aim of overcoming its limitations and shortcoming. Finally, we should also describe our on-going research into using TDA to detect recently growing serious “malicious” use of inpainting to create Fake images/videos

Change blindness: eradication of gestalt strategies

Arrays of eight, texture-defined rectangles were used as stimuli in a one-shot change blindness (CB) task where there was a 50% chance that one rectangle would change orientation between two successive presentations separated by an interval. CB was eliminated by cueing the target rectangle in the first stimulus, reduced by cueing in the interval and unaffected by cueing in the second presentation. This supports the idea that a representation was formed that persisted through the interval before being 'overwritten' by the second presentation (Landman et al, 2003 Vision Research 43149–164]. Another possibility is that participants used some kind of grouping or Gestalt strategy. To test this we changed the spatial position of the rectangles in the second presentation by shifting them along imaginary spokes (by ±1 degree) emanating from the central fixation point. There was no significant difference seen in performance between this and the standard task [F(1,4)=2.565, p=0.185]. This may suggest two things: (i) Gestalt grouping is not used as a strategy in these tasks, and (ii) it gives further weight to the argument that objects may be stored and retrieved from a pre-attentional store during this task

Feature Based Segmentation of Colour Textured Images using Markov Random Field Model

The problem of image segmentation has been investigated with a focus on colored textured image segmentation.Texture is a substantial feature for the analysis of different types of images. Texture segmentation has an assortment of important applications ranging from vision guided autonomous robotics and remote sensing to medical diagnosis and retrieval in large image databases. But the main problem with the textured images is that they contain texture elements of various sizes and in some cases each of which can itself be textured.Thus the texture image segmentation is widely discerned as a difficult and thought-provoking problem.In this thesis an attempt has been made to devise methodologies for automated color textured image segmentation scheme. This problem has been addressed in the literature, still many key open issues remain to be investigated. As an initial step in this direction, this thesis proposes two methods which address the problem of color texture image segmentation through feature extraction approach in partially supervised approach.The feature extraction approaches can be classified into feature based and model based techniques.In feature based technique features are assessed without any model in mind. But in case of model based approach an inherent mathematical model lets eatures to be measured by fitting the model to the texture.The inherent features of the texture are captured in a set of parameters in order to understand the properties generating the texture. Nevertheless, a clear distinction can not be made between the two approaches and hence a combination of approaches from different categories is frequently adopted. In textured image segmentation, image model assumes a significant role and is developed by capturing salient spatial properties of an image. Markov random field (MRF)theory provides a convenient and consistent way to model context dependent entities.In this context a new scheme is proposed using Gaussian MRF model where the segmentation problem is formulated as a pixel labeling problem.The a priori class labels are modeled as Markov random field model and the number of classes is known a priori in partially supervised framework.The image label estimation problem is cast in Bayesian framework using Maximum a Posteriori (MAP)criterion and the MAP estimates of the image labels are obtained using iterated conditional modes (ICM) algorithm. Though the MRF model takes into account the local spatial interactions, it has a limitation in modeling natural scenes of distinct regions. Hence in our formulation, the first scheme takes into account within and between color plane interactions to incorporate spectraland contextual features. Genetic algorithm is employed for the initialization of ICM algorithm to obtain MAP estimates of image labels. The faster convergence property of the ICM algorithm and global convergence property of genetic algorithm are hybridized to obtain segmentation with better accuracy as well as faster convergence

3D object reconstruction using computer vision : reconstruction and characterization applications for external human anatomical structures

Tese de doutoramento. Engenharia Informática. Faculdade de Engenharia. Universidade do Porto. 201

Online Structured Learning for Real-Time Computer Vision Gaming Applications

In recent years computer vision has played an increasingly important role in the development of computer games, and it now features as one of the core technologies for many gaming platforms. The work in this thesis addresses three problems in real-time computer vision, all of which are motivated by their potential application to computer games. We rst present an approach for real-time 2D tracking of arbitrary objects. In common with recent research in this area we incorporate online learning to provide an appearance model which is able to adapt to the target object and its surrounding background during tracking. However, our approach moves beyond the standard framework of tracking using binary classication and instead integrates tracking and learning in a more principled way through the use of structured learning. As well as providing a more powerful framework for adaptive visual object tracking, our approach also outperforms state-of-the-art tracking algorithms on standard datasets. Next we consider the task of keypoint-based object tracking. We take the traditional pipeline of matching keypoints followed by geometric verication and show how this can be embedded into a structured learning framework in order to provide principled adaptivity to a given environment. We also propose an approximation method allowing us to take advantage of recently developed binary image descriptors, meaning our approach is suitable for real-time application even on low-powered portable devices. Experimentally, we clearly see the benet that online adaptation using structured learning can bring to this problem. Finally, we present an approach for approximately recovering the dense 3D structure of a scene which has been mapped by a simultaneous localisation and mapping system. Our approach is guided by the constraints of the low-powered portable hardware we are targeting, and we develop a system which coarsely models the scene using a small number of planes. To achieve this, we frame the task as a structured prediction problem and introduce online learning into our approach to provide adaptivity to a given scene. This allows us to use relatively simple multi-view information coupled with online learning of appearance to efficiently produce coarse reconstructions of a scene